Wall clock time and date at job start Tue Mar 31 2020 03:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09006 * 109.58376 * 2 1 4 4 C 1.53181 * 109.58898 * 120.28285 * 2 1 3 5 5 C 1.53042 * 109.31526 * 174.42331 * 4 2 1 6 6 C 1.53041 * 109.53653 * 298.63904 * 5 4 2 7 7 H 1.09001 * 109.49783 * 301.41049 * 6 5 4 8 8 N 1.46504 * 109.49651 * 181.34567 * 6 5 4 9 9 C 1.34776 * 119.99628 * 155.06236 * 8 6 5 10 10 O 1.21551 * 120.00314 * 0.02562 * 9 8 6 11 11 C 1.47811 * 119.99580 * 179.97438 * 9 8 6 12 12 C 1.40922 * 127.23533 * 179.70774 * 11 9 8 13 13 N 1.31132 * 105.77673 * 179.84161 * 12 11 9 14 14 N 1.28522 * 109.05832 * 0.43047 * 13 12 11 15 15 C 1.46495 * 124.44675 * 179.69290 * 14 13 12 16 16 N 1.28597 * 111.10992 * 359.71869 * 14 13 12 17 17 C 1.53191 * 109.31205 * 61.36278 * 6 5 4 18 18 N 1.46920 * 108.77618 * 305.36367 * 17 6 5 19 19 C 1.36940 * 120.63218 * 233.58951 * 18 17 6 20 20 H 1.07998 * 120.00273 * 150.86778 * 19 18 17 21 21 C 1.38820 * 119.99974 * 330.87128 * 19 18 17 22 22 N 1.31617 * 119.99503 * 343.81210 * 21 19 18 23 23 Si 1.86792 * 120.00123 * 163.81420 * 21 19 18 24 24 H 1.48497 * 109.47133 * 94.30767 * 23 21 19 25 25 H 1.48497 * 109.47171 * 214.30730 * 23 21 19 26 26 H 1.48500 * 109.47181 * 334.30917 * 23 21 19 27 27 H 1.08997 * 109.46885 * 299.71246 * 1 2 3 28 28 H 1.08998 * 109.47149 * 59.71852 * 1 2 3 29 29 H 1.08997 * 109.46744 * 179.71532 * 1 2 3 30 30 H 1.09007 * 109.49975 * 54.47378 * 4 2 1 31 31 H 1.09003 * 109.50153 * 294.37844 * 4 2 1 32 32 H 1.09002 * 109.46354 * 178.61510 * 5 4 2 33 33 H 1.09003 * 109.45571 * 58.65447 * 5 4 2 34 34 H 0.96994 * 120.00354 * 335.06604 * 8 6 5 35 35 H 1.08007 * 127.11216 * 359.97438 * 12 11 9 36 36 H 1.09000 * 109.46785 * 270.02865 * 15 14 13 37 37 H 1.08997 * 109.47160 * 30.02172 * 15 14 13 38 38 H 1.09000 * 109.47239 * 150.03046 * 15 14 13 39 39 H 1.09000 * 109.58651 * 65.15348 * 17 6 5 40 40 H 1.09006 * 109.58532 * 185.57482 * 17 6 5 41 41 H 0.97005 * 119.99443 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7277 1.2462 5 6 3.5676 -0.8464 1.1711 6 6 3.9570 -1.6656 -0.0615 7 1 3.4985 -2.6527 -0.0021 8 7 5.4143 -1.8059 -0.1150 9 6 5.9675 -2.8490 -0.7650 10 8 5.2573 -3.6730 -1.3072 11 6 7.4378 -2.9902 -0.8194 12 6 8.1733 -4.0154 -1.4469 13 7 9.4356 -3.7266 -1.2399 14 7 9.5109 -2.6450 -0.5497 15 6 10.7652 -2.0209 -0.1216 16 7 8.3407 -2.1829 -0.2837 17 6 3.4651 -0.9484 -1.3226 18 7 2.0227 -0.7009 -1.1936 19 6 1.1538 -1.1153 -2.1676 20 1 0.1366 -1.3713 -1.9105 21 6 1.5805 -1.2063 -3.4855 22 7 2.6908 -0.6071 -3.8605 23 14 0.5790 -2.1790 -4.7264 24 1 -0.3432 -1.2634 -5.4449 25 1 1.4929 -2.8265 -5.7015 26 1 -0.2088 -3.2205 -4.0194 27 1 -0.3633 0.5094 0.8925 28 1 -0.3633 0.5182 -0.8874 29 1 -0.3633 -1.0276 -0.0051 30 1 1.6031 -1.7237 1.2934 31 1 1.7661 -0.1641 2.1370 32 1 3.9380 -1.3421 2.0685 33 1 4.0062 0.1489 1.0990 34 1 5.9811 -1.1481 0.3174 35 1 7.7790 -4.8627 -1.9884 36 1 11.0552 -2.4182 0.8511 37 1 11.5463 -2.2380 -0.8502 38 1 10.6274 -0.9422 -0.0471 39 1 3.9904 0.0005 -1.4317 40 1 3.6519 -1.5742 -2.1953 41 1 2.9891 -0.6710 -4.7813 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071890204.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:20 Heat of formation + Delta-G solvation = 70.918763 kcal Electronic energy + Delta-G solvation = -23980.404194 eV Core-core repulsion = 20511.764431 eV Total energy + Delta-G solvation = -3468.639763 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.71751 -40.86786 -39.19033 -36.06226 -34.83261 -34.64627 -33.83162 -32.13138 -31.70204 -29.03665 -27.72752 -26.83338 -25.04227 -23.94166 -23.10117 -22.26942 -21.45979 -20.89924 -18.89934 -18.33555 -18.02690 -17.92314 -17.28342 -16.71701 -15.94837 -15.83742 -15.64907 -15.43985 -15.09396 -14.96062 -14.46800 -14.13653 -13.83813 -13.65694 -13.51967 -13.09526 -13.02264 -12.76800 -12.67761 -12.52997 -12.27145 -12.16886 -12.11382 -11.98960 -11.67942 -11.55469 -11.48021 -11.17738 -11.09424 -10.53429 -10.49771 -10.10089 -8.61155 -7.83730 -5.29225 0.18790 0.83759 1.25987 1.42697 1.47222 1.55093 2.03659 2.20293 2.52726 2.84582 3.33193 3.64191 3.80217 3.93061 4.03551 4.10822 4.26481 4.30753 4.32253 4.40515 4.45548 4.61627 4.66196 4.72919 4.81804 4.89403 4.90962 5.02722 5.08819 5.19972 5.29732 5.33108 5.43350 5.52572 5.56963 5.63071 5.72879 5.79939 6.40540 6.48917 7.00122 7.13242 7.19446 7.91713 8.41273 9.21870 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.017011 B = 0.004562 C = 0.003841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.612629 B = 6136.690162 C = 7288.081261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.153 3.847 3 H 0.021 0.979 4 C -0.117 4.117 5 C -0.108 4.108 6 C 0.131 3.869 7 H 0.060 0.940 8 N -0.693 5.693 9 C 0.602 3.398 10 O -0.565 6.565 11 C -0.063 4.063 12 C 0.026 3.974 13 N -0.295 5.295 14 N -0.133 5.133 15 C 0.087 3.913 16 N -0.249 5.249 17 C 0.180 3.820 18 N -0.603 5.603 19 C -0.251 4.251 20 H 0.076 0.924 21 C -0.053 4.053 22 N -0.935 5.935 23 Si 0.956 3.044 24 H -0.281 1.281 25 H -0.300 1.300 26 H -0.269 1.269 27 H 0.079 0.921 28 H 0.037 0.963 29 H 0.047 0.953 30 H 0.055 0.945 31 H 0.097 0.903 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.413 0.587 35 H 0.218 0.782 36 H 0.117 0.883 37 H 0.125 0.875 38 H 0.123 0.877 39 H -0.004 1.004 40 H 0.044 0.956 41 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.011 -0.385 13.488 19.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.047 3.953 3 H 0.039 0.961 4 C -0.156 4.156 5 C -0.146 4.146 6 C 0.025 3.975 7 H 0.078 0.922 8 N -0.343 5.343 9 C 0.385 3.615 10 O -0.442 6.442 11 C -0.224 4.224 12 C -0.156 4.156 13 N -0.135 5.135 14 N -0.038 5.038 15 C -0.050 4.050 16 N -0.099 5.099 17 C 0.053 3.947 18 N -0.327 5.327 19 C -0.381 4.381 20 H 0.094 0.906 21 C -0.248 4.248 22 N -0.581 5.581 23 Si 0.785 3.215 24 H -0.208 1.208 25 H -0.227 1.227 26 H -0.193 1.193 27 H 0.098 0.902 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.115 0.885 32 H 0.104 0.896 33 H 0.090 0.910 34 H 0.250 0.750 35 H 0.234 0.766 36 H 0.135 0.865 37 H 0.143 0.857 38 H 0.142 0.858 39 H 0.014 0.986 40 H 0.062 0.938 41 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 14.694 -0.361 13.367 19.868 hybrid contribution -0.837 -0.549 -1.537 1.834 sum 13.858 -0.910 11.830 18.243 Atomic orbital electron populations 1.21735 0.94679 1.01219 1.01046 1.20815 0.94352 0.93343 0.86742 0.96138 1.21952 0.94279 1.01068 0.98326 1.21657 0.97285 0.99891 0.95741 1.21650 0.78212 0.99694 0.97976 0.92206 1.45753 1.08124 1.26153 1.54313 1.16960 0.84538 0.81683 0.78270 1.90822 1.62323 1.44144 1.46896 1.22846 0.94432 0.97988 1.07157 1.25083 0.87286 1.01452 1.01829 1.74007 1.21880 1.04255 1.13402 1.48697 1.07088 1.14720 1.33269 1.22839 0.77606 1.00465 1.04059 1.74309 0.92006 1.23713 1.19893 1.20751 0.83850 0.95266 0.94861 1.44325 1.02453 1.65559 1.20345 1.19500 0.95283 1.36636 0.86701 0.90594 1.25793 0.99080 1.00996 0.98944 1.70177 1.25961 1.45644 1.16362 0.85418 0.77933 0.78993 0.79159 1.20771 1.22722 1.19332 0.90249 0.94371 0.93429 0.92633 0.88488 0.89573 0.90980 0.75001 0.76589 0.86463 0.85669 0.85840 0.98571 0.93776 0.94692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.65 7.95 71.98 0.57 -4.08 16 2 C 0.15 6.09 3.50 44.97 0.16 6.24 16 3 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 4 C -0.12 -3.63 5.37 30.67 0.16 -3.46 16 5 C -0.11 -3.25 5.35 30.62 0.16 -3.08 16 6 C 0.13 5.19 2.60 45.07 0.12 5.31 16 7 H 0.06 2.70 7.58 -2.39 -0.02 2.69 16 8 N -0.69 -24.31 5.08 -445.07 -2.26 -26.57 16 9 C 0.60 23.26 7.80 86.78 0.68 23.94 16 10 O -0.57 -26.71 16.62 -3.88 -0.06 -26.77 16 11 C -0.06 -2.02 7.21 42.25 0.30 -1.72 16 12 C 0.03 0.74 12.04 85.46 1.03 1.76 16 13 N -0.29 -7.39 12.01 -56.16 -0.67 -8.07 16 14 N -0.13 -2.86 4.35 -206.55 -0.90 -3.75 16 15 C 0.09 0.73 11.55 127.77 1.48 2.21 16 16 N -0.25 -6.61 11.84 -48.16 -0.57 -7.18 16 17 C 0.18 9.17 4.87 86.36 0.42 9.59 16 18 N -0.60 -30.80 2.99 -675.23 -2.02 -32.81 16 19 C -0.25 -14.14 8.60 84.03 0.72 -13.42 16 20 H 0.08 4.10 6.21 -2.91 -0.02 4.09 16 21 C -0.05 -3.13 4.93 84.86 0.42 -2.72 16 22 N -0.93 -58.73 11.22 21.65 0.24 -58.48 16 23 Si 0.96 47.81 29.58 68.60 2.03 49.84 16 24 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 25 H -0.30 -15.40 7.11 99.48 0.71 -14.69 16 26 H -0.27 -12.84 7.11 99.48 0.71 -12.14 16 27 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.04 1.52 7.66 -2.39 -0.02 1.50 16 29 H 0.05 1.75 7.40 -2.39 -0.02 1.73 16 30 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 31 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.41 11.89 8.37 -92.71 -0.78 11.11 16 35 H 0.22 5.46 8.06 -2.91 -0.02 5.44 16 36 H 0.12 0.47 8.14 -2.39 -0.02 0.46 16 37 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 40 H 0.04 2.69 6.11 -2.38 -0.01 2.68 16 41 H 0.24 15.04 8.31 -92.70 -0.77 14.27 16 Total: -1.00 -79.09 337.88 2.28 -76.81 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: 0.27 Total: 16.42 kcal Atomic # 6 Polarization: 14.35 SS G_CDS: 6.22 Total: 20.57 kcal Atomic # 7 Polarization: -130.69 SS G_CDS: -6.18 Total: -136.87 kcal Atomic # 8 Polarization: -26.71 SS G_CDS: -0.06 Total: -26.77 kcal Atomic # 14 Polarization: 47.81 SS G_CDS: 2.03 Total: 49.84 kcal Total: -79.09 2.28 -76.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071890204.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.727 kcal (2) G-P(sol) polarization free energy of solvation -79.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds