Wall clock time and date at job start Tue Mar 31 2020 03:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.58377 * 2 1 4 4 C 1.53188 * 109.58480 * 239.71508 * 2 1 3 5 5 C 1.53037 * 109.31344 * 185.57788 * 4 2 1 6 6 C 1.53042 * 109.53762 * 61.36852 * 5 4 2 7 7 H 1.08999 * 109.49755 * 178.65162 * 6 5 4 8 8 N 1.46497 * 109.49898 * 58.58715 * 6 5 4 9 9 C 1.34781 * 120.00328 * 155.00347 * 8 6 5 10 10 O 1.21282 * 119.99666 * 359.97438 * 9 8 6 11 11 C 1.50695 * 119.99858 * 179.97438 * 9 8 6 12 12 N 1.46504 * 109.46827 * 179.97438 * 11 9 8 13 13 C 1.34425 * 126.82697 * 125.00038 * 12 11 9 14 14 N 1.30831 * 108.08042 * 180.02562 * 13 12 11 15 15 C 1.33234 * 109.82894 * 359.97438 * 14 13 12 16 16 N 1.30717 * 108.94949 * 0.02562 * 15 14 13 17 17 C 1.53191 * 109.30998 * 298.63683 * 6 5 4 18 18 N 1.46923 * 109.58310 * 120.42897 * 2 1 3 19 19 C 1.36933 * 120.63537 * 353.37347 * 18 2 1 20 20 H 1.08003 * 120.00073 * 29.01788 * 19 18 2 21 21 C 1.38814 * 120.00357 * 209.02406 * 19 18 2 22 22 N 1.31623 * 119.99984 * 15.02267 * 21 19 18 23 23 Si 1.86796 * 120.00065 * 195.03069 * 21 19 18 24 24 H 1.48501 * 109.47518 * 59.99813 * 23 21 19 25 25 H 1.48510 * 109.47029 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47081 * 299.99319 * 23 21 19 27 27 H 1.08998 * 109.47110 * 180.28365 * 1 2 3 28 28 H 1.09002 * 109.47017 * 300.28285 * 1 2 3 29 29 H 1.09005 * 109.46913 * 60.28203 * 1 2 3 30 30 H 1.09002 * 109.49685 * 65.62981 * 4 2 1 31 31 H 1.09004 * 109.52660 * 305.54633 * 4 2 1 32 32 H 1.09003 * 109.46367 * 301.34890 * 5 4 2 33 33 H 1.08999 * 109.45275 * 181.37732 * 5 4 2 34 34 H 0.97005 * 119.99695 * 334.99794 * 8 6 5 35 35 H 1.09000 * 109.47549 * 60.00214 * 11 9 8 36 36 H 1.08996 * 109.47315 * 299.99431 * 11 9 8 37 37 H 1.08006 * 125.96110 * 0.25649 * 13 12 11 38 38 H 1.07996 * 125.52896 * 179.97438 * 15 14 13 39 39 H 1.09002 * 109.58828 * 174.42584 * 17 6 5 40 40 H 1.09008 * 109.58827 * 294.84704 * 17 6 5 41 41 H 0.96997 * 120.00023 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7278 -1.2463 5 6 3.5675 -0.8466 -1.1712 6 6 3.9569 -1.6659 0.0613 7 1 5.0411 -1.7703 0.1011 8 7 3.3405 -2.9925 -0.0186 9 6 3.8970 -4.0344 0.6305 10 8 4.9083 -3.8738 1.2803 11 6 3.2625 -5.3989 0.5486 12 7 4.0516 -6.3521 1.3330 13 6 3.6062 -7.1437 2.3240 14 7 4.6171 -7.8449 2.7689 15 6 5.7192 -7.5304 2.0895 16 7 5.4237 -6.6202 1.1991 17 6 3.4650 -0.9487 1.3225 18 7 2.0225 -0.7011 1.1936 19 6 1.1537 -1.1155 2.1675 20 1 0.1359 -1.3694 1.9108 21 6 1.5812 -1.2091 3.4849 22 7 2.7045 -0.6315 3.8549 23 14 0.5623 -2.1550 4.7324 24 1 0.4325 -3.5685 4.2961 25 1 1.2314 -2.1059 6.0573 26 1 -0.7868 -1.5430 4.8358 27 1 -0.3633 -1.0276 0.0051 28 1 -0.3633 0.5182 0.8875 29 1 -0.3633 0.5095 -0.8926 30 1 1.7660 -0.1641 -2.1370 31 1 1.6030 -1.7237 -1.2940 32 1 4.0062 0.1487 -1.0991 33 1 3.9376 -1.3424 -2.0686 34 1 2.5318 -3.1210 -0.5386 35 1 3.2309 -5.7232 -0.4915 36 1 2.2486 -5.3525 0.9458 37 1 2.5902 -7.1949 2.6868 38 1 6.6982 -7.9575 2.2491 39 1 3.6518 -1.5746 2.1951 40 1 3.9903 0.0002 1.4317 41 1 3.0034 -0.6973 4.7754 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072052185.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:52 Heat of formation + Delta-G solvation = 84.552825 kcal Electronic energy + Delta-G solvation = -24659.254292 eV Core-core repulsion = 21191.205746 eV Total energy + Delta-G solvation = -3468.048546 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.90811 -39.53873 -37.66122 -34.23780 -33.81073 -32.80666 -31.08209 -30.87016 -29.95401 -27.91663 -26.12817 -24.98979 -22.43313 -22.21092 -21.83749 -20.75917 -20.33363 -18.82003 -17.31476 -17.21705 -16.29990 -15.69610 -15.37229 -15.09077 -14.64000 -14.38924 -14.08846 -13.98896 -13.81573 -13.42248 -13.18639 -13.00446 -12.59971 -12.47464 -11.98745 -11.65597 -11.29337 -11.22614 -11.01383 -10.95179 -10.76497 -10.45344 -10.40060 -10.05050 -10.00760 -9.90420 -9.62655 -9.58410 -9.51880 -9.21092 -8.50908 -8.46157 -6.66272 -5.80169 -3.25073 1.75354 2.32574 2.98177 3.11993 3.31544 3.37027 3.41773 3.53496 4.42687 4.43800 4.61097 4.90585 4.96177 5.03328 5.24874 5.29841 5.37991 5.41523 5.44691 5.53677 5.94723 6.04807 6.09288 6.26866 6.28717 6.30582 6.38242 6.45438 6.53968 6.56874 6.61888 6.80508 6.85397 6.98702 7.05470 7.32186 7.63818 7.76882 7.95022 8.20088 8.43308 8.64213 9.17755 9.82380 10.38769 11.27492 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.013832 B = 0.006205 C = 0.004854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.831560 B = 4511.507711 C = 5767.160934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.164 3.836 3 H 0.024 0.976 4 C -0.129 4.129 5 C -0.118 4.118 6 C 0.121 3.879 7 H 0.075 0.925 8 N -0.697 5.697 9 C 0.501 3.499 10 O -0.517 6.517 11 C 0.109 3.891 12 N -0.362 5.362 13 C 0.255 3.745 14 N -0.549 5.549 15 C 0.186 3.814 16 N -0.289 5.289 17 C 0.162 3.838 18 N -0.582 5.582 19 C -0.254 4.254 20 H 0.068 0.932 21 C 0.006 3.994 22 N -0.898 5.898 23 Si 0.898 3.102 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.283 1.283 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.037 0.963 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.051 0.949 34 H 0.395 0.605 35 H 0.113 0.887 36 H 0.130 0.870 37 H 0.218 0.782 38 H 0.214 0.786 39 H 0.097 0.903 40 H 0.025 0.975 41 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.685 -7.475 -10.707 13.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.058 3.942 3 H 0.042 0.958 4 C -0.169 4.169 5 C -0.157 4.157 6 C 0.015 3.985 7 H 0.093 0.907 8 N -0.349 5.349 9 C 0.283 3.717 10 O -0.392 6.392 11 C -0.017 4.017 12 N -0.153 5.153 13 C -0.041 4.041 14 N -0.276 5.276 15 C -0.117 4.117 16 N -0.116 5.116 17 C 0.035 3.965 18 N -0.306 5.306 19 C -0.383 4.383 20 H 0.086 0.914 21 C -0.194 4.194 22 N -0.541 5.541 23 Si 0.728 3.272 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.210 1.210 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.056 0.944 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.070 0.930 34 H 0.230 0.770 35 H 0.131 0.869 36 H 0.148 0.852 37 H 0.234 0.766 38 H 0.230 0.770 39 H 0.115 0.885 40 H 0.043 0.957 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.406 -7.189 -10.326 12.589 hybrid contribution -1.176 -0.309 0.591 1.352 sum -1.583 -7.498 -9.735 12.389 Atomic orbital electron populations 1.21795 0.96106 1.01202 1.00172 1.20465 0.92881 0.93658 0.87216 0.95818 1.22060 0.95098 1.00619 0.99105 1.21692 0.97030 1.00182 0.96752 1.21786 0.96935 0.81430 0.98301 0.90681 1.45740 1.29357 1.08492 1.51293 1.20114 0.85368 0.85564 0.80645 1.90781 1.24321 1.84277 1.39827 1.21639 0.94835 0.87445 0.97818 1.49946 1.06937 1.30539 1.27914 1.26049 1.00679 0.89353 0.88063 1.70498 0.98756 1.28974 1.29404 1.25948 0.99006 0.94628 0.92091 1.78144 0.90632 1.18130 1.24729 1.21185 0.83744 0.97124 0.94435 1.44043 1.02667 1.64710 1.19162 1.19035 0.94634 1.38460 0.86186 0.91412 1.25087 0.97659 0.99643 0.96991 1.69966 1.23081 1.44071 1.17026 0.86460 0.79628 0.79994 0.81125 1.21273 1.21684 1.20951 0.92957 0.92095 0.94426 0.92852 0.92694 0.91086 0.93000 0.77018 0.86916 0.85212 0.76605 0.76969 0.88530 0.95736 0.93547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 7.94 37.16 0.30 -1.99 16 2 C 0.16 3.05 3.50 -67.60 -0.24 2.81 16 3 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 4 C -0.13 -1.89 5.20 -26.61 -0.14 -2.03 16 5 C -0.12 -1.75 5.59 -26.69 -0.15 -1.90 16 6 C 0.12 2.19 2.81 -67.81 -0.19 2.00 16 7 H 0.08 1.45 7.58 -51.93 -0.39 1.05 16 8 N -0.70 -11.16 4.92 -53.69 -0.26 -11.42 16 9 C 0.50 8.66 7.83 -10.99 -0.09 8.58 16 10 O -0.52 -11.58 15.40 5.56 0.09 -11.49 16 11 C 0.11 1.36 7.03 -5.19 -0.04 1.33 16 12 N -0.36 -5.44 3.41 -63.81 -0.22 -5.66 16 13 C 0.26 3.50 12.63 -90.66 -1.14 2.35 16 14 N -0.55 -8.47 11.19 -15.83 -0.18 -8.64 16 15 C 0.19 2.79 13.03 -91.82 -1.20 1.60 16 16 N -0.29 -4.91 11.82 29.29 0.35 -4.57 16 17 C 0.16 3.72 4.89 -3.71 -0.02 3.70 16 18 N -0.58 -13.10 2.91 -164.77 -0.48 -13.58 16 19 C -0.25 -6.34 8.61 -15.06 -0.13 -6.46 16 20 H 0.07 1.64 6.20 -52.48 -0.33 1.31 16 21 C 0.01 0.15 4.96 -17.43 -0.09 0.06 16 22 N -0.90 -25.87 11.14 55.49 0.62 -25.26 16 23 Si 0.90 21.18 29.58 -169.99 -5.03 16.15 16 24 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 27 H 0.05 0.87 7.40 -51.93 -0.38 0.49 16 28 H 0.06 1.15 7.66 -51.93 -0.40 0.75 16 29 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.76 6.40 -51.93 -0.33 0.43 16 32 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.40 5.28 6.77 -40.82 -0.28 5.00 16 35 H 0.11 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.13 1.25 8.09 -51.93 -0.42 0.83 16 37 H 0.22 2.01 8.06 -52.48 -0.42 1.58 16 38 H 0.21 2.35 8.06 -52.49 -0.42 1.92 16 39 H 0.10 2.65 6.06 -51.93 -0.31 2.34 16 40 H 0.02 0.61 8.14 -51.92 -0.42 0.19 16 41 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 333.28 15.07 5.02 5.02 Total: -1.00 -34.69 333.28 -9.00 -43.69 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -5.78 Total: 5.72 kcal Atomic # 6 Polarization: 13.15 SS G_CDS: -3.12 Total: 10.03 kcal Atomic # 7 Polarization: -68.95 SS G_CDS: -0.17 Total: -69.13 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.09 Total: -11.49 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.15 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -34.69 -9.00 -43.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072052185.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.240 kcal (2) G-P(sol) polarization free energy of solvation -34.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds