Wall clock time and date at job start Tue Mar 31 2020 03:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.58265 * 2 1 4 4 C 1.53188 * 109.58740 * 120.28003 * 2 1 3 5 5 C 1.53043 * 109.31339 * 174.42701 * 4 2 1 6 6 C 1.53039 * 109.53670 * 298.63395 * 5 4 2 7 7 H 1.09004 * 109.49476 * 301.41467 * 6 5 4 8 8 N 1.46493 * 109.49706 * 181.31713 * 6 5 4 9 9 C 1.34782 * 119.99838 * 155.00165 * 8 6 5 10 10 O 1.21280 * 120.00136 * 359.97438 * 9 8 6 11 11 C 1.50700 * 119.99883 * 179.97438 * 9 8 6 12 12 N 1.46500 * 109.47280 * 179.97438 * 11 9 8 13 13 C 1.34430 * 126.82250 * 124.70718 * 12 11 9 14 14 N 1.30837 * 108.07457 * 179.89827 * 13 12 11 15 15 C 1.33248 * 109.82764 * 0.37638 * 14 13 12 16 16 N 1.30711 * 108.94613 * 359.76648 * 15 14 13 17 17 C 1.53196 * 109.31105 * 61.36524 * 6 5 4 18 18 N 1.46924 * 109.58607 * 239.57130 * 2 1 3 19 19 C 1.36929 * 120.63449 * 6.60424 * 18 2 1 20 20 H 1.07998 * 120.00095 * 331.55381 * 19 18 2 21 21 C 1.38817 * 120.00464 * 151.55897 * 19 18 2 22 22 N 1.31615 * 120.00284 * 160.52296 * 21 19 18 23 23 Si 1.86795 * 119.99586 * 340.52334 * 21 19 18 24 24 H 1.48497 * 109.47285 * 94.85835 * 23 21 19 25 25 H 1.48506 * 109.47021 * 214.85680 * 23 21 19 26 26 H 1.48504 * 109.47386 * 334.85725 * 23 21 19 27 27 H 1.08997 * 109.47758 * 299.71731 * 1 2 3 28 28 H 1.09002 * 109.47275 * 59.72427 * 1 2 3 29 29 H 1.09001 * 109.46713 * 179.72014 * 1 2 3 30 30 H 1.09000 * 109.49722 * 294.37641 * 4 2 1 31 31 H 1.08991 * 109.49805 * 54.46928 * 4 2 1 32 32 H 1.09004 * 109.46022 * 58.65138 * 5 4 2 33 33 H 1.08997 * 109.45788 * 178.61138 * 5 4 2 34 34 H 0.96994 * 120.00446 * 334.99693 * 8 6 5 35 35 H 1.09009 * 109.47214 * 299.99527 * 11 9 8 36 36 H 1.08996 * 109.47418 * 59.99504 * 11 9 8 37 37 H 1.07998 * 125.96267 * 0.03975 * 13 12 11 38 38 H 1.08002 * 125.52262 * 179.80122 * 15 14 13 39 39 H 1.08996 * 109.59032 * 65.15265 * 17 6 5 40 40 H 1.09004 * 109.58376 * 185.57776 * 17 6 5 41 41 H 0.96997 * 120.00346 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0435 -0.7277 1.2463 5 6 3.5675 -0.8463 1.1713 6 6 3.9570 -1.6656 -0.0613 7 1 3.4984 -2.6527 -0.0017 8 7 5.4143 -1.8052 -0.1151 9 6 5.9678 -2.8489 -0.7639 10 8 5.2594 -3.6727 -1.3028 11 6 7.4669 -2.9922 -0.8197 12 7 7.8144 -4.1981 -1.5755 13 6 8.6180 -4.2715 -2.6507 14 7 8.6743 -5.5222 -3.0308 15 6 7.9166 -6.2720 -2.2314 16 7 7.3693 -5.5063 -1.3245 17 6 3.4651 -0.9485 -1.3225 18 7 2.0225 -0.7011 -1.1936 19 6 1.1538 -1.1159 -2.1673 20 1 0.1335 -1.3612 -1.9119 21 6 1.5843 -1.2211 -3.4828 22 7 0.9111 -1.9605 -4.3385 23 14 3.1194 -0.3134 -4.0384 24 1 4.2906 -1.2222 -3.9519 25 1 2.9463 0.1386 -5.4424 26 1 3.3417 0.8653 -3.1628 27 1 -0.3634 0.5094 0.8924 28 1 -0.3634 0.5181 -0.8875 29 1 -0.3633 -1.0277 -0.0050 30 1 1.7660 -0.1640 2.1370 31 1 1.6030 -1.7235 1.2936 32 1 4.0061 0.1490 1.0991 33 1 3.9378 -1.3419 2.0687 34 1 5.9809 -1.1466 0.3162 35 1 7.8974 -2.1190 -1.3102 36 1 7.8623 -3.0719 0.1928 37 1 9.1299 -3.4430 -3.1176 38 1 7.7778 -7.3396 -2.3184 39 1 3.9903 0.0004 -1.4317 40 1 3.6519 -1.5744 -2.1951 41 1 1.2121 -2.0344 -5.2576 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072052186.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:54 Heat of formation + Delta-G solvation = 59.102845 kcal Electronic energy + Delta-G solvation = -24213.800881 eV Core-core repulsion = 20744.648741 eV Total energy + Delta-G solvation = -3469.152140 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.02451 -41.05880 -39.45901 -36.16991 -35.03483 -34.68984 -32.62180 -32.44160 -32.16893 -29.24835 -27.70630 -26.51894 -24.55046 -23.45961 -22.93152 -22.23905 -21.66861 -20.91636 -18.65297 -18.52838 -18.30048 -17.49379 -16.81417 -16.61888 -16.43358 -15.95309 -15.76338 -15.34353 -15.17850 -15.10896 -14.72336 -14.61629 -14.43147 -13.82897 -13.72831 -13.45925 -13.05584 -12.81035 -12.72780 -12.55222 -12.50112 -12.10043 -11.79253 -11.69446 -11.49177 -11.35715 -11.27074 -11.05305 -10.80531 -10.79606 -10.54788 -10.18587 -8.89879 -8.19085 -5.50619 0.64696 1.21054 1.28331 1.31355 1.38898 1.50830 1.98417 2.09300 2.38277 3.02810 3.29732 3.49853 3.54073 3.71202 3.82753 4.01407 4.05531 4.09042 4.11768 4.25473 4.38090 4.38913 4.57815 4.65810 4.81525 4.84862 4.95689 4.98671 5.10256 5.15581 5.21543 5.25196 5.40864 5.44809 5.48419 5.63152 5.84426 5.87967 6.14951 6.51626 6.90624 7.08665 7.24961 7.62905 8.00344 9.00616 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.016730 B = 0.005132 C = 0.004341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.201518 B = 5454.873449 C = 6448.315559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.158 3.842 3 H 0.051 0.949 4 C -0.123 4.123 5 C -0.105 4.105 6 C 0.138 3.862 7 H 0.045 0.955 8 N -0.703 5.703 9 C 0.483 3.517 10 O -0.573 6.573 11 C 0.115 3.885 12 N -0.378 5.378 13 C 0.261 3.739 14 N -0.577 5.577 15 C 0.182 3.818 16 N -0.337 5.337 17 C 0.121 3.879 18 N -0.615 5.615 19 C -0.236 4.236 20 H 0.063 0.937 21 C -0.045 4.045 22 N -0.962 5.962 23 Si 0.949 3.051 24 H -0.300 1.300 25 H -0.313 1.313 26 H -0.243 1.243 27 H 0.085 0.915 28 H 0.037 0.963 29 H 0.033 0.967 30 H 0.103 0.897 31 H 0.042 0.958 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.424 0.576 35 H 0.184 0.816 36 H 0.157 0.843 37 H 0.268 0.732 38 H 0.234 0.766 39 H 0.043 0.957 40 H 0.028 0.972 41 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.190 5.874 14.539 24.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.054 3.946 3 H 0.069 0.931 4 C -0.162 4.162 5 C -0.143 4.143 6 C 0.031 3.969 7 H 0.063 0.937 8 N -0.358 5.358 9 C 0.268 3.732 10 O -0.451 6.451 11 C -0.010 4.010 12 N -0.170 5.170 13 C -0.035 4.035 14 N -0.305 5.305 15 C -0.120 4.120 16 N -0.164 5.164 17 C -0.006 4.006 18 N -0.340 5.340 19 C -0.366 4.366 20 H 0.081 0.919 21 C -0.239 4.239 22 N -0.609 5.609 23 Si 0.779 3.221 24 H -0.228 1.228 25 H -0.242 1.242 26 H -0.167 1.167 27 H 0.104 0.896 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.122 0.878 31 H 0.061 0.939 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.263 0.737 35 H 0.201 0.799 36 H 0.174 0.826 37 H 0.284 0.716 38 H 0.250 0.750 39 H 0.061 0.939 40 H 0.047 0.953 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 17.334 4.956 14.389 23.066 hybrid contribution 0.190 0.100 -1.176 1.195 sum 17.524 5.055 13.213 22.521 Atomic orbital electron populations 1.21772 0.95267 1.00699 1.01324 1.20884 0.94001 0.94231 0.85508 0.93095 1.21987 0.95116 1.00670 0.98427 1.21663 0.96549 1.00644 0.95426 1.21323 0.79691 0.99000 0.96891 0.93697 1.45764 1.07358 1.26987 1.55678 1.21468 0.92015 0.81337 0.78362 1.90871 1.64669 1.43478 1.46062 1.22036 0.91060 0.85868 1.01991 1.50172 1.35509 1.06588 1.24685 1.27040 0.92413 0.97736 0.86313 1.70510 1.26803 1.02875 1.30271 1.26485 0.93067 1.02307 0.90176 1.78090 1.22477 0.89281 1.26552 1.21644 0.85030 0.97009 0.96872 1.44565 1.01854 1.66279 1.21316 1.18902 0.94981 1.36022 0.86716 0.91902 1.25997 1.01073 1.00313 0.96487 1.69967 1.43941 1.41833 1.05147 0.85843 0.79917 0.80058 0.76251 1.22829 1.24222 1.16697 0.89638 0.94333 0.94811 0.87835 0.93876 0.88955 0.89158 0.73713 0.79920 0.82576 0.71645 0.74953 0.93913 0.95320 0.93467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.68 7.94 71.98 0.57 -4.10 16 2 C 0.16 5.55 3.50 44.97 0.16 5.71 16 3 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 4 C -0.12 -3.29 5.37 30.67 0.16 -3.13 16 5 C -0.11 -2.38 5.35 30.62 0.16 -2.22 16 6 C 0.14 4.52 2.60 45.07 0.12 4.63 16 7 H 0.04 1.91 7.58 -2.39 -0.02 1.90 16 8 N -0.70 -16.37 5.08 -442.16 -2.25 -18.62 16 9 C 0.48 13.81 7.83 87.66 0.69 14.49 16 10 O -0.57 -25.61 15.40 -3.03 -0.05 -25.65 16 11 C 0.12 1.76 7.03 85.63 0.60 2.36 16 12 N -0.38 -9.17 3.41 -355.80 -1.21 -10.38 16 13 C 0.26 5.43 12.63 180.36 2.28 7.71 16 14 N -0.58 -15.78 11.19 -203.99 -2.28 -18.06 16 15 C 0.18 5.22 13.03 180.76 2.36 7.57 16 16 N -0.34 -10.82 11.82 -61.24 -0.72 -11.55 16 17 C 0.12 5.12 3.76 86.36 0.33 5.45 16 18 N -0.61 -28.65 2.76 -675.22 -1.86 -30.51 16 19 C -0.24 -13.72 9.07 84.04 0.76 -12.96 16 20 H 0.06 3.93 6.36 -2.91 -0.02 3.91 16 21 C -0.04 -2.78 5.24 84.86 0.45 -2.33 16 22 N -0.96 -64.59 13.97 21.65 0.30 -64.29 16 23 Si 0.95 49.43 24.35 68.60 1.67 51.10 16 24 H -0.30 -15.84 6.72 99.48 0.67 -15.17 16 25 H -0.31 -16.54 7.11 99.48 0.71 -15.83 16 26 H -0.24 -11.35 6.44 99.48 0.64 -10.71 16 27 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 28 H 0.04 1.52 7.65 -2.39 -0.02 1.50 16 29 H 0.03 1.32 7.41 -2.39 -0.02 1.30 16 30 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 33 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.42 4.89 8.60 -92.71 -0.80 4.09 16 35 H 0.18 0.77 8.09 -2.38 -0.02 0.75 16 36 H 0.16 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.27 2.24 8.06 -2.91 -0.02 2.21 16 38 H 0.23 5.09 8.06 -2.91 -0.02 5.06 16 39 H 0.04 1.65 6.95 -2.39 -0.02 1.63 16 40 H 0.03 1.50 4.61 -2.39 -0.01 1.49 16 41 H 0.26 16.56 8.31 -92.71 -0.77 15.79 16 Total: -1.00 -97.77 330.28 2.37 -95.39 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: 0.15 Total: 9.38 kcal Atomic # 6 Polarization: 14.55 SS G_CDS: 8.63 Total: 23.18 kcal Atomic # 7 Polarization: -145.38 SS G_CDS: -8.02 Total: -153.41 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: -0.05 Total: -25.65 kcal Atomic # 14 Polarization: 49.43 SS G_CDS: 1.67 Total: 51.10 kcal Total: -97.77 2.37 -95.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072052186.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.497 kcal (2) G-P(sol) polarization free energy of solvation -97.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds