Wall clock time and date at job start Tue Mar 31 2020 03:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.58580 * 2 1 4 4 C 1.53190 * 109.58830 * 120.42449 * 2 1 3 5 5 C 1.53038 * 109.31525 * 174.42266 * 4 2 1 6 6 C 1.53042 * 109.53559 * 298.63696 * 5 4 2 7 7 H 1.09005 * 109.52809 * 301.39198 * 6 5 4 8 8 N 1.46505 * 109.49735 * 181.31849 * 6 5 4 9 9 C 1.34769 * 120.00123 * 155.16393 * 8 6 5 10 10 O 1.21280 * 120.00052 * 359.97438 * 9 8 6 11 11 C 1.50704 * 120.00033 * 179.97438 * 9 8 6 12 12 C 1.50697 * 109.47042 * 179.97438 * 11 9 8 13 13 N 1.33239 * 125.53014 * 89.99766 * 12 11 9 14 14 C 1.30828 * 109.83124 * 179.97438 * 13 12 11 15 15 N 1.34429 * 108.07865 * 0.02562 * 14 13 12 16 16 H 0.96995 * 126.82599 * 179.97438 * 15 14 13 17 17 N 1.30719 * 125.52520 * 270.27623 * 12 11 9 18 18 C 1.53187 * 109.31525 * 61.36214 * 6 5 4 19 19 N 1.46920 * 108.77883 * 305.36554 * 18 6 5 20 20 C 1.36935 * 120.63216 * 233.58775 * 19 18 6 21 21 H 1.08006 * 120.00316 * 151.54970 * 20 19 18 22 22 C 1.38810 * 120.00182 * 331.54192 * 20 19 18 23 23 N 1.31620 * 120.00316 * 160.53708 * 22 20 19 24 24 Si 1.86801 * 119.99764 * 340.54472 * 22 20 19 25 25 H 1.48499 * 109.47543 * 94.83339 * 24 22 20 26 26 H 1.48507 * 109.46738 * 214.83431 * 24 22 20 27 27 H 1.48503 * 109.47009 * 334.82995 * 24 22 20 28 28 H 1.08998 * 109.46823 * 180.28405 * 1 2 3 29 29 H 1.08993 * 109.46819 * 300.28224 * 1 2 3 30 30 H 1.09003 * 109.47246 * 60.28578 * 1 2 3 31 31 H 1.08998 * 109.49724 * 294.37898 * 4 2 1 32 32 H 1.09005 * 109.49832 * 54.47182 * 4 2 1 33 33 H 1.08992 * 109.46103 * 178.61955 * 5 4 2 34 34 H 1.08995 * 109.45848 * 58.65520 * 5 4 2 35 35 H 0.97000 * 119.99890 * 335.15543 * 8 6 5 36 36 H 1.08995 * 109.47501 * 59.99525 * 11 9 8 37 37 H 1.09000 * 109.46539 * 299.99395 * 11 9 8 38 38 H 1.08007 * 125.96472 * 179.97438 * 14 13 12 39 39 H 1.09008 * 109.58778 * 65.15376 * 18 6 5 40 40 H 1.08997 * 109.59045 * 185.57386 * 18 6 5 41 41 H 0.97001 * 120.00357 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7309 1.2445 5 6 3.5675 -0.8494 1.1691 6 6 3.9569 -1.6656 -0.0655 7 1 3.4988 -2.6531 -0.0088 8 7 5.4143 -1.8052 -0.1197 9 6 5.9677 -2.8454 -0.7740 10 8 5.2593 -3.6662 -1.3175 11 6 7.4669 -2.9887 -0.8302 12 6 7.8243 -4.2250 -1.6142 13 7 8.0295 -4.2753 -2.9297 14 6 8.3217 -5.4995 -3.2869 15 7 8.3079 -6.2700 -2.1855 16 1 8.4866 -7.2222 -2.1398 17 7 7.9781 -5.4232 -1.1146 18 6 3.4650 -0.9454 -1.3249 19 7 2.0226 -0.6981 -1.1954 20 6 1.1538 -1.1101 -2.1703 21 1 0.1334 -1.3562 -1.9156 22 6 1.5843 -1.2113 -3.4861 23 7 0.9109 -1.9480 -4.3441 24 14 3.1196 -0.3021 -4.0389 25 1 4.2907 -1.2113 -3.9547 26 1 2.9467 0.1537 -5.4417 27 1 3.3418 0.8741 -3.1601 28 1 -0.3633 -1.0277 0.0051 29 1 -0.3633 0.5182 0.8874 30 1 -0.3634 0.5094 -0.8926 31 1 1.7660 -0.1694 2.1366 32 1 1.6030 -1.7269 1.2892 33 1 3.9378 -1.3473 2.0651 34 1 4.0061 0.1460 1.0995 35 1 5.9809 -1.1489 0.3152 36 1 7.8620 -3.0739 0.1820 37 1 7.8975 -2.1130 -1.3158 38 1 8.5357 -5.8331 -4.2916 39 1 3.9903 0.0038 -1.4317 40 1 3.6518 -1.5690 -2.1991 41 1 1.2120 -2.0191 -5.2635 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071973300.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:42 Heat of formation + Delta-G solvation = 75.226546 kcal Electronic energy + Delta-G solvation = -24122.181762 eV Core-core repulsion = 20653.728798 eV Total energy + Delta-G solvation = -3468.452964 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.15439 -39.59092 -37.83274 -34.53539 -33.35361 -32.76718 -31.79742 -30.90872 -30.62081 -28.87526 -26.05622 -24.78424 -22.95709 -22.71366 -21.51571 -20.50175 -19.94008 -19.22077 -18.41673 -17.02314 -16.51783 -15.97932 -15.57155 -15.26422 -14.87095 -14.61028 -14.42976 -13.73987 -13.63680 -13.44092 -13.32500 -12.97293 -12.46411 -12.21707 -12.07789 -12.02652 -11.65645 -11.37617 -11.22491 -10.73850 -10.66058 -10.31539 -10.24149 -10.20662 -10.09824 -9.95168 -9.85893 -9.60004 -9.48602 -9.28045 -8.78617 -8.42779 -6.85428 -5.83828 -3.21233 1.53563 2.56296 2.75104 2.92411 3.48073 3.52306 3.56850 3.59567 4.03291 4.53587 4.65459 4.81439 4.93007 5.08276 5.24125 5.26974 5.28422 5.43080 5.51363 5.56755 5.80065 5.97768 6.06331 6.11862 6.16074 6.28165 6.29458 6.31518 6.38723 6.51804 6.58954 6.66671 6.73006 6.92127 6.93236 7.04507 7.13793 7.77373 8.01190 8.07105 8.45519 8.53369 9.03802 9.83771 10.19326 11.31670 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.016706 B = 0.005108 C = 0.004275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.598637 B = 5480.363766 C = 6547.436600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.169 3.831 3 H 0.030 0.970 4 C -0.128 4.128 5 C -0.116 4.116 6 C 0.127 3.873 7 H 0.090 0.910 8 N -0.725 5.725 9 C 0.514 3.486 10 O -0.518 6.518 11 C -0.050 4.050 12 C 0.251 3.749 13 N -0.532 5.532 14 C 0.263 3.737 15 N -0.485 5.485 16 H 0.440 0.560 17 N -0.306 5.306 18 C 0.122 3.878 19 N -0.598 5.598 20 C -0.262 4.262 21 H 0.092 0.908 22 C 0.028 3.972 23 N -0.907 5.907 24 Si 0.878 3.122 25 H -0.285 1.285 26 H -0.305 1.305 27 H -0.271 1.271 28 H 0.057 0.943 29 H 0.040 0.960 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.395 0.605 36 H 0.116 0.884 37 H 0.121 0.879 38 H 0.223 0.777 39 H 0.024 0.976 40 H 0.078 0.922 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.694 -2.249 9.607 18.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.063 3.937 3 H 0.047 0.953 4 C -0.167 4.167 5 C -0.154 4.154 6 C 0.021 3.979 7 H 0.108 0.892 8 N -0.377 5.377 9 C 0.298 3.702 10 O -0.392 6.392 11 C -0.092 4.092 12 C -0.032 4.032 13 N -0.260 5.260 14 C -0.036 4.036 15 N -0.203 5.203 16 H 0.286 0.714 17 N -0.135 5.135 18 C -0.005 4.005 19 N -0.322 5.322 20 C -0.390 4.390 21 H 0.110 0.890 22 C -0.171 4.171 23 N -0.550 5.550 24 Si 0.708 3.292 25 H -0.213 1.213 26 H -0.233 1.233 27 H -0.196 1.196 28 H 0.076 0.924 29 H 0.059 0.941 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.229 0.771 36 H 0.134 0.866 37 H 0.139 0.861 38 H 0.239 0.761 39 H 0.042 0.958 40 H 0.096 0.904 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 14.991 -2.743 9.557 17.989 hybrid contribution 1.391 -0.049 -0.599 1.515 sum 16.382 -2.792 8.959 18.879 Atomic orbital electron populations 1.21815 0.95272 1.01947 1.00431 1.20502 0.93695 0.93334 0.86172 0.95260 1.22049 0.94138 1.01715 0.98832 1.21678 0.97553 0.99592 0.96585 1.21762 0.77961 1.01171 0.96985 0.89178 1.46040 1.08460 1.27182 1.56037 1.20133 0.89387 0.81767 0.78949 1.90804 1.63186 1.41680 1.43556 1.19920 0.94720 0.93767 1.00839 1.23297 0.97317 0.93231 0.89346 1.70373 1.22146 1.20752 1.12728 1.26072 0.96113 0.86655 0.94791 1.48055 1.54392 1.12205 1.05661 0.71424 1.77934 1.23847 1.01622 1.10117 1.21682 0.85472 0.96872 0.96500 1.44371 1.01657 1.65528 1.20679 1.18897 0.95360 1.38977 0.85725 0.89047 1.25278 0.97381 0.98569 0.95886 1.69818 1.41213 1.39144 1.04835 0.86986 0.84133 0.81149 0.76904 1.21268 1.23299 1.19611 0.92393 0.94125 0.91707 0.92213 0.91638 0.92419 0.92084 0.77148 0.86618 0.86127 0.76100 0.95771 0.90407 0.92878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 7.94 37.16 0.30 -2.25 16 2 C 0.17 3.31 3.50 -67.60 -0.24 3.07 16 3 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 4 C -0.13 -2.05 5.37 -26.61 -0.14 -2.20 16 5 C -0.12 -1.72 5.35 -26.69 -0.14 -1.86 16 6 C 0.13 2.36 2.60 -67.81 -0.18 2.18 16 7 H 0.09 1.97 7.58 -51.93 -0.39 1.57 16 8 N -0.73 -11.04 5.08 -53.69 -0.27 -11.31 16 9 C 0.51 8.93 7.79 -10.99 -0.09 8.84 16 10 O -0.52 -12.00 15.70 5.56 0.09 -11.91 16 11 C -0.05 -0.64 6.33 -29.03 -0.18 -0.83 16 12 C 0.25 3.90 6.63 -156.85 -1.04 2.86 16 13 N -0.53 -8.30 11.19 -11.98 -0.13 -8.43 16 14 C 0.26 2.89 13.13 -90.66 -1.19 1.70 16 15 N -0.49 -5.18 7.45 29.53 0.22 -4.96 16 16 H 0.44 2.79 8.96 -182.34 -1.63 1.16 16 17 N -0.31 -4.52 12.80 32.42 0.41 -4.10 16 18 C 0.12 2.80 3.76 -3.72 -0.01 2.79 16 19 N -0.60 -14.53 2.76 -164.78 -0.45 -14.99 16 20 C -0.26 -7.48 9.06 -15.06 -0.14 -7.62 16 21 H 0.09 2.73 6.37 -52.48 -0.33 2.39 16 22 C 0.03 0.85 5.24 -17.43 -0.09 0.76 16 23 N -0.91 -29.14 13.97 55.49 0.78 -28.37 16 24 Si 0.88 23.88 24.35 -169.99 -4.14 19.74 16 25 H -0.29 -7.94 6.72 56.52 0.38 -7.56 16 26 H -0.30 -8.35 7.11 56.52 0.40 -7.95 16 27 H -0.27 -7.07 6.44 56.52 0.36 -6.71 16 28 H 0.06 1.14 7.45 -51.93 -0.39 0.75 16 29 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.06 1.31 7.61 -51.93 -0.40 0.92 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.40 4.25 8.60 -40.82 -0.35 3.90 16 36 H 0.12 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.12 1.28 8.14 -51.93 -0.42 0.85 16 38 H 0.22 1.23 8.06 -52.48 -0.42 0.81 16 39 H 0.02 0.55 6.95 -51.92 -0.36 0.19 16 40 H 0.08 2.12 4.61 -51.93 -0.24 1.88 16 41 H 0.26 8.04 8.31 -40.82 -0.34 7.70 16 LS Contribution 329.91 15.07 4.97 4.97 Total: -1.00 -40.48 329.91 -8.77 -49.25 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -7.09 Total: 2.67 kcal Atomic # 6 Polarization: 10.59 SS G_CDS: -3.15 Total: 7.44 kcal Atomic # 7 Polarization: -72.71 SS G_CDS: 0.55 Total: -72.16 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.09 Total: -11.91 kcal Atomic # 14 Polarization: 23.88 SS G_CDS: -4.14 Total: 19.74 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -40.48 -8.77 -49.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071973300.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.481 kcal (2) G-P(sol) polarization free energy of solvation -40.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds