Wall clock time and date at job start Tue Mar 31 2020 03:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09005 * 109.58262 * 2 1 4 4 C 1.53185 * 109.58687 * 120.43130 * 2 1 3 5 5 C 1.53044 * 109.31283 * 174.42284 * 4 2 1 6 6 C 1.53036 * 109.53975 * 298.63754 * 5 4 2 7 7 H 1.09002 * 109.50017 * 181.31393 * 6 5 4 8 8 N 1.46501 * 109.49604 * 301.37892 * 6 5 4 9 9 C 1.34780 * 120.00258 * 205.00034 * 8 6 5 10 10 O 1.21277 * 119.99631 * 359.97438 * 9 8 6 11 11 C 1.50693 * 120.00118 * 180.02562 * 9 8 6 12 12 N 1.46496 * 109.47260 * 179.97438 * 11 9 8 13 13 N 1.28602 * 124.62045 * 269.70220 * 12 11 9 14 14 C 1.31384 * 108.71747 * 179.82702 * 13 12 11 15 15 C 1.39674 * 105.90067 * 0.40890 * 14 13 12 16 16 N 1.28605 * 124.62070 * 89.99211 * 12 11 9 17 17 C 1.53189 * 109.31373 * 61.36092 * 6 5 4 18 18 N 1.46925 * 109.58506 * 239.72444 * 2 1 3 19 19 C 1.36931 * 120.63268 * 6.32259 * 18 2 1 20 20 H 1.07998 * 120.00495 * 330.19464 * 19 18 2 21 21 C 1.38815 * 119.99881 * 150.18667 * 19 18 2 22 22 N 1.31621 * 119.99984 * 344.60992 * 21 19 18 23 23 Si 1.86800 * 120.00122 * 164.60671 * 21 19 18 24 24 H 1.48504 * 109.47115 * 90.00059 * 23 21 19 25 25 H 1.48500 * 109.47480 * 210.00260 * 23 21 19 26 26 H 1.48499 * 109.47007 * 330.00291 * 23 21 19 27 27 H 1.08999 * 109.46644 * 180.27679 * 1 2 3 28 28 H 1.08991 * 109.47100 * 300.27864 * 1 2 3 29 29 H 1.09000 * 109.46822 * 60.28158 * 1 2 3 30 30 H 1.09006 * 109.49627 * 294.37245 * 4 2 1 31 31 H 1.09003 * 109.49911 * 54.47462 * 4 2 1 32 32 H 1.09005 * 109.45498 * 58.65562 * 5 4 2 33 33 H 1.09001 * 109.46049 * 178.62199 * 5 4 2 34 34 H 0.97003 * 120.00157 * 24.99983 * 8 6 5 35 35 H 1.09005 * 109.46787 * 299.99821 * 11 9 8 36 36 H 1.08997 * 109.47689 * 59.99802 * 11 9 8 37 37 H 1.08001 * 127.04643 * 180.15628 * 14 13 12 38 38 H 1.08000 * 127.04765 * 179.76423 * 15 14 13 39 39 H 1.09001 * 109.58978 * 185.58076 * 17 6 5 40 40 H 1.09001 * 109.58955 * 65.15532 * 17 6 5 41 41 H 0.97002 * 120.00123 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7310 1.2444 5 6 3.5676 -0.8495 1.1690 6 6 3.9570 -1.6655 -0.0657 7 1 5.0414 -1.7693 -0.1061 8 7 3.3413 -2.9926 0.0111 9 6 3.8982 -4.0327 -0.6406 10 8 4.9087 -3.8697 -1.2911 11 6 3.2645 -5.3976 -0.5620 12 7 4.0530 -6.3482 -1.3498 13 7 3.8580 -6.6040 -2.5950 14 6 4.7406 -7.4954 -2.9856 15 6 5.5125 -7.7888 -1.8590 16 7 5.0312 -7.0446 -0.8892 17 6 3.4651 -0.9451 -1.3250 18 7 2.0226 -0.6979 -1.1954 19 6 1.1531 -1.1151 -2.1676 20 1 0.1407 -1.3858 -1.9066 21 6 1.5730 -1.1900 -3.4886 22 7 2.6818 -0.5871 -3.8619 23 14 0.5645 -2.1467 -4.7364 24 1 -0.4324 -1.2429 -5.3646 25 1 1.4634 -2.6960 -5.7830 26 1 -0.1395 -3.2618 -4.0535 27 1 -0.3632 -1.0277 0.0050 28 1 -0.3633 0.5181 0.8874 29 1 -0.3633 0.5095 -0.8925 30 1 1.7661 -0.1696 2.1366 31 1 1.6031 -1.7270 1.2890 32 1 4.0061 0.1460 1.0995 33 1 3.9379 -1.3476 2.0650 34 1 2.5329 -3.1229 0.5311 35 1 3.2334 -5.7244 0.4775 36 1 2.2503 -5.3509 -0.9586 37 1 4.8450 -7.9180 -3.9740 38 1 6.3362 -8.4846 -1.7979 39 1 3.6519 -1.5687 -2.1993 40 1 3.9903 0.0041 -1.4317 41 1 2.9750 -0.6391 -4.7851 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071537282.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:07 Heat of formation + Delta-G solvation = 102.373871 kcal Electronic energy + Delta-G solvation = -24710.367607 eV Core-core repulsion = 21243.091840 eV Total energy + Delta-G solvation = -3467.275767 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.35494 -39.59772 -37.67049 -34.22672 -33.56078 -32.76874 -32.22763 -30.90019 -29.93335 -28.10639 -26.13625 -24.96456 -22.71600 -22.34839 -22.16406 -20.66184 -20.34008 -18.82289 -17.67453 -17.31336 -16.30330 -15.66886 -15.45258 -15.36269 -14.83300 -14.44642 -14.14848 -14.00764 -13.84652 -13.41804 -13.19144 -12.95493 -12.56187 -12.31316 -11.85649 -11.47322 -11.28238 -11.19207 -10.99167 -10.92186 -10.69927 -10.60707 -10.41952 -10.35827 -10.13752 -9.99022 -9.90719 -9.56052 -9.49787 -9.04413 -8.49997 -8.45869 -6.61130 -5.76269 -3.21251 1.93214 2.34516 2.66242 2.90562 3.38891 3.46211 3.48975 3.59671 4.32073 4.50053 4.89195 4.91985 5.02828 5.22951 5.27343 5.32336 5.38806 5.46309 5.46813 5.56080 5.95939 6.06048 6.10549 6.15061 6.28397 6.31461 6.31840 6.39681 6.46036 6.55648 6.61686 6.75769 6.83324 7.01877 7.07804 7.31994 7.64144 7.82037 7.90513 8.47712 8.50661 8.56762 9.22068 9.86720 10.42998 11.31841 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.013922 B = 0.006303 C = 0.004876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.765545 B = 4441.265930 C = 5740.560169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.130 4.130 5 C -0.118 4.118 6 C 0.120 3.880 7 H 0.075 0.925 8 N -0.693 5.693 9 C 0.503 3.497 10 O -0.527 6.527 11 C 0.120 3.880 12 N -0.137 5.137 13 N -0.273 5.273 14 C -0.031 4.031 15 C -0.030 4.030 16 N -0.285 5.285 17 C 0.162 3.838 18 N -0.582 5.582 19 C -0.255 4.255 20 H 0.068 0.932 21 C 0.009 3.991 22 N -0.897 5.897 23 Si 0.896 3.104 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.280 1.280 27 H 0.051 0.949 28 H 0.036 0.964 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.052 0.948 34 H 0.397 0.603 35 H 0.131 0.869 36 H 0.137 0.863 37 H 0.195 0.805 38 H 0.195 0.805 39 H 0.095 0.905 40 H 0.026 0.974 41 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.795 -8.884 10.093 13.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.058 3.942 3 H 0.042 0.958 4 C -0.170 4.170 5 C -0.156 4.156 6 C 0.015 3.985 7 H 0.093 0.907 8 N -0.344 5.344 9 C 0.285 3.715 10 O -0.403 6.403 11 C -0.004 4.004 12 N -0.037 5.037 13 N -0.113 5.113 14 C -0.214 4.214 15 C -0.213 4.213 16 N -0.126 5.126 17 C 0.035 3.965 18 N -0.306 5.306 19 C -0.384 4.384 20 H 0.085 0.915 21 C -0.191 4.191 22 N -0.541 5.541 23 Si 0.726 3.274 24 H -0.215 1.215 25 H -0.216 1.216 26 H -0.205 1.205 27 H 0.070 0.930 28 H 0.055 0.945 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.071 0.929 34 H 0.232 0.768 35 H 0.149 0.851 36 H 0.155 0.845 37 H 0.212 0.788 38 H 0.212 0.788 39 H 0.113 0.887 40 H 0.044 0.956 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.835 -7.823 10.195 12.878 hybrid contribution -0.276 -1.081 -1.139 1.595 sum 0.559 -8.904 9.056 12.712 Atomic orbital electron populations 1.21791 0.96085 1.01178 1.00219 1.20469 0.92919 0.93664 0.87159 0.95778 1.22071 0.95042 1.00668 0.99177 1.21692 0.97100 1.00194 0.96639 1.21822 0.96922 0.81287 0.98496 0.90650 1.45705 1.29346 1.08471 1.50898 1.20152 0.85242 0.85675 0.80448 1.90765 1.24887 1.84501 1.40163 1.21746 0.95379 0.86178 0.97097 1.47323 1.22272 1.29064 1.05077 1.74153 1.24604 1.15724 0.96864 1.24764 0.95728 0.99184 1.01705 1.24703 1.03728 1.03029 0.89876 1.73979 1.02860 1.07097 1.28670 1.21162 0.83923 0.97040 0.94334 1.44024 1.02554 1.64833 1.19143 1.19030 0.95125 1.38280 0.86004 0.91481 1.25082 0.97691 0.99267 0.97053 1.69980 1.24022 1.43371 1.16683 0.86416 0.79403 0.79962 0.81660 1.21518 1.21560 1.20518 0.92980 0.94451 0.92019 0.92793 0.92673 0.91006 0.92948 0.76807 0.85098 0.84516 0.78777 0.78781 0.88716 0.95601 0.93634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 7.95 37.16 0.30 -2.05 16 2 C 0.16 3.11 3.50 -67.60 -0.24 2.88 16 3 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 4 C -0.13 -1.94 5.21 -26.61 -0.14 -2.08 16 5 C -0.12 -1.77 5.58 -26.69 -0.15 -1.92 16 6 C 0.12 2.21 2.81 -67.81 -0.19 2.02 16 7 H 0.08 1.46 7.58 -51.93 -0.39 1.07 16 8 N -0.69 -11.48 4.92 -53.69 -0.26 -11.74 16 9 C 0.50 9.13 7.87 -10.99 -0.09 9.04 16 10 O -0.53 -12.15 16.09 5.56 0.09 -12.06 16 11 C 0.12 1.72 7.02 -5.20 -0.04 1.68 16 12 N -0.14 -2.31 3.44 -11.67 -0.04 -2.35 16 13 N -0.27 -4.86 12.05 30.68 0.37 -4.50 16 14 C -0.03 -0.44 12.20 -17.21 -0.21 -0.65 16 15 C -0.03 -0.40 12.20 -17.21 -0.21 -0.61 16 16 N -0.29 -4.58 12.05 30.67 0.37 -4.21 16 17 C 0.16 3.79 4.89 -3.71 -0.02 3.78 16 18 N -0.58 -13.42 2.90 -164.77 -0.48 -13.90 16 19 C -0.25 -6.57 8.56 -15.06 -0.13 -6.70 16 20 H 0.07 1.68 6.24 -52.49 -0.33 1.35 16 21 C 0.01 0.24 4.94 -17.43 -0.09 0.15 16 22 N -0.90 -26.39 11.24 55.49 0.62 -25.76 16 23 Si 0.90 22.07 29.58 -169.99 -5.03 17.04 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 26 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 27 H 0.05 0.90 7.43 -51.93 -0.39 0.51 16 28 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 1.19 7.63 -51.93 -0.40 0.80 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.05 0.78 6.40 -51.93 -0.33 0.45 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.40 5.51 6.77 -40.82 -0.28 5.23 16 35 H 0.13 1.32 8.14 -51.93 -0.42 0.89 16 36 H 0.14 1.74 8.14 -51.93 -0.42 1.32 16 37 H 0.20 1.96 8.06 -52.49 -0.42 1.54 16 38 H 0.20 1.70 8.06 -52.49 -0.42 1.28 16 39 H 0.09 2.66 6.15 -51.93 -0.32 2.34 16 40 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 334.08 15.07 5.03 5.03 Total: -1.00 -35.13 334.08 -6.31 -41.44 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -5.79 Total: 5.46 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: -1.19 Total: 5.54 kcal Atomic # 7 Polarization: -63.04 SS G_CDS: 0.58 Total: -62.46 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.09 Total: -12.06 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.03 Total: 17.04 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -35.13 -6.31 -41.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071537282.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.816 kcal (2) G-P(sol) polarization free energy of solvation -35.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds