Wall clock time and date at job start Tue Mar 31 2020 03:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.58265 * 2 1 4 4 C 1.53188 * 109.58740 * 120.28003 * 2 1 3 5 5 C 1.53043 * 109.31339 * 174.42701 * 4 2 1 6 6 C 1.53039 * 109.53670 * 298.63395 * 5 4 2 7 7 H 1.09004 * 109.49476 * 301.41467 * 6 5 4 8 8 N 1.46493 * 109.49706 * 181.31713 * 6 5 4 9 9 C 1.34782 * 119.99838 * 155.00165 * 8 6 5 10 10 O 1.21280 * 120.00136 * 359.97438 * 9 8 6 11 11 C 1.50700 * 119.99883 * 179.97438 * 9 8 6 12 12 N 1.46500 * 109.47280 * 179.97438 * 11 9 8 13 13 C 1.34430 * 126.82250 * 124.70718 * 12 11 9 14 14 N 1.30837 * 108.07457 * 179.89827 * 13 12 11 15 15 C 1.33248 * 109.82764 * 0.37638 * 14 13 12 16 16 N 1.30711 * 108.94613 * 359.76648 * 15 14 13 17 17 C 1.53196 * 109.31105 * 61.36524 * 6 5 4 18 18 N 1.46924 * 109.58607 * 239.57130 * 2 1 3 19 19 C 1.36929 * 120.63449 * 6.60424 * 18 2 1 20 20 H 1.07998 * 120.00095 * 331.55381 * 19 18 2 21 21 C 1.38817 * 120.00464 * 151.55897 * 19 18 2 22 22 N 1.31615 * 120.00284 * 160.52296 * 21 19 18 23 23 Si 1.86795 * 119.99586 * 340.52334 * 21 19 18 24 24 H 1.48497 * 109.47285 * 94.85835 * 23 21 19 25 25 H 1.48506 * 109.47021 * 214.85680 * 23 21 19 26 26 H 1.48504 * 109.47386 * 334.85725 * 23 21 19 27 27 H 1.08997 * 109.47758 * 299.71731 * 1 2 3 28 28 H 1.09002 * 109.47275 * 59.72427 * 1 2 3 29 29 H 1.09001 * 109.46713 * 179.72014 * 1 2 3 30 30 H 1.09000 * 109.49722 * 294.37641 * 4 2 1 31 31 H 1.08991 * 109.49805 * 54.46928 * 4 2 1 32 32 H 1.09004 * 109.46022 * 58.65138 * 5 4 2 33 33 H 1.08997 * 109.45788 * 178.61138 * 5 4 2 34 34 H 0.96994 * 120.00446 * 334.99693 * 8 6 5 35 35 H 1.09009 * 109.47214 * 299.99527 * 11 9 8 36 36 H 1.08996 * 109.47418 * 59.99504 * 11 9 8 37 37 H 1.07998 * 125.96267 * 0.03975 * 13 12 11 38 38 H 1.08002 * 125.52262 * 179.80122 * 15 14 13 39 39 H 1.08996 * 109.59032 * 65.15265 * 17 6 5 40 40 H 1.09004 * 109.58376 * 185.57776 * 17 6 5 41 41 H 0.96997 * 120.00346 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0435 -0.7277 1.2463 5 6 3.5675 -0.8463 1.1713 6 6 3.9570 -1.6656 -0.0613 7 1 3.4984 -2.6527 -0.0017 8 7 5.4143 -1.8052 -0.1151 9 6 5.9678 -2.8489 -0.7639 10 8 5.2594 -3.6727 -1.3028 11 6 7.4669 -2.9922 -0.8197 12 7 7.8144 -4.1981 -1.5755 13 6 8.6180 -4.2715 -2.6507 14 7 8.6743 -5.5222 -3.0308 15 6 7.9166 -6.2720 -2.2314 16 7 7.3693 -5.5063 -1.3245 17 6 3.4651 -0.9485 -1.3225 18 7 2.0225 -0.7011 -1.1936 19 6 1.1538 -1.1159 -2.1673 20 1 0.1335 -1.3612 -1.9119 21 6 1.5843 -1.2211 -3.4828 22 7 0.9111 -1.9605 -4.3385 23 14 3.1194 -0.3134 -4.0384 24 1 4.2906 -1.2222 -3.9519 25 1 2.9463 0.1386 -5.4424 26 1 3.3417 0.8653 -3.1628 27 1 -0.3634 0.5094 0.8924 28 1 -0.3634 0.5181 -0.8875 29 1 -0.3633 -1.0277 -0.0050 30 1 1.7660 -0.1640 2.1370 31 1 1.6030 -1.7235 1.2936 32 1 4.0061 0.1490 1.0991 33 1 3.9378 -1.3419 2.0687 34 1 5.9809 -1.1466 0.3162 35 1 7.8974 -2.1190 -1.3102 36 1 7.8623 -3.0719 0.1928 37 1 9.1299 -3.4430 -3.1176 38 1 7.7778 -7.3396 -2.3184 39 1 3.9903 0.0004 -1.4317 40 1 3.6519 -1.5744 -2.1951 41 1 1.2121 -2.0344 -5.2576 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072052186.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:54 Heat of formation + Delta-G solvation = 89.446282 kcal Electronic energy + Delta-G solvation = -24212.485090 eV Core-core repulsion = 20744.648741 eV Total energy + Delta-G solvation = -3467.836350 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.07755 -39.77988 -37.97538 -34.73327 -34.05426 -32.87213 -31.24027 -31.03749 -30.71999 -28.24071 -26.09301 -24.86531 -22.92190 -22.35892 -22.01031 -20.90244 -20.42178 -19.36747 -17.54108 -17.36310 -16.61074 -15.95629 -15.70311 -15.31287 -14.82464 -14.63812 -14.61528 -14.12796 -13.85722 -13.60455 -13.47839 -13.21175 -12.82660 -12.45166 -12.20287 -11.87800 -11.75413 -11.49954 -11.31824 -10.84554 -10.77775 -10.41720 -10.32257 -10.25749 -10.06712 -10.02334 -9.77427 -9.73112 -9.53714 -9.36524 -8.94852 -8.54972 -6.95502 -5.92188 -3.29954 1.57558 2.12303 2.62394 2.97587 3.14553 3.33940 3.44418 3.48193 4.24928 4.30523 4.53412 4.56749 4.70407 4.81766 4.93606 5.11140 5.17405 5.20857 5.40099 5.46618 5.68885 5.86553 5.94277 6.06020 6.14715 6.18373 6.21674 6.30500 6.40856 6.42282 6.47610 6.51960 6.57289 6.66659 6.76801 6.96306 7.06031 7.53768 7.97709 8.04436 8.28614 8.37443 8.94685 9.74461 10.09553 11.23374 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.016730 B = 0.005132 C = 0.004341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.201518 B = 5454.873449 C = 6448.315559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.169 3.831 3 H 0.030 0.970 4 C -0.128 4.128 5 C -0.116 4.116 6 C 0.127 3.873 7 H 0.092 0.908 8 N -0.723 5.723 9 C 0.491 3.509 10 O -0.496 6.496 11 C 0.111 3.889 12 N -0.369 5.369 13 C 0.253 3.747 14 N -0.546 5.546 15 C 0.191 3.809 16 N -0.287 5.287 17 C 0.122 3.878 18 N -0.597 5.597 19 C -0.262 4.262 20 H 0.093 0.907 21 C 0.028 3.972 22 N -0.905 5.905 23 Si 0.880 3.120 24 H -0.291 1.291 25 H -0.304 1.304 26 H -0.271 1.271 27 H 0.040 0.960 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.395 0.605 35 H 0.128 0.872 36 H 0.117 0.883 37 H 0.218 0.782 38 H 0.216 0.784 39 H 0.024 0.976 40 H 0.076 0.924 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.927 2.694 11.552 19.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.063 3.937 3 H 0.048 0.952 4 C -0.168 4.168 5 C -0.154 4.154 6 C 0.021 3.979 7 H 0.110 0.890 8 N -0.376 5.376 9 C 0.273 3.727 10 O -0.368 6.368 11 C -0.016 4.016 12 N -0.160 5.160 13 C -0.043 4.043 14 N -0.273 5.273 15 C -0.112 4.112 16 N -0.114 5.114 17 C -0.005 4.005 18 N -0.321 5.321 19 C -0.390 4.390 20 H 0.111 0.889 21 C -0.172 4.172 22 N -0.547 5.547 23 Si 0.711 3.289 24 H -0.219 1.219 25 H -0.232 1.232 26 H -0.196 1.196 27 H 0.059 0.941 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.228 0.772 35 H 0.146 0.854 36 H 0.135 0.865 37 H 0.234 0.766 38 H 0.233 0.767 39 H 0.042 0.958 40 H 0.094 0.906 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 14.012 1.688 11.296 18.077 hybrid contribution 1.277 1.088 -0.353 1.715 sum 15.289 2.777 10.942 19.005 Atomic orbital electron populations 1.21816 0.95176 1.02074 1.00436 1.20503 0.93790 0.93292 0.86092 0.95236 1.22057 0.94006 1.01819 0.98903 1.21680 0.97693 0.99503 0.96499 1.21819 0.77498 1.01364 0.97177 0.89012 1.46047 1.08741 1.26597 1.56232 1.20383 0.89673 0.82448 0.80148 1.90883 1.62342 1.40728 1.42881 1.21605 0.95541 0.85251 0.99174 1.49972 1.35388 1.06746 1.23916 1.26052 0.93595 0.97230 0.87464 1.70514 1.25812 1.01494 1.29440 1.26012 0.93492 1.01243 0.90451 1.78191 1.20838 0.87427 1.24909 1.21675 0.85703 0.96789 0.96312 1.44361 1.01559 1.65283 1.20925 1.18908 0.95391 1.38967 0.85738 0.88932 1.25294 0.97343 0.98599 0.95931 1.69808 1.41099 1.38849 1.04986 0.86955 0.83932 0.80941 0.77069 1.21920 1.23189 1.19585 0.94056 0.91719 0.92307 0.92108 0.91565 0.92081 0.92379 0.77169 0.85368 0.86469 0.76550 0.76733 0.95815 0.90552 0.92782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 7.94 37.16 0.30 -2.18 16 2 C 0.17 3.18 3.50 -67.60 -0.24 2.95 16 3 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 4 C -0.13 -1.96 5.37 -26.61 -0.14 -2.11 16 5 C -0.12 -1.60 5.35 -26.69 -0.14 -1.74 16 6 C 0.13 2.20 2.60 -67.81 -0.18 2.02 16 7 H 0.09 1.91 7.58 -51.93 -0.39 1.52 16 8 N -0.72 -9.65 5.08 -53.69 -0.27 -9.92 16 9 C 0.49 7.49 7.83 -10.98 -0.09 7.40 16 10 O -0.50 -10.79 15.40 5.56 0.09 -10.71 16 11 C 0.11 1.08 7.03 -5.19 -0.04 1.04 16 12 N -0.37 -4.86 3.41 -63.81 -0.22 -5.08 16 13 C 0.25 2.96 12.63 -90.65 -1.14 1.82 16 14 N -0.55 -7.70 11.19 -15.83 -0.18 -7.87 16 15 C 0.19 2.70 13.03 -91.81 -1.20 1.51 16 16 N -0.29 -4.61 11.82 29.29 0.35 -4.26 16 17 C 0.12 2.66 3.76 -3.71 -0.01 2.65 16 18 N -0.60 -13.99 2.76 -164.77 -0.45 -14.45 16 19 C -0.26 -7.31 9.07 -15.06 -0.14 -7.45 16 20 H 0.09 2.71 6.36 -52.49 -0.33 2.38 16 21 C 0.03 0.82 5.24 -17.43 -0.09 0.73 16 22 N -0.90 -28.62 13.97 55.49 0.78 -27.85 16 23 Si 0.88 23.08 24.35 -169.99 -4.14 18.94 16 24 H -0.29 -7.71 6.72 56.52 0.38 -7.33 16 25 H -0.30 -8.08 7.11 56.52 0.40 -7.68 16 26 H -0.27 -6.77 6.44 56.52 0.36 -6.41 16 27 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.06 1.27 7.65 -51.93 -0.40 0.87 16 29 H 0.06 1.13 7.41 -51.93 -0.38 0.74 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.39 3.41 8.60 -40.82 -0.35 3.06 16 35 H 0.13 0.69 8.09 -51.92 -0.42 0.27 16 36 H 0.12 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.22 1.41 8.06 -52.49 -0.42 0.99 16 38 H 0.22 2.25 8.06 -52.49 -0.42 1.83 16 39 H 0.02 0.50 6.95 -51.93 -0.36 0.14 16 40 H 0.08 1.98 4.61 -51.93 -0.24 1.74 16 41 H 0.26 7.95 8.31 -40.82 -0.34 7.61 16 LS Contribution 330.28 15.07 4.98 4.98 Total: -1.00 -39.51 330.28 -8.07 -47.57 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -5.88 Total: 2.00 kcal Atomic # 6 Polarization: 9.75 SS G_CDS: -3.11 Total: 6.64 kcal Atomic # 7 Polarization: -69.43 SS G_CDS: 0.00 Total: -69.43 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.09 Total: -10.71 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -4.14 Total: 18.94 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -39.51 -8.07 -47.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072052186.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.020 kcal (2) G-P(sol) polarization free energy of solvation -39.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds