Wall clock time and date at job start Tue Mar 31 2020 03:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.58458 * 2 1 4 4 C 1.53189 * 109.58969 * 239.56940 * 2 1 3 5 5 C 1.53041 * 109.31241 * 185.57827 * 4 2 1 6 6 C 1.53035 * 109.53888 * 61.36629 * 5 4 2 7 7 H 1.09004 * 109.50223 * 178.68093 * 6 5 4 8 8 N 1.46504 * 109.52419 * 58.60102 * 6 5 4 9 9 C 1.34777 * 120.00223 * 155.14644 * 8 6 5 10 10 O 1.21280 * 119.99575 * 359.97438 * 9 8 6 11 11 C 1.50698 * 119.99908 * 180.02562 * 9 8 6 12 12 N 1.46498 * 109.46923 * 179.97438 * 11 9 8 13 13 N 1.28601 * 124.62044 * 269.69847 * 12 11 9 14 14 C 1.31384 * 108.71887 * 179.83334 * 13 12 11 15 15 C 1.39684 * 105.89973 * 0.40902 * 14 13 12 16 16 N 1.28605 * 124.62006 * 90.00028 * 12 11 9 17 17 C 1.53192 * 109.31453 * 298.63688 * 6 5 4 18 18 N 1.46919 * 108.77539 * 54.63215 * 17 6 5 19 19 C 1.36940 * 120.62958 * 126.41785 * 18 17 6 20 20 H 1.08002 * 120.00016 * 221.17661 * 19 18 17 21 21 C 1.38807 * 120.00091 * 41.17773 * 19 18 17 22 22 N 1.31613 * 119.99871 * 214.88957 * 21 19 18 23 23 Si 1.86803 * 120.00078 * 34.88957 * 21 19 18 24 24 H 1.48508 * 109.46998 * 84.62791 * 23 21 19 25 25 H 1.48492 * 109.47195 * 204.62409 * 23 21 19 26 26 H 1.48499 * 109.47226 * 324.62831 * 23 21 19 27 27 H 1.08997 * 109.47446 * 299.71968 * 1 2 3 28 28 H 1.09002 * 109.46996 * 59.71763 * 1 2 3 29 29 H 1.08999 * 109.47379 * 179.71744 * 1 2 3 30 30 H 1.08996 * 109.50134 * 305.53180 * 4 2 1 31 31 H 1.09003 * 109.49525 * 65.62969 * 4 2 1 32 32 H 1.09002 * 109.45996 * 301.34437 * 5 4 2 33 33 H 1.09001 * 109.46106 * 181.38798 * 5 4 2 34 34 H 0.97006 * 119.99721 * 335.14420 * 8 6 5 35 35 H 1.08999 * 109.47106 * 299.99478 * 11 9 8 36 36 H 1.08999 * 109.47334 * 60.00040 * 11 9 8 37 37 H 1.07997 * 127.04854 * 180.16728 * 14 13 12 38 38 H 1.07997 * 127.04733 * 179.72942 * 15 14 13 39 39 H 1.09003 * 109.58454 * 294.84303 * 17 6 5 40 40 H 1.09000 * 109.58776 * 174.42148 * 17 6 5 41 41 H 0.97009 * 120.00099 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0436 -0.7310 -1.2444 5 6 3.5675 -0.8494 -1.1689 6 6 3.9569 -1.6656 0.0658 7 1 5.0412 -1.7694 0.1062 8 7 3.3411 -2.9927 -0.0104 9 6 3.8964 -4.0319 0.6440 10 8 4.9062 -3.8683 1.2956 11 6 3.2633 -5.3971 0.5651 12 7 4.0506 -6.3469 1.3552 13 7 5.0263 -7.0474 0.8956 14 6 5.5094 -7.7867 1.8683 15 6 4.7353 -7.4927 2.9932 16 7 3.8568 -6.5978 2.6016 17 6 3.4649 -0.9452 1.3251 18 7 2.0225 -0.6980 1.1954 19 6 1.1536 -1.1099 2.1704 20 1 0.2055 -1.5497 1.8982 21 6 1.4915 -0.9623 3.5087 22 7 1.1106 -1.8654 4.3870 23 14 2.4867 0.5182 4.0629 24 1 1.5748 1.6649 4.3056 25 1 3.2100 0.1871 5.3168 26 1 3.4663 0.8796 3.0070 27 1 -0.3634 0.5094 0.8924 28 1 -0.3633 0.5182 -0.8875 29 1 -0.3634 -1.0276 -0.0051 30 1 1.6030 -1.7269 -1.2891 31 1 1.7661 -0.1695 -2.1366 32 1 4.0061 0.1460 -1.0994 33 1 3.9379 -1.3474 -2.0650 34 1 2.5336 -3.1235 -0.5319 35 1 2.2481 -5.3501 0.9591 36 1 3.2350 -5.7251 -0.4740 37 1 6.3333 -8.4824 1.8091 38 1 4.8378 -7.9147 3.9820 39 1 3.9902 0.0039 1.4319 40 1 3.6517 -1.5689 2.1993 41 1 1.3463 -1.7621 5.3223 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071537280.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:01 Heat of formation + Delta-G solvation = 77.964321 kcal Electronic energy + Delta-G solvation = -24653.055012 eV Core-core repulsion = 21184.720767 eV Total energy + Delta-G solvation = -3468.334245 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.45094 -41.12975 -39.31351 -35.88398 -34.73970 -34.48517 -33.35880 -32.51980 -32.34565 -29.29090 -27.84914 -26.53743 -24.18135 -23.77847 -23.47556 -22.07597 -21.72860 -20.55376 -18.97627 -18.61812 -18.16667 -17.21417 -16.81561 -16.73319 -16.51665 -15.91566 -15.71378 -15.40212 -15.22235 -15.00356 -14.82520 -14.42684 -14.38296 -13.86999 -13.47657 -13.36083 -12.97858 -12.74167 -12.58184 -12.53453 -12.49221 -12.16794 -11.82716 -11.74550 -11.60345 -11.41281 -11.31221 -11.29936 -11.12917 -10.52379 -10.22124 -10.04692 -8.56215 -8.25545 -5.47948 0.79028 1.29033 1.30492 1.37610 1.42599 1.50085 1.64981 2.28208 2.46252 2.95100 3.33949 3.43457 3.60317 3.94598 3.97223 4.03600 4.06716 4.15363 4.19827 4.37009 4.58604 4.60787 4.63722 4.73491 4.84301 4.99457 5.02062 5.10110 5.11547 5.14555 5.24611 5.31207 5.37540 5.54569 5.58574 5.66842 5.70174 5.94653 6.29797 6.50787 7.04602 7.18440 7.41215 7.70128 8.20425 8.93616 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.015728 B = 0.005747 C = 0.004792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.850388 B = 4871.035715 C = 5841.392032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.151 3.849 3 H 0.029 0.971 4 C -0.120 4.120 5 C -0.109 4.109 6 C 0.134 3.866 7 H 0.071 0.929 8 N -0.682 5.682 9 C 0.501 3.499 10 O -0.584 6.584 11 C 0.123 3.877 12 N -0.154 5.154 13 N -0.307 5.307 14 C -0.022 4.022 15 C -0.032 4.032 16 N -0.321 5.321 17 C 0.135 3.865 18 N -0.598 5.598 19 C -0.240 4.240 20 H 0.057 0.943 21 C -0.002 4.002 22 N -0.923 5.923 23 Si 0.884 3.116 24 H -0.289 1.289 25 H -0.316 1.316 26 H -0.249 1.249 27 H 0.032 0.968 28 H 0.077 0.923 29 H 0.046 0.954 30 H 0.066 0.934 31 H 0.094 0.906 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.414 0.586 35 H 0.145 0.855 36 H 0.176 0.824 37 H 0.238 0.762 38 H 0.227 0.773 39 H 0.027 0.973 40 H 0.021 0.979 41 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.372 -6.435 -14.930 16.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.047 3.953 3 H 0.047 0.953 4 C -0.159 4.159 5 C -0.147 4.147 6 C 0.027 3.973 7 H 0.089 0.911 8 N -0.334 5.334 9 C 0.285 3.715 10 O -0.464 6.464 11 C -0.001 4.001 12 N -0.054 5.054 13 N -0.148 5.148 14 C -0.205 4.205 15 C -0.215 4.215 16 N -0.162 5.162 17 C 0.009 3.991 18 N -0.323 5.323 19 C -0.369 4.369 20 H 0.075 0.925 21 C -0.200 4.200 22 N -0.565 5.565 23 Si 0.713 3.287 24 H -0.216 1.216 25 H -0.244 1.244 26 H -0.174 1.174 27 H 0.051 0.949 28 H 0.095 0.905 29 H 0.065 0.935 30 H 0.084 0.916 31 H 0.112 0.888 32 H 0.098 0.902 33 H 0.110 0.890 34 H 0.252 0.748 35 H 0.163 0.837 36 H 0.193 0.807 37 H 0.254 0.746 38 H 0.244 0.756 39 H 0.045 0.955 40 H 0.040 0.960 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.278 -5.429 -15.110 16.616 hybrid contribution 0.582 0.279 1.972 2.075 sum 4.860 -5.151 -13.138 14.925 Atomic orbital electron populations 1.21698 0.94828 1.01275 1.00695 1.20925 0.94163 0.93676 0.86582 0.95323 1.21958 0.94652 1.01337 0.97949 1.21681 0.97236 1.00096 0.95645 1.21413 0.96615 0.82096 0.97129 0.91068 1.45596 1.29872 1.07536 1.50416 1.20860 0.84338 0.87321 0.78953 1.90715 1.27533 1.85641 1.42495 1.21909 0.94996 0.83801 0.99365 1.47503 1.23236 1.29808 1.04861 1.73931 1.03231 1.07859 1.29737 1.25475 1.03784 1.02558 0.88727 1.25466 0.94708 0.97888 1.03404 1.74166 1.26607 1.17529 0.97866 1.21541 0.85388 0.96077 0.96121 1.44428 1.01521 1.65988 1.20356 1.18434 1.01336 1.32522 0.84631 0.92546 1.26054 0.98549 0.98629 0.96809 1.70162 1.50175 1.32972 1.03197 0.86683 0.79778 0.84854 0.77418 1.21613 1.24372 1.17367 0.94894 0.90453 0.93457 0.91572 0.88753 0.90182 0.89014 0.74798 0.83727 0.80701 0.74575 0.75630 0.95503 0.95984 0.93505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.02 8.07 71.98 0.58 -3.44 16 2 C 0.15 4.94 3.50 44.97 0.16 5.10 16 3 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 4 C -0.12 -2.75 5.21 30.67 0.16 -2.60 16 5 C -0.11 -2.49 5.59 30.62 0.17 -2.32 16 6 C 0.13 4.34 2.81 45.07 0.13 4.47 16 7 H 0.07 2.46 7.58 -2.38 -0.02 2.44 16 8 N -0.68 -20.68 4.92 -442.16 -2.17 -22.85 16 9 C 0.50 17.72 7.86 87.66 0.69 18.41 16 10 O -0.58 -26.81 16.09 -3.03 -0.05 -26.86 16 11 C 0.12 3.43 7.02 85.63 0.60 4.03 16 12 N -0.15 -5.19 3.44 -190.81 -0.66 -5.85 16 13 N -0.31 -9.51 12.05 -56.86 -0.69 -10.19 16 14 C -0.02 -0.56 12.20 85.11 1.04 0.48 16 15 C -0.03 -0.88 12.20 85.11 1.04 0.16 16 16 N -0.32 -11.77 12.05 -56.86 -0.69 -12.45 16 17 C 0.14 5.81 4.19 86.36 0.36 6.17 16 18 N -0.60 -25.64 2.39 -675.24 -1.61 -27.25 16 19 C -0.24 -12.62 8.42 84.03 0.71 -11.91 16 20 H 0.06 3.18 6.83 -2.91 -0.02 3.16 16 21 C 0.00 -0.10 4.82 84.86 0.41 0.31 16 22 N -0.92 -57.99 13.97 21.65 0.30 -57.69 16 23 Si 0.88 46.36 27.40 68.60 1.88 48.24 16 24 H -0.29 -14.94 7.11 99.48 0.71 -14.24 16 25 H -0.32 -17.36 7.11 99.48 0.71 -16.66 16 26 H -0.25 -12.32 5.24 99.48 0.52 -11.80 16 27 H 0.03 1.22 7.68 -2.39 -0.02 1.20 16 28 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.05 1.55 7.42 -2.39 -0.02 1.53 16 30 H 0.07 1.45 6.40 -2.39 -0.02 1.44 16 31 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.41 9.97 6.78 -92.70 -0.63 9.34 16 35 H 0.15 3.83 8.14 -2.39 -0.02 3.81 16 36 H 0.18 3.10 8.14 -2.39 -0.02 3.08 16 37 H 0.24 3.36 8.06 -2.91 -0.02 3.34 16 38 H 0.23 4.31 8.06 -2.91 -0.02 4.28 16 39 H 0.03 1.17 6.71 -2.39 -0.02 1.16 16 40 H 0.02 1.15 7.02 -2.39 -0.02 1.14 16 41 H 0.26 15.74 8.31 -92.70 -0.77 14.97 16 Total: -1.00 -82.77 331.47 2.59 -80.17 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: 0.23 Total: 15.87 kcal Atomic # 6 Polarization: 12.82 SS G_CDS: 6.04 Total: 18.86 kcal Atomic # 7 Polarization: -130.77 SS G_CDS: -5.51 Total: -136.28 kcal Atomic # 8 Polarization: -26.81 SS G_CDS: -0.05 Total: -26.86 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 1.88 Total: 48.24 kcal Total: -82.77 2.59 -80.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071537280.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.137 kcal (2) G-P(sol) polarization free energy of solvation -82.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds