Wall clock time and date at job start Tue Mar 31 2020 03:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.59116 * 2 1 4 4 C 1.53163 * 109.59128 * 239.56034 * 2 1 3 5 5 C 1.53031 * 109.33070 * 185.57384 * 4 2 1 6 6 C 1.53040 * 109.53069 * 61.37248 * 5 4 2 7 7 H 1.08997 * 109.49912 * 178.65900 * 6 5 4 8 8 N 1.46502 * 109.49547 * 58.59139 * 6 5 4 9 9 C 1.34774 * 119.99834 * 155.00311 * 8 6 5 10 10 O 1.21561 * 120.00308 * 0.02562 * 9 8 6 11 11 C 1.47872 * 120.00201 * 180.02562 * 9 8 6 12 12 N 1.34549 * 126.04477 * 0.02562 * 11 9 8 13 13 C 1.30872 * 107.26888 * 180.02562 * 12 11 9 14 14 N 1.34583 * 107.62368 * 359.97438 * 13 12 11 15 15 C 1.46507 * 125.74542 * 179.97438 * 14 13 12 16 16 N 1.28846 * 108.50405 * 359.73543 * 14 13 12 17 17 C 1.53192 * 109.30883 * 298.64444 * 6 5 4 18 18 N 1.46923 * 108.78045 * 54.63446 * 17 6 5 19 19 C 1.36934 * 120.63461 * 126.40698 * 18 17 6 20 20 H 1.08006 * 119.99958 * 209.51295 * 19 18 17 21 21 C 1.38807 * 119.99820 * 29.52131 * 19 18 17 22 22 N 1.31616 * 120.00413 * 15.60931 * 21 19 18 23 23 Si 1.86807 * 119.99951 * 195.61266 * 21 19 18 24 24 H 1.48499 * 109.47121 * 94.71863 * 23 21 19 25 25 H 1.48497 * 109.46941 * 214.71938 * 23 21 19 26 26 H 1.48501 * 109.47134 * 334.71705 * 23 21 19 27 27 H 1.09003 * 109.47197 * 299.72243 * 1 2 3 28 28 H 1.08996 * 109.47342 * 59.71824 * 1 2 3 29 29 H 1.08994 * 109.47751 * 179.72106 * 1 2 3 30 30 H 1.09003 * 109.47947 * 65.62010 * 4 2 1 31 31 H 1.09007 * 109.50044 * 305.53749 * 4 2 1 32 32 H 1.09002 * 109.45948 * 301.35850 * 5 4 2 33 33 H 1.09007 * 109.46392 * 181.38486 * 5 4 2 34 34 H 0.96998 * 120.00049 * 335.00774 * 8 6 5 35 35 H 1.08006 * 126.18582 * 179.97438 * 13 12 11 36 36 H 1.08996 * 109.46653 * 90.00488 * 15 14 13 37 37 H 1.09000 * 109.46990 * 210.00056 * 15 14 13 38 38 H 1.08997 * 109.47334 * 330.00398 * 15 14 13 39 39 H 1.09006 * 109.58270 * 174.41820 * 17 6 5 40 40 H 1.08991 * 109.58817 * 294.84049 * 17 6 5 41 41 H 0.97001 * 120.00448 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7310 -1.2441 5 6 3.5674 -0.8496 -1.1690 6 6 3.9568 -1.6657 0.0657 7 1 5.0411 -1.7701 0.1057 8 7 3.3404 -2.9925 -0.0108 9 6 3.8968 -4.0327 0.6409 10 8 4.9100 -3.8700 1.2926 11 6 3.2750 -5.3721 0.5632 12 7 2.1594 -5.6887 -0.1192 13 6 1.9411 -6.9659 0.0643 14 7 2.9205 -7.4368 0.8582 15 6 3.0600 -8.8216 1.3156 16 7 3.7176 -6.4657 1.1440 17 6 3.4650 -0.9453 1.3250 18 7 2.0225 -0.6980 1.1955 19 6 1.1537 -1.1099 2.1704 20 1 0.1381 -1.3724 1.9130 21 6 1.5781 -1.1898 3.4896 22 7 2.6907 -0.5924 3.8604 23 14 0.5702 -2.1456 4.7388 24 1 1.1011 -3.5281 4.8496 25 1 0.6557 -1.4751 6.0610 26 1 -0.8473 -2.1934 4.2988 27 1 -0.3634 0.5095 0.8925 28 1 -0.3634 0.5182 -0.8874 29 1 -0.3634 -1.0275 -0.0050 30 1 1.7658 -0.1696 -2.1361 31 1 1.6028 -1.7271 -1.2887 32 1 4.0061 0.1458 -1.0995 33 1 3.9375 -1.3478 -2.0651 34 1 2.5317 -3.1224 -0.5306 35 1 1.1228 -7.5385 -0.3469 36 1 3.6623 -9.3815 0.6002 37 1 3.5478 -8.8349 2.2903 38 1 2.0738 -9.2787 1.3966 39 1 3.6517 -1.5690 2.1992 40 1 3.9902 0.0037 1.4317 41 1 2.9871 -0.6479 4.7823 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071487918.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:36 Heat of formation + Delta-G solvation = 57.302664 kcal Electronic energy + Delta-G solvation = -24705.089413 eV Core-core repulsion = 21235.859211 eV Total energy + Delta-G solvation = -3469.230201 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.40712 -40.92204 -39.10830 -35.86874 -35.47898 -34.49403 -32.76526 -32.25409 -31.72824 -28.79616 -27.77866 -26.76455 -25.08005 -23.88018 -23.23385 -22.10992 -21.73310 -20.35734 -19.28791 -18.22122 -17.74498 -17.49494 -17.08483 -16.79221 -16.00974 -15.90337 -15.60534 -15.40921 -15.01233 -14.72747 -14.46683 -14.02556 -13.98396 -13.92627 -13.63421 -13.02552 -12.87157 -12.84007 -12.65352 -12.55260 -12.39887 -12.11535 -12.05761 -11.55562 -11.54083 -11.42192 -11.35931 -11.17072 -11.03620 -10.57314 -10.53292 -9.98436 -8.56218 -7.81952 -5.26331 0.34646 1.17287 1.35466 1.36583 1.39014 1.46303 2.15641 2.38675 2.48960 3.17834 3.33479 3.53513 3.64994 3.90372 4.03865 4.12197 4.21484 4.34863 4.40627 4.49982 4.65455 4.66667 4.75731 4.83820 4.85549 4.98001 5.05668 5.09018 5.13770 5.28864 5.34100 5.35813 5.58937 5.61577 5.65517 5.69867 5.74002 5.75893 6.45097 6.50276 7.02031 7.19129 7.22456 7.94080 8.44494 9.23314 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.012910 B = 0.006531 C = 0.005311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.360085 B = 4286.129784 C = 5270.333078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.154 3.846 3 H 0.019 0.981 4 C -0.121 4.121 5 C -0.109 4.109 6 C 0.125 3.875 7 H 0.071 0.929 8 N -0.666 5.666 9 C 0.602 3.398 10 O -0.575 6.575 11 C 0.122 3.878 12 N -0.507 5.507 13 C 0.204 3.796 14 N -0.303 5.303 15 C 0.075 3.925 16 N -0.291 5.291 17 C 0.171 3.829 18 N -0.595 5.595 19 C -0.231 4.231 20 H 0.074 0.926 21 C -0.057 4.057 22 N -0.936 5.936 23 Si 0.948 3.052 24 H -0.306 1.306 25 H -0.296 1.296 26 H -0.258 1.258 27 H 0.035 0.965 28 H 0.077 0.923 29 H 0.048 0.952 30 H 0.094 0.906 31 H 0.058 0.942 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.412 0.588 35 H 0.285 0.715 36 H 0.112 0.888 37 H 0.090 0.910 38 H 0.144 0.856 39 H 0.043 0.957 40 H 0.005 0.995 41 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.146 -14.778 -13.903 20.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.049 3.951 3 H 0.037 0.963 4 C -0.159 4.159 5 C -0.146 4.146 6 C 0.019 3.981 7 H 0.089 0.911 8 N -0.317 5.317 9 C 0.385 3.615 10 O -0.452 6.452 11 C -0.157 4.157 12 N -0.234 5.234 13 C -0.090 4.090 14 N -0.098 5.098 15 C -0.064 4.064 16 N -0.132 5.132 17 C 0.044 3.956 18 N -0.318 5.318 19 C -0.362 4.362 20 H 0.092 0.908 21 C -0.251 4.251 22 N -0.583 5.583 23 Si 0.778 3.222 24 H -0.235 1.235 25 H -0.223 1.223 26 H -0.182 1.182 27 H 0.054 0.946 28 H 0.096 0.904 29 H 0.067 0.933 30 H 0.112 0.888 31 H 0.077 0.923 32 H 0.099 0.901 33 H 0.104 0.896 34 H 0.250 0.750 35 H 0.300 0.700 36 H 0.130 0.870 37 H 0.109 0.891 38 H 0.163 0.837 39 H 0.062 0.938 40 H 0.023 0.977 41 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -3.021 -14.409 -13.101 19.707 hybrid contribution -0.450 -0.557 1.414 1.584 sum -3.471 -14.966 -11.687 19.303 Atomic orbital electron populations 1.21720 0.94731 1.01216 1.00878 1.20781 0.94195 0.93329 0.86767 0.96307 1.21966 0.94713 1.00940 0.98327 1.21671 0.97385 1.00018 0.95575 1.21688 0.96561 0.81538 0.98340 0.91133 1.45468 1.29371 1.07277 1.49584 1.16706 0.83050 0.82440 0.79343 1.90750 1.26755 1.84859 1.42854 1.23482 0.95570 0.94758 1.01918 1.71190 1.14571 1.14081 1.23514 1.27558 0.96606 0.90530 0.94312 1.47825 1.17223 1.10704 1.34076 1.22762 1.08081 0.72579 1.02936 1.74237 1.19789 0.97095 1.22107 1.20849 0.84408 0.95472 0.94844 1.44250 1.02151 1.65591 1.19856 1.19404 0.95197 1.35271 0.86341 0.90797 1.25720 0.99068 1.01382 0.98972 1.70149 1.25831 1.46172 1.16171 0.85515 0.79580 0.77725 0.79393 1.23496 1.22277 1.18177 0.94585 0.90419 0.93299 0.88774 0.92335 0.90078 0.89589 0.74982 0.69951 0.86965 0.89103 0.83743 0.93806 0.97678 0.94895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.50 7.95 71.98 0.57 -3.92 16 2 C 0.15 6.03 3.50 44.96 0.16 6.19 16 3 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 4 C -0.12 -3.62 5.20 30.66 0.16 -3.46 16 5 C -0.11 -3.33 5.59 30.62 0.17 -3.16 16 6 C 0.12 5.10 2.81 45.07 0.13 5.23 16 7 H 0.07 2.99 7.58 -2.39 -0.02 2.97 16 8 N -0.67 -27.19 4.91 -445.00 -2.19 -29.37 16 9 C 0.60 27.63 7.80 86.79 0.68 28.30 16 10 O -0.57 -30.77 16.75 -3.91 -0.07 -30.84 16 11 C 0.12 4.83 7.96 137.13 1.09 5.93 16 12 N -0.51 -16.09 11.09 -193.02 -2.14 -18.23 16 13 C 0.20 4.12 12.62 180.30 2.27 6.40 16 14 N -0.30 -6.85 3.72 -373.44 -1.39 -8.24 16 15 C 0.07 0.66 11.38 127.77 1.45 2.12 16 16 N -0.29 -10.52 12.08 -52.44 -0.63 -11.16 16 17 C 0.17 8.87 4.89 86.36 0.42 9.29 16 18 N -0.59 -29.67 2.90 -675.29 -1.96 -31.63 16 19 C -0.23 -12.85 8.58 84.03 0.72 -12.12 16 20 H 0.07 3.95 6.23 -2.91 -0.02 3.94 16 21 C -0.06 -3.37 4.94 84.86 0.42 -2.95 16 22 N -0.94 -59.76 11.22 21.65 0.24 -59.52 16 23 Si 0.95 48.54 29.58 68.60 2.03 50.57 16 24 H -0.31 -16.30 7.11 99.48 0.71 -15.60 16 25 H -0.30 -15.20 7.11 99.48 0.71 -14.49 16 26 H -0.26 -12.12 7.11 99.48 0.71 -11.41 16 27 H 0.03 1.42 7.62 -2.39 -0.02 1.40 16 28 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.05 1.74 7.44 -2.39 -0.02 1.72 16 30 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.06 1.79 6.40 -2.38 -0.02 1.77 16 32 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.09 2.15 8.14 -2.38 -0.02 2.14 16 34 H 0.41 15.34 6.48 -92.71 -0.60 14.74 16 35 H 0.29 1.61 8.06 -2.91 -0.02 1.59 16 36 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.14 0.03 8.14 -2.39 -0.02 0.01 16 39 H 0.04 2.73 6.13 -2.38 -0.01 2.72 16 40 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 41 H 0.24 15.29 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -88.07 334.30 2.59 -85.48 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: 0.45 Total: 15.11 kcal Atomic # 6 Polarization: 29.58 SS G_CDS: 8.24 Total: 37.83 kcal Atomic # 7 Polarization: -150.08 SS G_CDS: -8.07 Total: -158.15 kcal Atomic # 8 Polarization: -30.77 SS G_CDS: -0.07 Total: -30.84 kcal Atomic # 14 Polarization: 48.54 SS G_CDS: 2.03 Total: 50.57 kcal Total: -88.07 2.59 -85.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071487918.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.784 kcal (2) G-P(sol) polarization free energy of solvation -88.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds