Wall clock time and date at job start Tue Mar 31 2020 03:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.58377 * 2 1 4 4 C 1.53188 * 109.58480 * 239.71508 * 2 1 3 5 5 C 1.53037 * 109.31344 * 185.57788 * 4 2 1 6 6 C 1.53042 * 109.53762 * 61.36852 * 5 4 2 7 7 H 1.08999 * 109.49755 * 178.65162 * 6 5 4 8 8 N 1.46497 * 109.49898 * 58.58715 * 6 5 4 9 9 C 1.34781 * 120.00328 * 155.00347 * 8 6 5 10 10 O 1.21282 * 119.99666 * 359.97438 * 9 8 6 11 11 C 1.50695 * 119.99858 * 179.97438 * 9 8 6 12 12 N 1.46504 * 109.46827 * 179.97438 * 11 9 8 13 13 C 1.34425 * 126.82697 * 125.00038 * 12 11 9 14 14 N 1.30831 * 108.08042 * 180.02562 * 13 12 11 15 15 C 1.33234 * 109.82894 * 359.97438 * 14 13 12 16 16 N 1.30717 * 108.94949 * 0.02562 * 15 14 13 17 17 C 1.53191 * 109.30998 * 298.63683 * 6 5 4 18 18 N 1.46923 * 109.58310 * 120.42897 * 2 1 3 19 19 C 1.36933 * 120.63537 * 353.37347 * 18 2 1 20 20 H 1.08003 * 120.00073 * 29.01788 * 19 18 2 21 21 C 1.38814 * 120.00357 * 209.02406 * 19 18 2 22 22 N 1.31623 * 119.99984 * 15.02267 * 21 19 18 23 23 Si 1.86796 * 120.00065 * 195.03069 * 21 19 18 24 24 H 1.48501 * 109.47518 * 59.99813 * 23 21 19 25 25 H 1.48510 * 109.47029 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47081 * 299.99319 * 23 21 19 27 27 H 1.08998 * 109.47110 * 180.28365 * 1 2 3 28 28 H 1.09002 * 109.47017 * 300.28285 * 1 2 3 29 29 H 1.09005 * 109.46913 * 60.28203 * 1 2 3 30 30 H 1.09002 * 109.49685 * 65.62981 * 4 2 1 31 31 H 1.09004 * 109.52660 * 305.54633 * 4 2 1 32 32 H 1.09003 * 109.46367 * 301.34890 * 5 4 2 33 33 H 1.08999 * 109.45275 * 181.37732 * 5 4 2 34 34 H 0.97005 * 119.99695 * 334.99794 * 8 6 5 35 35 H 1.09000 * 109.47549 * 60.00214 * 11 9 8 36 36 H 1.08996 * 109.47315 * 299.99431 * 11 9 8 37 37 H 1.08006 * 125.96110 * 0.25649 * 13 12 11 38 38 H 1.07996 * 125.52896 * 179.97438 * 15 14 13 39 39 H 1.09002 * 109.58828 * 174.42584 * 17 6 5 40 40 H 1.09008 * 109.58827 * 294.84704 * 17 6 5 41 41 H 0.96997 * 120.00023 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7278 -1.2463 5 6 3.5675 -0.8466 -1.1712 6 6 3.9569 -1.6659 0.0613 7 1 5.0411 -1.7703 0.1011 8 7 3.3405 -2.9925 -0.0186 9 6 3.8970 -4.0344 0.6305 10 8 4.9083 -3.8738 1.2803 11 6 3.2625 -5.3989 0.5486 12 7 4.0516 -6.3521 1.3330 13 6 3.6062 -7.1437 2.3240 14 7 4.6171 -7.8449 2.7689 15 6 5.7192 -7.5304 2.0895 16 7 5.4237 -6.6202 1.1991 17 6 3.4650 -0.9487 1.3225 18 7 2.0225 -0.7011 1.1936 19 6 1.1537 -1.1155 2.1675 20 1 0.1359 -1.3694 1.9108 21 6 1.5812 -1.2091 3.4849 22 7 2.7045 -0.6315 3.8549 23 14 0.5623 -2.1550 4.7324 24 1 0.4325 -3.5685 4.2961 25 1 1.2314 -2.1059 6.0573 26 1 -0.7868 -1.5430 4.8358 27 1 -0.3633 -1.0276 0.0051 28 1 -0.3633 0.5182 0.8875 29 1 -0.3633 0.5095 -0.8926 30 1 1.7660 -0.1641 -2.1370 31 1 1.6030 -1.7237 -1.2940 32 1 4.0062 0.1487 -1.0991 33 1 3.9376 -1.3424 -2.0686 34 1 2.5318 -3.1210 -0.5386 35 1 3.2309 -5.7232 -0.4915 36 1 2.2486 -5.3525 0.9458 37 1 2.5902 -7.1949 2.6868 38 1 6.6982 -7.9575 2.2491 39 1 3.6518 -1.5746 2.1951 40 1 3.9903 0.0002 1.4317 41 1 3.0034 -0.6973 4.7754 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072052185.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:51 Heat of formation + Delta-G solvation = 61.375726 kcal Electronic energy + Delta-G solvation = -24660.259327 eV Core-core repulsion = 21191.205746 eV Total energy + Delta-G solvation = -3469.053580 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.99011 -40.95656 -39.16378 -35.79557 -34.95834 -34.49932 -32.34775 -32.12257 -31.72196 -29.05099 -27.72263 -26.64271 -23.92726 -23.53950 -22.89759 -22.15610 -21.69736 -20.37416 -18.56355 -18.42515 -17.98535 -17.12267 -16.77899 -16.43001 -15.97519 -15.79355 -15.61317 -15.34811 -15.02849 -14.89230 -14.55832 -14.44794 -14.00736 -13.76887 -13.52898 -12.96234 -12.87247 -12.74488 -12.58145 -12.52666 -12.40100 -12.11813 -12.06446 -11.55820 -11.30747 -11.19600 -11.03218 -11.02395 -10.75721 -10.53633 -10.44327 -9.94250 -8.56902 -7.80104 -5.26083 0.67995 1.33519 1.44287 1.45287 1.53214 1.67979 2.02632 2.30488 2.52678 3.35853 3.51332 3.59196 3.64243 3.80576 4.03080 4.09859 4.11087 4.13176 4.20311 4.41475 4.50854 4.66856 4.75466 4.84326 4.98108 5.05899 5.10086 5.14493 5.24007 5.29717 5.34212 5.49642 5.60017 5.63627 5.69852 5.75008 5.75390 5.85518 6.44959 6.66937 7.11512 7.19678 7.37394 7.94611 8.46115 9.24917 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.013832 B = 0.006205 C = 0.004854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.831560 B = 4511.507711 C = 5767.160934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.152 3.848 3 H 0.006 0.994 4 C -0.117 4.117 5 C -0.110 4.110 6 C 0.133 3.867 7 H 0.055 0.945 8 N -0.685 5.685 9 C 0.491 3.509 10 O -0.578 6.578 11 C 0.113 3.887 12 N -0.372 5.372 13 C 0.257 3.743 14 N -0.575 5.575 15 C 0.182 3.818 16 N -0.332 5.332 17 C 0.173 3.827 18 N -0.592 5.592 19 C -0.233 4.233 20 H 0.084 0.916 21 C -0.060 4.060 22 N -0.942 5.942 23 Si 0.952 3.048 24 H -0.267 1.267 25 H -0.314 1.314 26 H -0.273 1.273 27 H 0.059 0.941 28 H 0.032 0.968 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.086 0.914 34 H 0.412 0.588 35 H 0.153 0.847 36 H 0.166 0.834 37 H 0.258 0.742 38 H 0.239 0.761 39 H 0.047 0.953 40 H -0.013 1.013 41 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.363 -8.921 -13.628 16.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.047 3.953 3 H 0.024 0.976 4 C -0.156 4.156 5 C -0.148 4.148 6 C 0.026 3.974 7 H 0.073 0.927 8 N -0.337 5.337 9 C 0.276 3.724 10 O -0.456 6.456 11 C -0.012 4.012 12 N -0.163 5.163 13 C -0.039 4.039 14 N -0.303 5.303 15 C -0.121 4.121 16 N -0.159 5.159 17 C 0.046 3.954 18 N -0.316 5.316 19 C -0.364 4.364 20 H 0.101 0.899 21 C -0.254 4.254 22 N -0.589 5.589 23 Si 0.781 3.219 24 H -0.192 1.192 25 H -0.241 1.241 26 H -0.199 1.199 27 H 0.078 0.922 28 H 0.051 0.949 29 H 0.092 0.908 30 H 0.107 0.893 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.105 0.895 34 H 0.250 0.750 35 H 0.171 0.829 36 H 0.183 0.817 37 H 0.274 0.726 38 H 0.255 0.745 39 H 0.066 0.934 40 H 0.005 0.995 41 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -3.158 -8.644 -13.329 16.197 hybrid contribution -0.362 0.239 1.467 1.530 sum -3.520 -8.404 -11.862 14.958 Atomic orbital electron populations 1.21725 0.94428 1.01730 1.00652 1.20784 0.94334 0.92966 0.87221 0.97603 1.21944 0.94277 1.01486 0.97844 1.21658 0.97650 0.99574 0.95950 1.21378 0.95858 0.82655 0.97503 0.92664 1.45587 1.29737 1.07372 1.51012 1.21057 0.84660 0.87460 0.79188 1.90764 1.27127 1.85480 1.42273 1.21923 0.95155 0.83780 1.00297 1.50101 1.06518 1.31092 1.28597 1.26893 1.01913 0.88123 0.86930 1.70511 0.99391 1.30192 1.30198 1.26530 1.00099 0.94001 0.91429 1.78065 0.92308 1.19290 1.26262 1.20816 0.84346 0.94969 0.95269 1.44264 1.02012 1.65331 1.20021 1.19446 0.95142 1.35545 0.86254 0.89860 1.25822 0.98816 1.01589 0.99167 1.70186 1.25493 1.47004 1.16213 0.85562 0.78291 0.79918 0.78095 1.19237 1.24128 1.19922 0.92237 0.94925 0.90778 0.89341 0.90889 0.91569 0.89536 0.74953 0.82938 0.81654 0.72616 0.74521 0.93425 0.99510 0.95188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.90 7.94 71.98 0.57 -3.33 16 2 C 0.15 5.31 3.50 44.98 0.16 5.47 16 3 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 4 C -0.12 -2.89 5.20 30.67 0.16 -2.73 16 5 C -0.11 -2.95 5.59 30.62 0.17 -2.78 16 6 C 0.13 4.76 2.81 45.07 0.13 4.89 16 7 H 0.06 2.21 7.58 -2.39 -0.02 2.19 16 8 N -0.68 -20.56 4.92 -442.17 -2.17 -22.73 16 9 C 0.49 16.47 7.83 87.65 0.69 17.16 16 10 O -0.58 -26.58 15.40 -3.03 -0.05 -26.63 16 11 C 0.11 2.47 7.03 85.63 0.60 3.08 16 12 N -0.37 -10.50 3.41 -355.81 -1.21 -11.71 16 13 C 0.26 6.50 12.63 180.36 2.28 8.78 16 14 N -0.58 -17.11 11.19 -204.01 -2.28 -19.39 16 15 C 0.18 5.39 13.03 180.77 2.36 7.75 16 16 N -0.33 -11.14 11.82 -61.25 -0.72 -11.87 16 17 C 0.17 8.28 4.89 86.36 0.42 8.70 16 18 N -0.59 -26.54 2.91 -675.21 -1.96 -28.50 16 19 C -0.23 -11.55 8.61 84.03 0.72 -10.83 16 20 H 0.08 3.83 6.20 -2.91 -0.02 3.82 16 21 C -0.06 -3.25 4.96 84.86 0.42 -2.83 16 22 N -0.94 -57.29 11.14 21.65 0.24 -57.05 16 23 Si 0.95 43.88 29.58 68.60 2.03 45.91 16 24 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 25 H -0.31 -15.53 7.11 99.48 0.71 -14.82 16 26 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 27 H 0.06 1.73 7.40 -2.39 -0.02 1.71 16 28 H 0.03 1.16 7.66 -2.39 -0.02 1.14 16 29 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 30 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.07 1.59 6.40 -2.38 -0.02 1.57 16 32 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.41 9.34 6.77 -92.70 -0.63 8.71 16 35 H 0.15 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.17 2.40 8.09 -2.39 -0.02 2.38 16 37 H 0.26 3.82 8.06 -2.91 -0.02 3.80 16 38 H 0.24 5.17 8.06 -2.91 -0.02 5.14 16 39 H 0.05 2.77 6.06 -2.39 -0.01 2.75 16 40 H -0.01 -0.70 8.14 -2.38 -0.02 -0.72 16 41 H 0.24 14.65 8.31 -92.71 -0.77 13.88 16 Total: -1.00 -82.62 333.28 2.96 -79.66 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: 0.42 Total: 18.99 kcal Atomic # 6 Polarization: 24.67 SS G_CDS: 8.67 Total: 33.34 kcal Atomic # 7 Polarization: -143.15 SS G_CDS: -8.11 Total: -151.26 kcal Atomic # 8 Polarization: -26.58 SS G_CDS: -0.05 Total: -26.63 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -82.62 2.96 -79.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072052185.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.031 kcal (2) G-P(sol) polarization free energy of solvation -82.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds