Wall clock time and date at job start Tue Mar 31 2020 03:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09005 * 109.58262 * 2 1 4 4 C 1.53185 * 109.58687 * 120.43130 * 2 1 3 5 5 C 1.53044 * 109.31283 * 174.42284 * 4 2 1 6 6 C 1.53036 * 109.53975 * 298.63754 * 5 4 2 7 7 H 1.09002 * 109.50017 * 181.31393 * 6 5 4 8 8 N 1.46501 * 109.49604 * 301.37892 * 6 5 4 9 9 C 1.34780 * 120.00258 * 205.00034 * 8 6 5 10 10 O 1.21277 * 119.99631 * 359.97438 * 9 8 6 11 11 C 1.50693 * 120.00118 * 180.02562 * 9 8 6 12 12 N 1.46496 * 109.47260 * 179.97438 * 11 9 8 13 13 N 1.28602 * 124.62045 * 269.70220 * 12 11 9 14 14 C 1.31384 * 108.71747 * 179.82702 * 13 12 11 15 15 C 1.39674 * 105.90067 * 0.40890 * 14 13 12 16 16 N 1.28605 * 124.62070 * 89.99211 * 12 11 9 17 17 C 1.53189 * 109.31373 * 61.36092 * 6 5 4 18 18 N 1.46925 * 109.58506 * 239.72444 * 2 1 3 19 19 C 1.36931 * 120.63268 * 6.32259 * 18 2 1 20 20 H 1.07998 * 120.00495 * 330.19464 * 19 18 2 21 21 C 1.38815 * 119.99881 * 150.18667 * 19 18 2 22 22 N 1.31621 * 119.99984 * 344.60992 * 21 19 18 23 23 Si 1.86800 * 120.00122 * 164.60671 * 21 19 18 24 24 H 1.48504 * 109.47115 * 90.00059 * 23 21 19 25 25 H 1.48500 * 109.47480 * 210.00260 * 23 21 19 26 26 H 1.48499 * 109.47007 * 330.00291 * 23 21 19 27 27 H 1.08999 * 109.46644 * 180.27679 * 1 2 3 28 28 H 1.08991 * 109.47100 * 300.27864 * 1 2 3 29 29 H 1.09000 * 109.46822 * 60.28158 * 1 2 3 30 30 H 1.09006 * 109.49627 * 294.37245 * 4 2 1 31 31 H 1.09003 * 109.49911 * 54.47462 * 4 2 1 32 32 H 1.09005 * 109.45498 * 58.65562 * 5 4 2 33 33 H 1.09001 * 109.46049 * 178.62199 * 5 4 2 34 34 H 0.97003 * 120.00157 * 24.99983 * 8 6 5 35 35 H 1.09005 * 109.46787 * 299.99821 * 11 9 8 36 36 H 1.08997 * 109.47689 * 59.99802 * 11 9 8 37 37 H 1.08001 * 127.04643 * 180.15628 * 14 13 12 38 38 H 1.08000 * 127.04765 * 179.76423 * 15 14 13 39 39 H 1.09001 * 109.58978 * 185.58076 * 17 6 5 40 40 H 1.09001 * 109.58955 * 65.15532 * 17 6 5 41 41 H 0.97002 * 120.00123 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7310 1.2444 5 6 3.5676 -0.8495 1.1690 6 6 3.9570 -1.6655 -0.0657 7 1 5.0414 -1.7693 -0.1061 8 7 3.3413 -2.9926 0.0111 9 6 3.8982 -4.0327 -0.6406 10 8 4.9087 -3.8697 -1.2911 11 6 3.2645 -5.3976 -0.5620 12 7 4.0530 -6.3482 -1.3498 13 7 3.8580 -6.6040 -2.5950 14 6 4.7406 -7.4954 -2.9856 15 6 5.5125 -7.7888 -1.8590 16 7 5.0312 -7.0446 -0.8892 17 6 3.4651 -0.9451 -1.3250 18 7 2.0226 -0.6979 -1.1954 19 6 1.1531 -1.1151 -2.1676 20 1 0.1407 -1.3858 -1.9066 21 6 1.5730 -1.1900 -3.4886 22 7 2.6818 -0.5871 -3.8619 23 14 0.5645 -2.1467 -4.7364 24 1 -0.4324 -1.2429 -5.3646 25 1 1.4634 -2.6960 -5.7830 26 1 -0.1395 -3.2618 -4.0535 27 1 -0.3632 -1.0277 0.0050 28 1 -0.3633 0.5181 0.8874 29 1 -0.3633 0.5095 -0.8925 30 1 1.7661 -0.1696 2.1366 31 1 1.6031 -1.7270 1.2890 32 1 4.0061 0.1460 1.0995 33 1 3.9379 -1.3476 2.0650 34 1 2.5329 -3.1229 0.5311 35 1 3.2334 -5.7244 0.4775 36 1 2.2503 -5.3509 -0.9586 37 1 4.8450 -7.9180 -3.9740 38 1 6.3362 -8.4846 -1.7979 39 1 3.6519 -1.5687 -2.1993 40 1 3.9903 0.0041 -1.4317 41 1 2.9750 -0.6391 -4.7851 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071537282.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:07 Heat of formation + Delta-G solvation = 75.714088 kcal Electronic energy + Delta-G solvation = -24711.523662 eV Core-core repulsion = 21243.091840 eV Total energy + Delta-G solvation = -3468.431822 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.46865 -41.07401 -39.22642 -35.85099 -34.74771 -34.51100 -33.37904 -32.34020 -31.75092 -29.28269 -27.77111 -26.68415 -23.96160 -23.79890 -23.49581 -22.12118 -21.72024 -20.42220 -18.97713 -18.54824 -18.08188 -17.21480 -16.82547 -16.68185 -16.29851 -15.82692 -15.60312 -15.51297 -15.20492 -14.91053 -14.69520 -14.48005 -14.02535 -13.74582 -13.35143 -12.97135 -12.89999 -12.62326 -12.55968 -12.52185 -12.43211 -12.14053 -12.08072 -11.77938 -11.56923 -11.34829 -11.32814 -11.20021 -11.04982 -10.53952 -10.23125 -10.03659 -8.57452 -7.83500 -5.28739 0.76898 1.28349 1.39277 1.44088 1.49762 1.51942 1.63092 2.29458 2.49709 3.32216 3.34019 3.61381 3.63575 3.96141 4.01300 4.03932 4.10151 4.17443 4.19872 4.48617 4.57185 4.64654 4.74354 4.82578 4.96194 5.03940 5.07409 5.09439 5.13830 5.28488 5.32985 5.35585 5.58495 5.60430 5.63583 5.67511 5.73182 5.74007 6.43442 6.54415 7.18065 7.22829 7.38834 7.92752 8.43697 9.21870 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.013922 B = 0.006303 C = 0.004876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.765545 B = 4441.265930 C = 5740.560169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.152 3.848 3 H 0.010 0.990 4 C -0.118 4.118 5 C -0.109 4.109 6 C 0.131 3.869 7 H 0.060 0.940 8 N -0.680 5.680 9 C 0.496 3.504 10 O -0.585 6.585 11 C 0.123 3.877 12 N -0.154 5.154 13 N -0.323 5.323 14 C -0.031 4.031 15 C -0.023 4.023 16 N -0.307 5.307 17 C 0.172 3.828 18 N -0.593 5.593 19 C -0.234 4.234 20 H 0.081 0.919 21 C -0.055 4.055 22 N -0.938 5.938 23 Si 0.947 3.053 24 H -0.284 1.284 25 H -0.311 1.311 26 H -0.263 1.263 27 H 0.056 0.944 28 H 0.075 0.925 29 H 0.032 0.968 30 H 0.091 0.909 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.089 0.911 34 H 0.414 0.586 35 H 0.176 0.824 36 H 0.151 0.849 37 H 0.228 0.772 38 H 0.237 0.763 39 H 0.042 0.958 40 H -0.007 1.007 41 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.555 -10.518 13.138 16.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.047 3.953 3 H 0.028 0.972 4 C -0.157 4.157 5 C -0.147 4.147 6 C 0.025 3.975 7 H 0.078 0.922 8 N -0.332 5.332 9 C 0.281 3.719 10 O -0.465 6.465 11 C -0.001 4.001 12 N -0.054 5.054 13 N -0.163 5.163 14 C -0.214 4.214 15 C -0.206 4.206 16 N -0.147 5.147 17 C 0.045 3.955 18 N -0.317 5.317 19 C -0.364 4.364 20 H 0.098 0.902 21 C -0.250 4.250 22 N -0.585 5.585 23 Si 0.777 3.223 24 H -0.211 1.211 25 H -0.238 1.238 26 H -0.187 1.187 27 H 0.075 0.925 28 H 0.094 0.906 29 H 0.051 0.949 30 H 0.109 0.891 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.108 0.892 34 H 0.252 0.748 35 H 0.194 0.806 36 H 0.168 0.832 37 H 0.244 0.756 38 H 0.253 0.747 39 H 0.061 0.939 40 H 0.011 0.989 41 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -0.593 -9.455 13.319 16.345 hybrid contribution 0.185 -0.543 -2.069 2.147 sum -0.408 -9.998 11.250 15.056 Atomic orbital electron populations 1.21726 0.94559 1.01585 1.00713 1.20798 0.94273 0.93118 0.87078 0.97237 1.21961 0.94411 1.01404 0.97929 1.21665 0.97547 0.99725 0.95786 1.21463 0.96060 0.82243 0.97748 0.92191 1.45564 1.29684 1.07435 1.50490 1.20936 0.84521 0.87353 0.79102 1.90735 1.27595 1.85628 1.42506 1.21948 0.95009 0.83532 0.99597 1.47511 1.23045 1.29861 1.04978 1.74102 1.26724 1.17577 0.97921 1.25454 0.94662 0.97930 1.03330 1.25468 1.03857 1.02462 0.88800 1.73941 1.03194 1.07792 1.29805 1.20808 0.84458 0.95078 0.95132 1.44242 1.01949 1.65508 1.20002 1.19412 0.95552 1.35309 0.86150 0.90196 1.25758 0.98871 1.01229 0.99111 1.70166 1.26239 1.46159 1.15949 0.85567 0.77907 0.79310 0.79526 1.21114 1.23845 1.18722 0.92542 0.90643 0.94891 0.89082 0.91118 0.91184 0.89234 0.74799 0.80637 0.83187 0.75579 0.74650 0.93907 0.98926 0.95084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.08 7.95 71.98 0.57 -3.51 16 2 C 0.15 5.46 3.50 44.97 0.16 5.62 16 3 H 0.01 0.39 8.14 -2.38 -0.02 0.37 16 4 C -0.12 -3.01 5.21 30.67 0.16 -2.85 16 5 C -0.11 -2.94 5.58 30.62 0.17 -2.76 16 6 C 0.13 4.79 2.81 45.07 0.13 4.92 16 7 H 0.06 2.39 7.58 -2.39 -0.02 2.37 16 8 N -0.68 -21.61 4.92 -442.18 -2.17 -23.79 16 9 C 0.50 17.93 7.87 87.65 0.69 18.62 16 10 O -0.58 -27.92 16.09 -3.02 -0.05 -27.96 16 11 C 0.12 3.32 7.02 85.63 0.60 3.92 16 12 N -0.15 -5.07 3.44 -190.82 -0.66 -5.73 16 13 N -0.32 -11.40 12.05 -56.86 -0.69 -12.09 16 14 C -0.03 -0.83 12.20 85.11 1.04 0.21 16 15 C -0.02 -0.56 12.20 85.11 1.04 0.48 16 16 N -0.31 -9.43 12.05 -56.87 -0.69 -10.12 16 17 C 0.17 8.42 4.89 86.36 0.42 8.84 16 18 N -0.59 -27.45 2.90 -675.22 -1.96 -29.41 16 19 C -0.23 -12.09 8.56 84.04 0.72 -11.37 16 20 H 0.08 3.90 6.24 -2.91 -0.02 3.88 16 21 C -0.05 -3.12 4.94 84.86 0.42 -2.70 16 22 N -0.94 -58.47 11.24 21.65 0.24 -58.23 16 23 Si 0.95 46.62 29.58 68.60 2.03 48.65 16 24 H -0.28 -13.63 7.11 99.48 0.71 -12.93 16 25 H -0.31 -16.25 7.11 99.48 0.71 -15.55 16 26 H -0.26 -12.02 7.11 99.48 0.71 -11.32 16 27 H 0.06 1.74 7.43 -2.39 -0.02 1.72 16 28 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.03 1.21 7.63 -2.39 -0.02 1.20 16 30 H 0.09 1.78 8.14 -2.38 -0.02 1.76 16 31 H 0.07 1.62 6.40 -2.39 -0.02 1.61 16 32 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 33 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.41 10.16 6.77 -92.71 -0.63 9.53 16 35 H 0.18 2.98 8.14 -2.38 -0.02 2.96 16 36 H 0.15 3.58 8.14 -2.39 -0.02 3.56 16 37 H 0.23 4.12 8.06 -2.91 -0.02 4.10 16 38 H 0.24 3.33 8.06 -2.91 -0.02 3.31 16 39 H 0.04 2.55 6.15 -2.39 -0.01 2.53 16 40 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 41 H 0.24 14.97 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -83.40 334.08 2.60 -80.80 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: 0.42 Total: 18.47 kcal Atomic # 6 Polarization: 13.28 SS G_CDS: 6.11 Total: 19.40 kcal Atomic # 7 Polarization: -133.44 SS G_CDS: -5.92 Total: -139.36 kcal Atomic # 8 Polarization: -27.92 SS G_CDS: -0.05 Total: -27.96 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.65 kcal Total: -83.40 2.60 -80.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071537282.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.516 kcal (2) G-P(sol) polarization free energy of solvation -83.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds