Wall clock time and date at job start Tue Mar 31 2020 03:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.58330 * 2 1 4 4 C 1.53188 * 109.58801 * 239.71963 * 2 1 3 5 5 C 1.53039 * 109.31199 * 185.57682 * 4 2 1 6 6 C 1.53039 * 109.53959 * 61.36058 * 5 4 2 7 7 H 1.09003 * 109.49847 * 178.65002 * 6 5 4 8 8 N 1.46497 * 109.49897 * 58.59023 * 6 5 4 9 9 C 1.34777 * 120.00571 * 154.99911 * 8 6 5 10 10 O 1.21565 * 119.99412 * 359.97438 * 9 8 6 11 11 C 1.47796 * 120.00234 * 179.97438 * 9 8 6 12 12 C 1.40927 * 127.23439 * 180.02562 * 11 9 8 13 13 N 1.31134 * 105.77437 * 180.02562 * 12 11 9 14 14 N 1.28519 * 109.05798 * 359.97438 * 13 12 11 15 15 C 1.46502 * 124.44010 * 179.97438 * 14 13 12 16 16 N 1.28589 * 111.11541 * 0.02562 * 14 13 12 17 17 C 1.53189 * 109.31252 * 298.63194 * 6 5 4 18 18 N 1.46927 * 109.58848 * 120.42300 * 2 1 3 19 19 C 1.36933 * 120.63278 * 353.37849 * 18 2 1 20 20 H 1.08006 * 119.99981 * 29.54374 * 19 18 2 21 21 C 1.38814 * 120.00416 * 209.54909 * 19 18 2 22 22 N 1.31620 * 119.99657 * 16.12550 * 21 19 18 23 23 Si 1.86796 * 120.00181 * 196.13198 * 21 19 18 24 24 H 1.48497 * 109.47346 * 92.88712 * 23 21 19 25 25 H 1.48496 * 109.46919 * 212.88974 * 23 21 19 26 26 H 1.48506 * 109.47190 * 332.88883 * 23 21 19 27 27 H 1.09000 * 109.46801 * 180.28492 * 1 2 3 28 28 H 1.09001 * 109.46850 * 300.28257 * 1 2 3 29 29 H 1.08995 * 109.47205 * 60.28481 * 1 2 3 30 30 H 1.09001 * 109.50134 * 65.62249 * 4 2 1 31 31 H 1.09002 * 109.49508 * 305.52478 * 4 2 1 32 32 H 1.09007 * 109.45907 * 301.33808 * 5 4 2 33 33 H 1.08996 * 109.44982 * 181.37779 * 5 4 2 34 34 H 0.97007 * 119.99981 * 334.99629 * 8 6 5 35 35 H 1.07993 * 127.11115 * 0.02562 * 12 11 9 36 36 H 1.09000 * 109.47110 * 269.99609 * 15 14 13 37 37 H 1.08999 * 109.47328 * 30.00049 * 15 14 13 38 38 H 1.09006 * 109.46698 * 150.00337 * 15 14 13 39 39 H 1.09008 * 109.58523 * 174.41823 * 17 6 5 40 40 H 1.08994 * 109.59155 * 294.84718 * 17 6 5 41 41 H 0.97002 * 119.99951 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7277 -1.2463 5 6 3.5675 -0.8464 -1.1712 6 6 3.9570 -1.6656 0.0614 7 1 5.0413 -1.7700 0.1012 8 7 3.3408 -2.9922 -0.0185 9 6 3.8973 -4.0341 0.6306 10 8 4.9110 -3.8730 1.2819 11 6 3.2753 -5.3724 0.5504 12 6 3.7238 -6.5593 1.1636 13 7 2.8652 -7.4872 0.8149 14 7 1.9637 -6.9636 0.0633 15 6 0.8387 -7.7007 -0.5175 16 7 2.1793 -5.7082 -0.1130 17 6 3.4652 -0.9484 1.3225 18 7 2.0226 -0.7009 1.1936 19 6 1.1539 -1.1154 2.1676 20 1 0.1384 -1.3775 1.9096 21 6 1.5783 -1.1984 3.4867 22 7 2.6854 -0.5931 3.8611 23 14 0.5782 -2.1694 4.7302 24 1 1.0931 -3.5604 4.8017 25 1 0.6930 -1.5298 6.0654 26 1 -0.8466 -2.1899 4.3120 27 1 -0.3633 -1.0277 0.0051 28 1 -0.3633 0.5182 0.8875 29 1 -0.3633 0.5094 -0.8925 30 1 1.7661 -0.1641 -2.1371 31 1 1.6031 -1.7236 -1.2935 32 1 4.0062 0.1490 -1.0992 33 1 3.9377 -1.3421 -2.0685 34 1 2.5321 -3.1209 -0.5385 35 1 4.5945 -6.6799 1.7909 36 1 1.1275 -8.0966 -1.4911 37 1 0.5639 -8.5235 0.1424 38 1 -0.0126 -7.0301 -0.6360 39 1 3.6519 -1.5743 2.1952 40 1 3.9904 0.0004 1.4317 41 1 2.9822 -0.6514 4.7828 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071890206.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:26 Heat of formation + Delta-G solvation = 98.439516 kcal Electronic energy + Delta-G solvation = -24773.529458 eV Core-core repulsion = 21306.083084 eV Total energy + Delta-G solvation = -3467.446374 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.50291 -39.32891 -37.47236 -34.11390 -33.74153 -32.79073 -32.48796 -30.55892 -29.84867 -27.98539 -26.20494 -24.99711 -23.83862 -22.14033 -21.96511 -20.72386 -20.19408 -18.67641 -17.67678 -16.90440 -16.81207 -16.21291 -15.34957 -14.93791 -14.68471 -14.25449 -13.99838 -13.87204 -13.48625 -13.24573 -13.10020 -12.99614 -12.76500 -12.47994 -11.93409 -11.73275 -11.20678 -11.13189 -10.94761 -10.90867 -10.83513 -10.69586 -10.34380 -10.31896 -10.27950 -9.92881 -9.69286 -9.45856 -9.40194 -9.30184 -8.40758 -8.33969 -6.55679 -5.71059 -3.14513 1.53486 2.10755 2.22546 3.40877 3.47118 3.49052 3.57602 3.81041 4.08886 4.53939 4.81172 4.87115 5.08102 5.10552 5.32899 5.35150 5.39800 5.49748 5.54748 5.63989 5.80457 6.04643 6.09648 6.15365 6.19253 6.36328 6.38570 6.47314 6.54710 6.58957 6.64793 6.71669 6.92618 7.08144 7.16082 7.40787 7.71654 7.88351 8.03736 8.28133 8.53406 8.74273 9.27865 9.92371 10.48654 11.37074 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.012229 B = 0.006700 C = 0.005660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.138027 B = 4177.867143 C = 4946.057061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.131 4.131 5 C -0.118 4.118 6 C 0.117 3.883 7 H 0.079 0.921 8 N -0.682 5.682 9 C 0.605 3.395 10 O -0.534 6.534 11 C -0.031 4.031 12 C 0.031 3.969 13 N -0.297 5.297 14 N -0.151 5.151 15 C 0.106 3.894 16 N -0.250 5.250 17 C 0.162 3.838 18 N -0.582 5.582 19 C -0.248 4.248 20 H 0.067 0.933 21 C 0.007 3.993 22 N -0.898 5.898 23 Si 0.894 3.106 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.280 1.280 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.036 0.964 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.052 0.948 34 H 0.402 0.598 35 H 0.207 0.793 36 H 0.090 0.910 37 H 0.103 0.897 38 H 0.105 0.895 39 H 0.095 0.905 40 H 0.028 0.972 41 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.939 -9.256 -12.015 15.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.059 3.941 3 H 0.043 0.957 4 C -0.171 4.171 5 C -0.156 4.156 6 C 0.011 3.989 7 H 0.097 0.903 8 N -0.332 5.332 9 C 0.387 3.613 10 O -0.410 6.410 11 C -0.195 4.195 12 C -0.152 4.152 13 N -0.137 5.137 14 N -0.053 5.053 15 C -0.033 4.033 16 N -0.098 5.098 17 C 0.035 3.965 18 N -0.305 5.305 19 C -0.378 4.378 20 H 0.085 0.915 21 C -0.192 4.192 22 N -0.542 5.542 23 Si 0.724 3.276 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.206 1.206 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.070 0.930 34 H 0.237 0.763 35 H 0.223 0.777 36 H 0.108 0.892 37 H 0.122 0.878 38 H 0.123 0.877 39 H 0.114 0.886 40 H 0.046 0.954 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.218 -9.769 -11.920 15.571 hybrid contribution -0.266 -0.200 0.928 0.986 sum -2.484 -9.969 -10.992 15.046 Atomic orbital electron populations 1.21791 0.96173 1.01232 1.00078 1.20460 0.92876 0.93615 0.87168 0.95731 1.22077 0.95164 1.00774 0.99075 1.21686 0.97066 1.00129 0.96727 1.21868 0.97068 0.81436 0.98490 0.90332 1.45701 1.29188 1.08109 1.50199 1.16535 0.83519 0.81392 0.79830 1.90789 1.24806 1.83906 1.41487 1.23288 0.95458 0.97852 1.02866 1.24814 1.00646 0.87697 1.02051 1.73948 1.01236 1.27899 1.10628 1.47971 1.20329 1.03757 1.33265 1.22174 0.84819 0.96864 0.99482 1.74392 1.16752 0.97880 1.20824 1.21184 0.83853 0.97117 0.94339 1.44024 1.02667 1.64676 1.19123 1.19068 0.94878 1.37782 0.86058 0.91547 1.25031 0.97817 0.99458 0.96916 1.69991 1.24178 1.43331 1.16706 0.86413 0.79689 0.80168 0.81299 1.21685 1.21767 1.20577 0.92972 0.92098 0.94469 0.92851 0.92593 0.90961 0.92976 0.76275 0.77664 0.89152 0.87838 0.87666 0.88638 0.95444 0.93692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 7.95 37.16 0.30 -2.18 16 2 C 0.17 3.28 3.50 -67.60 -0.24 3.04 16 3 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -2.12 5.21 -26.61 -0.14 -2.26 16 5 C -0.12 -1.87 5.59 -26.69 -0.15 -2.02 16 6 C 0.12 2.25 2.81 -67.81 -0.19 2.06 16 7 H 0.08 1.52 7.58 -51.93 -0.39 1.12 16 8 N -0.68 -12.88 4.91 -54.65 -0.27 -13.15 16 9 C 0.61 12.15 7.80 -12.35 -0.10 12.05 16 10 O -0.53 -12.10 16.61 5.31 0.09 -12.01 16 11 C -0.03 -0.55 7.21 -82.68 -0.60 -1.15 16 12 C 0.03 0.50 12.04 -16.83 -0.20 0.30 16 13 N -0.30 -4.43 12.01 30.90 0.37 -4.06 16 14 N -0.15 -2.07 4.35 -16.63 -0.07 -2.14 16 15 C 0.11 0.81 11.55 59.85 0.69 1.50 16 16 N -0.25 -4.05 11.84 33.42 0.40 -3.65 16 17 C 0.16 3.86 4.89 -3.71 -0.02 3.84 16 18 N -0.58 -13.90 2.90 -164.77 -0.48 -14.38 16 19 C -0.25 -6.62 8.58 -15.06 -0.13 -6.75 16 20 H 0.07 1.75 6.22 -52.48 -0.33 1.42 16 21 C 0.01 0.19 4.92 -17.43 -0.09 0.11 16 22 N -0.90 -26.54 11.25 55.49 0.62 -25.92 16 23 Si 0.89 22.46 29.58 -169.99 -5.03 17.43 16 24 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 25 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 26 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 27 H 0.05 0.97 7.40 -51.93 -0.38 0.58 16 28 H 0.06 1.22 7.66 -51.93 -0.40 0.82 16 29 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.91 6.40 -51.93 -0.33 0.58 16 32 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.40 7.14 6.54 -40.82 -0.27 6.88 16 35 H 0.21 2.79 8.06 -52.49 -0.42 2.37 16 36 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.10 2.69 6.14 -51.92 -0.32 2.37 16 40 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 334.41 15.07 5.04 5.04 Total: -1.00 -33.35 334.41 -5.97 -39.32 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -5.78 Total: 5.01 kcal Atomic # 6 Polarization: 9.39 SS G_CDS: -0.86 Total: 8.53 kcal Atomic # 7 Polarization: -63.88 SS G_CDS: 0.57 Total: -63.31 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: 0.09 Total: -12.01 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.03 Total: 17.43 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.35 -5.97 -39.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071890206.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.760 kcal (2) G-P(sol) polarization free energy of solvation -33.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds