Wall clock time and date at job start Tue Mar 31 2020 03:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.58580 * 2 1 4 4 C 1.53190 * 109.58830 * 120.42449 * 2 1 3 5 5 C 1.53038 * 109.31525 * 174.42266 * 4 2 1 6 6 C 1.53042 * 109.53559 * 298.63696 * 5 4 2 7 7 H 1.09005 * 109.52809 * 301.39198 * 6 5 4 8 8 N 1.46505 * 109.49735 * 181.31849 * 6 5 4 9 9 C 1.34769 * 120.00123 * 155.16393 * 8 6 5 10 10 O 1.21280 * 120.00052 * 359.97438 * 9 8 6 11 11 C 1.50704 * 120.00033 * 179.97438 * 9 8 6 12 12 C 1.50697 * 109.47042 * 179.97438 * 11 9 8 13 13 N 1.33239 * 125.53014 * 89.99766 * 12 11 9 14 14 C 1.30828 * 109.83124 * 179.97438 * 13 12 11 15 15 N 1.34429 * 108.07865 * 0.02562 * 14 13 12 16 16 H 0.96995 * 126.82599 * 179.97438 * 15 14 13 17 17 N 1.30719 * 125.52520 * 270.27623 * 12 11 9 18 18 C 1.53187 * 109.31525 * 61.36214 * 6 5 4 19 19 N 1.46920 * 108.77883 * 305.36554 * 18 6 5 20 20 C 1.36935 * 120.63216 * 233.58775 * 19 18 6 21 21 H 1.08006 * 120.00316 * 151.54970 * 20 19 18 22 22 C 1.38810 * 120.00182 * 331.54192 * 20 19 18 23 23 N 1.31620 * 120.00316 * 160.53708 * 22 20 19 24 24 Si 1.86801 * 119.99764 * 340.54472 * 22 20 19 25 25 H 1.48499 * 109.47543 * 94.83339 * 24 22 20 26 26 H 1.48507 * 109.46738 * 214.83431 * 24 22 20 27 27 H 1.48503 * 109.47009 * 334.82995 * 24 22 20 28 28 H 1.08998 * 109.46823 * 180.28405 * 1 2 3 29 29 H 1.08993 * 109.46819 * 300.28224 * 1 2 3 30 30 H 1.09003 * 109.47246 * 60.28578 * 1 2 3 31 31 H 1.08998 * 109.49724 * 294.37898 * 4 2 1 32 32 H 1.09005 * 109.49832 * 54.47182 * 4 2 1 33 33 H 1.08992 * 109.46103 * 178.61955 * 5 4 2 34 34 H 1.08995 * 109.45848 * 58.65520 * 5 4 2 35 35 H 0.97000 * 119.99890 * 335.15543 * 8 6 5 36 36 H 1.08995 * 109.47501 * 59.99525 * 11 9 8 37 37 H 1.09000 * 109.46539 * 299.99395 * 11 9 8 38 38 H 1.08007 * 125.96472 * 179.97438 * 14 13 12 39 39 H 1.09008 * 109.58778 * 65.15376 * 18 6 5 40 40 H 1.08997 * 109.59045 * 185.57386 * 18 6 5 41 41 H 0.97001 * 120.00357 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7309 1.2445 5 6 3.5675 -0.8494 1.1691 6 6 3.9569 -1.6656 -0.0655 7 1 3.4988 -2.6531 -0.0088 8 7 5.4143 -1.8052 -0.1197 9 6 5.9677 -2.8454 -0.7740 10 8 5.2593 -3.6662 -1.3175 11 6 7.4669 -2.9887 -0.8302 12 6 7.8243 -4.2250 -1.6142 13 7 8.0295 -4.2753 -2.9297 14 6 8.3217 -5.4995 -3.2869 15 7 8.3079 -6.2700 -2.1855 16 1 8.4866 -7.2222 -2.1398 17 7 7.9781 -5.4232 -1.1146 18 6 3.4650 -0.9454 -1.3249 19 7 2.0226 -0.6981 -1.1954 20 6 1.1538 -1.1101 -2.1703 21 1 0.1334 -1.3562 -1.9156 22 6 1.5843 -1.2113 -3.4861 23 7 0.9109 -1.9480 -4.3441 24 14 3.1196 -0.3021 -4.0389 25 1 4.2907 -1.2113 -3.9547 26 1 2.9467 0.1537 -5.4417 27 1 3.3418 0.8741 -3.1601 28 1 -0.3633 -1.0277 0.0051 29 1 -0.3633 0.5182 0.8874 30 1 -0.3634 0.5094 -0.8926 31 1 1.7660 -0.1694 2.1366 32 1 1.6030 -1.7269 1.2892 33 1 3.9378 -1.3473 2.0651 34 1 4.0061 0.1460 1.0995 35 1 5.9809 -1.1489 0.3152 36 1 7.8620 -3.0739 0.1820 37 1 7.8975 -2.1130 -1.3158 38 1 8.5357 -5.8331 -4.2916 39 1 3.9903 0.0038 -1.4317 40 1 3.6518 -1.5690 -2.1991 41 1 1.2120 -2.0191 -5.2635 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071973300.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:41 Heat of formation + Delta-G solvation = 42.476896 kcal Electronic energy + Delta-G solvation = -24123.601893 eV Core-core repulsion = 20653.728798 eV Total energy + Delta-G solvation = -3469.873095 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.10965 -41.01557 -39.41594 -36.10275 -34.66572 -34.37156 -32.86703 -32.58921 -32.24812 -29.96926 -27.75612 -26.54169 -24.52071 -23.83280 -22.78475 -21.92990 -21.28784 -20.72324 -19.32412 -18.53969 -18.23910 -17.63451 -16.84000 -16.50635 -16.35156 -16.18906 -15.74215 -15.30952 -15.17945 -14.86346 -14.71523 -14.38334 -14.33597 -13.76370 -13.42671 -13.24565 -13.11830 -12.96234 -12.69538 -12.52204 -12.47209 -12.07123 -11.75704 -11.66534 -11.42497 -11.32008 -11.24870 -11.12027 -10.99094 -10.76919 -10.62147 -10.14487 -8.86806 -8.17023 -5.47677 0.59585 1.28987 1.30484 1.40724 1.59835 1.68167 1.81339 2.32696 2.41311 3.06981 3.14173 3.34936 3.63394 3.80486 3.92186 4.05166 4.11026 4.16155 4.28452 4.40246 4.42041 4.54561 4.61287 4.68974 4.85320 4.88756 4.99063 5.01538 5.13076 5.18472 5.20231 5.28243 5.32025 5.47234 5.51440 5.66082 5.90613 6.17380 6.22923 6.57748 6.93354 7.06503 7.30531 7.65634 8.04072 9.02603 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.016706 B = 0.005108 C = 0.004275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.598637 B = 5480.363766 C = 6547.436600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.157 3.843 3 H 0.049 0.951 4 C -0.121 4.121 5 C -0.106 4.106 6 C 0.137 3.863 7 H 0.049 0.951 8 N -0.706 5.706 9 C 0.509 3.491 10 O -0.586 6.586 11 C -0.042 4.042 12 C 0.229 3.771 13 N -0.582 5.582 14 C 0.272 3.728 15 N -0.474 5.474 16 H 0.458 0.542 17 N -0.335 5.335 18 C 0.120 3.880 19 N -0.615 5.615 20 C -0.235 4.235 21 H 0.067 0.933 22 C -0.039 4.039 23 N -0.960 5.960 24 Si 0.942 3.058 25 H -0.302 1.302 26 H -0.311 1.311 27 H -0.248 1.248 28 H 0.035 0.965 29 H 0.085 0.915 30 H 0.038 0.962 31 H 0.104 0.896 32 H 0.045 0.955 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.422 0.578 36 H 0.156 0.844 37 H 0.146 0.854 38 H 0.271 0.729 39 H 0.038 0.962 40 H 0.029 0.971 41 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.185 -0.502 12.460 22.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.053 3.947 3 H 0.067 0.933 4 C -0.161 4.161 5 C -0.144 4.144 6 C 0.030 3.970 7 H 0.067 0.933 8 N -0.360 5.360 9 C 0.295 3.705 10 O -0.465 6.465 11 C -0.084 4.084 12 C -0.054 4.054 13 N -0.311 5.311 14 C -0.026 4.026 15 N -0.194 5.194 16 H 0.307 0.693 17 N -0.165 5.165 18 C -0.006 4.006 19 N -0.340 5.340 20 C -0.365 4.365 21 H 0.084 0.916 22 C -0.233 4.233 23 N -0.607 5.607 24 Si 0.772 3.228 25 H -0.230 1.230 26 H -0.240 1.240 27 H -0.171 1.171 28 H 0.054 0.946 29 H 0.104 0.896 30 H 0.057 0.943 31 H 0.122 0.878 32 H 0.064 0.936 33 H 0.110 0.890 34 H 0.108 0.892 35 H 0.261 0.739 36 H 0.173 0.827 37 H 0.163 0.837 38 H 0.286 0.714 39 H 0.056 0.944 40 H 0.047 0.953 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 17.542 -0.950 12.503 21.563 hybrid contribution 0.573 -0.685 -1.421 1.678 sum 18.115 -1.635 11.082 21.299 Atomic orbital electron populations 1.21767 0.95078 1.00801 1.01331 1.20900 0.94119 0.94179 0.85521 0.93328 1.21978 0.94922 1.00758 0.98397 1.21669 0.96699 1.00571 0.95413 1.21347 0.79634 0.99140 0.96854 0.93311 1.45800 1.07402 1.27367 1.55405 1.20985 0.91149 0.80933 0.77438 1.90779 1.65128 1.44224 1.46404 1.20044 0.91014 0.94076 1.03229 1.23751 0.97736 0.94119 0.89792 1.70350 1.24243 1.23287 1.13264 1.26968 0.93771 0.85570 0.96312 1.47991 1.53495 1.12947 1.04925 0.69296 1.77808 1.24687 1.01979 1.12020 1.21629 0.85075 0.96887 0.97030 1.44581 1.01747 1.66484 1.21188 1.18919 0.95025 1.35985 0.86570 0.91552 1.25910 1.00603 1.00309 0.96513 1.69951 1.43737 1.41954 1.05032 0.85954 0.80293 0.80196 0.76309 1.23047 1.23991 1.17128 0.94622 0.89624 0.94323 0.87781 0.93615 0.89013 0.89247 0.73947 0.82667 0.83660 0.71408 0.94386 0.95271 0.93435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.75 7.94 71.98 0.57 -4.18 16 2 C 0.16 5.75 3.50 44.97 0.16 5.90 16 3 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 4 C -0.12 -3.42 5.37 30.67 0.16 -3.26 16 5 C -0.11 -2.64 5.35 30.62 0.16 -2.47 16 6 C 0.14 4.89 2.60 45.07 0.12 5.00 16 7 H 0.05 2.16 7.58 -2.38 -0.02 2.15 16 8 N -0.71 -19.83 5.08 -442.16 -2.25 -22.07 16 9 C 0.51 17.29 7.79 87.66 0.68 17.97 16 10 O -0.59 -28.10 15.70 -3.03 -0.05 -28.14 16 11 C -0.04 -1.00 6.33 29.10 0.18 -0.81 16 12 C 0.23 6.94 6.63 138.63 0.92 7.86 16 13 N -0.58 -17.81 11.19 -191.80 -2.15 -19.96 16 14 C 0.27 5.60 13.13 180.36 2.37 7.97 16 15 N -0.47 -9.56 7.45 -60.49 -0.45 -10.01 16 16 H 0.46 5.16 8.96 -213.10 -1.91 3.25 16 17 N -0.33 -9.65 12.80 -51.33 -0.66 -10.30 16 18 C 0.12 5.46 3.76 86.36 0.32 5.79 16 19 N -0.61 -29.73 2.76 -675.23 -1.86 -31.60 16 20 C -0.24 -13.92 9.06 84.03 0.76 -13.16 16 21 H 0.07 4.18 6.37 -2.91 -0.02 4.16 16 22 C -0.04 -2.48 5.24 84.86 0.45 -2.04 16 23 N -0.96 -65.02 13.97 21.65 0.30 -64.72 16 24 Si 0.94 51.50 24.35 68.60 1.67 53.17 16 25 H -0.30 -17.16 6.72 99.48 0.67 -16.49 16 26 H -0.31 -17.04 7.11 99.48 0.71 -16.34 16 27 H -0.25 -12.33 6.44 99.48 0.64 -11.69 16 28 H 0.03 1.40 7.45 -2.39 -0.02 1.38 16 29 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.04 1.55 7.61 -2.39 -0.02 1.54 16 31 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 33 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.42 7.22 8.60 -92.71 -0.80 6.43 16 36 H 0.16 2.35 8.14 -2.39 -0.02 2.33 16 37 H 0.15 2.68 8.14 -2.39 -0.02 2.66 16 38 H 0.27 2.28 8.06 -2.91 -0.02 2.26 16 39 H 0.04 1.62 6.95 -2.38 -0.02 1.60 16 40 H 0.03 1.62 4.61 -2.39 -0.01 1.61 16 41 H 0.26 16.73 8.31 -92.71 -0.77 15.95 16 Total: -1.00 -96.94 329.91 -0.32 -97.25 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -1.74 Total: 11.81 kcal Atomic # 6 Polarization: 17.72 SS G_CDS: 6.86 Total: 24.58 kcal Atomic # 7 Polarization: -151.61 SS G_CDS: -7.06 Total: -158.66 kcal Atomic # 8 Polarization: -28.10 SS G_CDS: -0.05 Total: -28.14 kcal Atomic # 14 Polarization: 51.50 SS G_CDS: 1.67 Total: 53.17 kcal Total: -96.94 -0.32 -97.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071973300.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.730 kcal (2) G-P(sol) polarization free energy of solvation -96.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds