Wall clock time and date at job start Tue Mar 31 2020 03:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.58458 * 2 1 4 4 C 1.53189 * 109.58969 * 239.56940 * 2 1 3 5 5 C 1.53041 * 109.31241 * 185.57827 * 4 2 1 6 6 C 1.53035 * 109.53888 * 61.36629 * 5 4 2 7 7 H 1.09004 * 109.50223 * 178.68093 * 6 5 4 8 8 N 1.46504 * 109.52419 * 58.60102 * 6 5 4 9 9 C 1.34777 * 120.00223 * 155.14644 * 8 6 5 10 10 O 1.21280 * 119.99575 * 359.97438 * 9 8 6 11 11 C 1.50698 * 119.99908 * 180.02562 * 9 8 6 12 12 N 1.46498 * 109.46923 * 179.97438 * 11 9 8 13 13 N 1.28601 * 124.62044 * 269.69847 * 12 11 9 14 14 C 1.31384 * 108.71887 * 179.83334 * 13 12 11 15 15 C 1.39684 * 105.89973 * 0.40902 * 14 13 12 16 16 N 1.28605 * 124.62006 * 90.00028 * 12 11 9 17 17 C 1.53192 * 109.31453 * 298.63688 * 6 5 4 18 18 N 1.46919 * 108.77539 * 54.63215 * 17 6 5 19 19 C 1.36940 * 120.62958 * 126.41785 * 18 17 6 20 20 H 1.08002 * 120.00016 * 221.17661 * 19 18 17 21 21 C 1.38807 * 120.00091 * 41.17773 * 19 18 17 22 22 N 1.31613 * 119.99871 * 214.88957 * 21 19 18 23 23 Si 1.86803 * 120.00078 * 34.88957 * 21 19 18 24 24 H 1.48508 * 109.46998 * 84.62791 * 23 21 19 25 25 H 1.48492 * 109.47195 * 204.62409 * 23 21 19 26 26 H 1.48499 * 109.47226 * 324.62831 * 23 21 19 27 27 H 1.08997 * 109.47446 * 299.71968 * 1 2 3 28 28 H 1.09002 * 109.46996 * 59.71763 * 1 2 3 29 29 H 1.08999 * 109.47379 * 179.71744 * 1 2 3 30 30 H 1.08996 * 109.50134 * 305.53180 * 4 2 1 31 31 H 1.09003 * 109.49525 * 65.62969 * 4 2 1 32 32 H 1.09002 * 109.45996 * 301.34437 * 5 4 2 33 33 H 1.09001 * 109.46106 * 181.38798 * 5 4 2 34 34 H 0.97006 * 119.99721 * 335.14420 * 8 6 5 35 35 H 1.08999 * 109.47106 * 299.99478 * 11 9 8 36 36 H 1.08999 * 109.47334 * 60.00040 * 11 9 8 37 37 H 1.07997 * 127.04854 * 180.16728 * 14 13 12 38 38 H 1.07997 * 127.04733 * 179.72942 * 15 14 13 39 39 H 1.09003 * 109.58454 * 294.84303 * 17 6 5 40 40 H 1.09000 * 109.58776 * 174.42148 * 17 6 5 41 41 H 0.97009 * 120.00099 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0436 -0.7310 -1.2444 5 6 3.5675 -0.8494 -1.1689 6 6 3.9569 -1.6656 0.0658 7 1 5.0412 -1.7694 0.1062 8 7 3.3411 -2.9927 -0.0104 9 6 3.8964 -4.0319 0.6440 10 8 4.9062 -3.8683 1.2956 11 6 3.2633 -5.3971 0.5651 12 7 4.0506 -6.3469 1.3552 13 7 5.0263 -7.0474 0.8956 14 6 5.5094 -7.7867 1.8683 15 6 4.7353 -7.4927 2.9932 16 7 3.8568 -6.5978 2.6016 17 6 3.4649 -0.9452 1.3251 18 7 2.0225 -0.6980 1.1954 19 6 1.1536 -1.1099 2.1704 20 1 0.2055 -1.5497 1.8982 21 6 1.4915 -0.9623 3.5087 22 7 1.1106 -1.8654 4.3870 23 14 2.4867 0.5182 4.0629 24 1 1.5748 1.6649 4.3056 25 1 3.2100 0.1871 5.3168 26 1 3.4663 0.8796 3.0070 27 1 -0.3634 0.5094 0.8924 28 1 -0.3633 0.5182 -0.8875 29 1 -0.3634 -1.0276 -0.0051 30 1 1.6030 -1.7269 -1.2891 31 1 1.7661 -0.1695 -2.1366 32 1 4.0061 0.1460 -1.0994 33 1 3.9379 -1.3474 -2.0650 34 1 2.5336 -3.1235 -0.5319 35 1 2.2481 -5.3501 0.9591 36 1 3.2350 -5.7251 -0.4740 37 1 6.3333 -8.4824 1.8091 38 1 4.8378 -7.9147 3.9820 39 1 3.9902 0.0039 1.4319 40 1 3.6517 -1.5689 2.1993 41 1 1.3463 -1.7621 5.3223 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071537280.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:02 Heat of formation + Delta-G solvation = 105.155000 kcal Electronic energy + Delta-G solvation = -24651.875935 eV Core-core repulsion = 21184.720767 eV Total energy + Delta-G solvation = -3467.155168 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.31738 -39.71173 -37.81879 -34.31373 -33.54539 -32.73077 -32.18648 -30.96935 -30.72815 -28.12241 -26.29240 -24.86052 -22.67673 -22.57264 -22.22031 -20.68266 -20.36585 -18.99196 -17.69943 -17.31229 -16.43642 -15.72088 -15.47667 -15.35625 -14.98186 -14.42798 -14.42459 -14.05979 -13.81495 -13.51559 -13.37058 -13.00688 -12.68778 -12.25623 -12.13695 -11.76196 -11.43699 -11.43012 -11.24907 -10.97922 -10.64099 -10.55378 -10.50559 -10.29498 -10.09708 -9.99256 -9.94136 -9.81266 -9.50164 -9.04301 -8.68438 -8.29333 -6.69912 -6.07353 -3.38073 1.96437 2.37403 2.70056 2.85913 3.42018 3.52739 3.53256 3.57610 4.35434 4.59324 4.84054 4.88648 4.94293 5.08034 5.15872 5.27117 5.27444 5.28939 5.41627 5.49619 5.78408 5.93376 5.99047 6.13064 6.18960 6.23571 6.26654 6.30943 6.35563 6.41954 6.47830 6.53452 6.79698 6.88844 6.95724 6.99386 7.06638 7.79799 8.03633 8.40951 8.49334 8.54842 8.99510 9.73129 10.21081 11.07554 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.015728 B = 0.005747 C = 0.004792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.850388 B = 4871.035715 C = 5841.392032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.161 3.839 3 H 0.026 0.974 4 C -0.130 4.130 5 C -0.118 4.118 6 C 0.128 3.872 7 H 0.078 0.922 8 N -0.693 5.693 9 C 0.507 3.493 10 O -0.531 6.531 11 C 0.122 3.878 12 N -0.138 5.138 13 N -0.288 5.288 14 C -0.031 4.031 15 C -0.032 4.032 16 N -0.267 5.267 17 C 0.133 3.867 18 N -0.590 5.590 19 C -0.278 4.278 20 H 0.076 0.924 21 C 0.054 3.946 22 N -0.873 5.873 23 Si 0.841 3.159 24 H -0.289 1.289 25 H -0.298 1.298 26 H -0.262 1.262 27 H 0.063 0.937 28 H 0.037 0.963 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.056 0.944 34 H 0.399 0.601 35 H 0.140 0.860 36 H 0.131 0.869 37 H 0.195 0.805 38 H 0.195 0.805 39 H 0.032 0.968 40 H 0.072 0.928 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.879 -6.336 -11.467 13.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.055 3.945 3 H 0.044 0.956 4 C -0.169 4.169 5 C -0.157 4.157 6 C 0.022 3.978 7 H 0.096 0.904 8 N -0.345 5.345 9 C 0.290 3.710 10 O -0.407 6.407 11 C -0.002 4.002 12 N -0.038 5.038 13 N -0.129 5.129 14 C -0.214 4.214 15 C -0.215 4.215 16 N -0.107 5.107 17 C 0.006 3.994 18 N -0.314 5.314 19 C -0.406 4.406 20 H 0.093 0.907 21 C -0.149 4.149 22 N -0.511 5.511 23 Si 0.668 3.332 24 H -0.216 1.216 25 H -0.225 1.225 26 H -0.187 1.187 27 H 0.082 0.918 28 H 0.056 0.944 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.075 0.925 34 H 0.235 0.765 35 H 0.158 0.842 36 H 0.149 0.851 37 H 0.212 0.788 38 H 0.212 0.788 39 H 0.049 0.951 40 H 0.091 0.909 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.812 -5.375 -11.562 13.308 hybrid contribution 0.716 0.278 0.949 1.221 sum 4.528 -5.097 -10.614 12.615 Atomic orbital electron populations 1.21748 0.95400 1.01631 1.00231 1.20600 0.93561 0.93388 0.86923 0.95640 1.22043 0.94811 1.00966 0.99094 1.21691 0.97284 1.00095 0.96584 1.21574 0.97011 0.81597 0.97613 0.90366 1.45656 1.29641 1.08229 1.50991 1.20185 0.84976 0.85791 0.80056 1.90749 1.25036 1.84623 1.40278 1.21714 0.95627 0.85874 0.96999 1.47326 1.22449 1.28993 1.05036 1.73970 1.02976 1.07236 1.28672 1.24702 1.03661 1.03140 0.89894 1.24784 0.95777 0.99176 1.01749 1.74213 1.24360 1.15495 0.96662 1.21697 0.85465 0.96678 0.95526 1.44305 1.01937 1.65225 1.19963 1.18462 1.02172 1.35733 0.84189 0.90704 1.25579 0.96574 0.96727 0.96059 1.70068 1.46681 1.31103 1.03289 0.87398 0.80702 0.86905 0.78176 1.21592 1.22472 1.18735 0.91841 0.94437 0.92666 0.92316 0.92503 0.90973 0.92479 0.76518 0.84180 0.85139 0.78834 0.78770 0.95050 0.90918 0.92714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.26 8.07 37.16 0.30 -1.96 16 2 C 0.16 2.87 3.50 -67.60 -0.24 2.64 16 3 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 4 C -0.13 -1.81 5.21 -26.61 -0.14 -1.95 16 5 C -0.12 -1.62 5.59 -26.69 -0.15 -1.77 16 6 C 0.13 2.18 2.81 -67.81 -0.19 1.99 16 7 H 0.08 1.38 7.58 -51.93 -0.39 0.99 16 8 N -0.69 -11.01 4.92 -53.69 -0.26 -11.28 16 9 C 0.51 9.01 7.86 -10.99 -0.09 8.92 16 10 O -0.53 -11.87 16.09 5.56 0.09 -11.78 16 11 C 0.12 1.75 7.02 -5.20 -0.04 1.71 16 12 N -0.14 -2.34 3.44 -11.66 -0.04 -2.38 16 13 N -0.29 -4.62 12.05 30.68 0.37 -4.25 16 14 C -0.03 -0.41 12.20 -17.21 -0.21 -0.62 16 15 C -0.03 -0.45 12.20 -17.21 -0.21 -0.66 16 16 N -0.27 -4.84 12.05 30.68 0.37 -4.47 16 17 C 0.13 2.85 4.19 -3.71 -0.02 2.84 16 18 N -0.59 -12.85 2.39 -164.78 -0.39 -13.24 16 19 C -0.28 -7.20 8.42 -15.06 -0.13 -7.32 16 20 H 0.08 2.06 6.83 -52.49 -0.36 1.70 16 21 C 0.05 1.52 4.82 -17.43 -0.08 1.44 16 22 N -0.87 -26.16 13.97 55.49 0.78 -25.39 16 23 Si 0.84 21.71 27.40 -169.99 -4.66 17.05 16 24 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 25 H -0.30 -7.96 7.11 56.52 0.40 -7.56 16 26 H -0.26 -6.52 5.24 56.52 0.30 -6.22 16 27 H 0.06 1.22 7.68 -51.93 -0.40 0.82 16 28 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.96 7.42 -51.93 -0.39 0.58 16 30 H 0.06 0.79 6.40 -51.93 -0.33 0.46 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.40 5.35 6.78 -40.82 -0.28 5.07 16 35 H 0.14 1.86 8.14 -51.93 -0.42 1.44 16 36 H 0.13 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.19 1.70 8.06 -52.49 -0.42 1.28 16 38 H 0.20 2.01 8.06 -52.49 -0.42 1.58 16 39 H 0.03 0.69 6.71 -51.93 -0.35 0.34 16 40 H 0.07 1.86 7.02 -51.93 -0.36 1.49 16 41 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 331.47 15.07 5.00 5.00 Total: -1.00 -35.39 331.47 -5.84 -41.23 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -5.90 Total: 4.26 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: -1.18 Total: 5.26 kcal Atomic # 7 Polarization: -61.82 SS G_CDS: 0.82 Total: -61.01 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: 0.09 Total: -11.78 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.66 Total: 17.05 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -35.39 -5.84 -41.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071537280.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.385 kcal (2) G-P(sol) polarization free energy of solvation -35.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds