Wall clock time and date at job start Tue Mar 31 2020 03:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.58599 * 2 1 4 4 C 1.53190 * 109.58580 * 120.28200 * 2 1 3 5 5 C 1.53048 * 109.31193 * 174.56708 * 4 2 1 6 6 C 1.53041 * 109.53460 * 298.63430 * 5 4 2 7 7 H 1.09007 * 109.49146 * 181.34784 * 6 5 4 8 8 N 1.46496 * 109.49722 * 301.41286 * 6 5 4 9 9 C 1.34781 * 119.99804 * 205.00265 * 8 6 5 10 10 O 1.21280 * 119.99880 * 359.97438 * 9 8 6 11 11 C 1.50694 * 119.99853 * 180.02562 * 9 8 6 12 12 N 1.46504 * 109.47092 * 179.97438 * 11 9 8 13 13 C 1.34429 * 126.82372 * 124.71019 * 12 11 9 14 14 N 1.30830 * 108.07611 * 179.89750 * 13 12 11 15 15 C 1.33244 * 109.83059 * 0.37657 * 14 13 12 16 16 N 1.30708 * 108.94312 * 359.76795 * 15 14 13 17 17 C 1.53184 * 109.31229 * 61.36951 * 6 5 4 18 18 N 1.46922 * 109.70690 * 239.64414 * 2 1 3 19 19 C 1.36939 * 120.62829 * 6.55765 * 18 2 1 20 20 H 1.07994 * 120.00167 * 330.20359 * 19 18 2 21 21 C 1.38814 * 120.00028 * 150.20969 * 19 18 2 22 22 N 1.31623 * 119.99885 * 344.45230 * 21 19 18 23 23 Si 1.86793 * 120.00116 * 164.45885 * 21 19 18 24 24 H 1.48506 * 109.47356 * 59.99495 * 23 21 19 25 25 H 1.48496 * 109.47285 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.47248 * 299.99470 * 23 21 19 27 27 H 1.09001 * 109.47342 * 299.71937 * 1 2 3 28 28 H 1.09007 * 109.46837 * 59.71692 * 1 2 3 29 29 H 1.08998 * 109.46944 * 179.71527 * 1 2 3 30 30 H 1.08993 * 109.49777 * 54.61471 * 4 2 1 31 31 H 1.09003 * 109.52700 * 294.53042 * 4 2 1 32 32 H 1.08999 * 109.45479 * 178.61359 * 5 4 2 33 33 H 1.09005 * 109.45792 * 58.65736 * 5 4 2 34 34 H 0.97001 * 120.00253 * 25.00300 * 8 6 5 35 35 H 1.09001 * 109.47506 * 299.99861 * 11 9 8 36 36 H 1.09001 * 109.47318 * 59.99918 * 11 9 8 37 37 H 1.08000 * 125.95749 * 0.03751 * 13 12 11 38 38 H 1.07993 * 125.52519 * 179.80328 * 15 14 13 39 39 H 1.09000 * 109.59118 * 65.14895 * 17 6 5 40 40 H 1.09003 * 109.58918 * 185.57565 * 17 6 5 41 41 H 0.97001 * 119.99832 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7278 1.2463 5 6 3.5679 -0.8433 1.1729 6 6 3.9604 -1.6608 -0.0599 7 1 5.0450 -1.7629 -0.0984 8 7 3.3466 -2.9887 0.0183 9 6 3.9061 -4.0289 -0.6309 10 8 4.9173 -3.8654 -1.2802 11 6 3.2744 -5.3947 -0.5510 12 7 4.0657 -6.3454 -1.3362 13 6 4.5995 -7.5006 -0.9029 14 7 5.2282 -8.0585 -1.9055 15 6 5.1254 -7.2887 -2.9882 16 7 4.4225 -6.2279 -2.6895 17 6 3.4686 -0.9435 -1.3209 18 7 2.0255 -0.6990 -1.1935 19 6 1.1586 -1.1143 -2.1689 20 1 0.1446 -1.3825 -1.9117 21 6 1.5834 -1.1907 -3.4883 22 7 2.6935 -0.5880 -3.8582 23 14 0.5793 -2.1485 -4.7388 24 1 -0.7822 -1.5631 -4.8334 25 1 1.2420 -2.0763 -6.0657 26 1 0.4795 -3.5672 -4.3114 27 1 -0.3634 0.5095 0.8925 28 1 -0.3633 0.5183 -0.8875 29 1 -0.3633 -1.0276 -0.0051 30 1 1.6050 -1.7245 1.2922 31 1 1.7638 -0.1659 2.1375 32 1 3.9380 -1.3390 2.0704 33 1 4.0045 0.1530 1.1022 34 1 2.5376 -3.1193 0.5373 35 1 3.2422 -5.7199 0.4888 36 1 2.2608 -5.3501 -0.9493 37 1 4.5208 -7.8996 0.0976 38 1 5.5529 -7.5062 -3.9557 39 1 3.9921 0.0065 -1.4287 40 1 3.6577 -1.5683 -2.1939 41 1 2.9905 -0.6417 -4.7801 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072052187.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:57 Heat of formation + Delta-G solvation = 85.337098 kcal Electronic energy + Delta-G solvation = -24662.879001 eV Core-core repulsion = 21194.864464 eV Total energy + Delta-G solvation = -3468.014537 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.91231 -39.54029 -37.64920 -34.22333 -33.81833 -32.76667 -31.07921 -30.86162 -29.92906 -27.91589 -26.10844 -24.95280 -22.43938 -22.19213 -21.83569 -20.75085 -20.33151 -18.80686 -17.31769 -17.22045 -16.26680 -15.73451 -15.28708 -15.01507 -14.77899 -14.39839 -14.06167 -13.93964 -13.77358 -13.39449 -13.21225 -12.96104 -12.64308 -12.44774 -11.90503 -11.65891 -11.27995 -11.19923 -10.98560 -10.93061 -10.70348 -10.42162 -10.36790 -10.03798 -9.97936 -9.88635 -9.62343 -9.56851 -9.50266 -9.20216 -8.46504 -8.44810 -6.61274 -5.75603 -3.20697 1.77241 2.31956 2.94337 3.11937 3.38917 3.45286 3.48037 3.57583 4.36127 4.50154 4.50744 4.89798 4.98466 5.08785 5.26810 5.31375 5.37736 5.42443 5.46543 5.55652 5.95227 6.05403 6.10116 6.27588 6.30683 6.31226 6.38977 6.45801 6.55017 6.58271 6.62689 6.80757 6.86130 7.01265 7.07383 7.33738 7.66359 7.82300 7.94895 8.20503 8.48417 8.63572 9.22642 9.87186 10.43324 11.32378 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.013927 B = 0.006204 C = 0.004845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.971784 B = 4512.352950 C = 5777.460566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.165 3.835 3 H 0.024 0.976 4 C -0.130 4.130 5 C -0.118 4.118 6 C 0.121 3.879 7 H 0.074 0.926 8 N -0.697 5.697 9 C 0.500 3.500 10 O -0.518 6.518 11 C 0.109 3.891 12 N -0.363 5.363 13 C 0.246 3.754 14 N -0.549 5.549 15 C 0.183 3.817 16 N -0.275 5.275 17 C 0.162 3.838 18 N -0.582 5.582 19 C -0.256 4.256 20 H 0.067 0.933 21 C 0.010 3.990 22 N -0.896 5.896 23 Si 0.897 3.103 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.285 1.285 27 H 0.036 0.964 28 H 0.060 0.940 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.071 0.929 34 H 0.395 0.605 35 H 0.124 0.876 36 H 0.119 0.881 37 H 0.216 0.784 38 H 0.214 0.786 39 H 0.025 0.975 40 H 0.096 0.904 41 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.299 -7.978 12.504 14.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.058 3.942 3 H 0.041 0.959 4 C -0.169 4.169 5 C -0.156 4.156 6 C 0.015 3.985 7 H 0.092 0.908 8 N -0.349 5.349 9 C 0.283 3.717 10 O -0.392 6.392 11 C -0.018 4.018 12 N -0.154 5.154 13 C -0.051 4.051 14 N -0.276 5.276 15 C -0.120 4.120 16 N -0.102 5.102 17 C 0.036 3.964 18 N -0.305 5.305 19 C -0.386 4.386 20 H 0.084 0.916 21 C -0.190 4.190 22 N -0.540 5.540 23 Si 0.727 3.273 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.212 1.212 27 H 0.055 0.945 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.230 0.770 35 H 0.142 0.858 36 H 0.137 0.863 37 H 0.233 0.767 38 H 0.231 0.769 39 H 0.043 0.957 40 H 0.114 0.886 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.466 -7.496 11.375 13.631 hybrid contribution -0.965 -0.447 -0.262 1.095 sum -0.499 -7.943 11.112 13.668 Atomic orbital electron populations 1.21785 0.96107 1.01193 1.00156 1.20458 0.92874 0.93649 0.87226 0.95865 1.22065 0.95057 1.00635 0.99150 1.21692 0.97065 1.00193 0.96664 1.21782 0.96859 0.81440 0.98374 0.90755 1.45745 1.29321 1.08501 1.51310 1.20121 0.85386 0.85725 0.80485 1.90778 1.24720 1.84384 1.39349 1.21633 0.95895 0.88101 0.96163 1.49991 1.40135 1.16920 1.08359 1.25972 0.93398 0.85292 1.00451 1.70476 1.24939 1.32721 0.99499 1.26001 0.98077 0.88760 0.99141 1.78366 1.18699 1.21628 0.91478 1.21162 0.83819 0.97052 0.94407 1.44020 1.02585 1.64801 1.19092 1.18985 0.95055 1.38525 0.86008 0.91565 1.25068 0.97688 0.99205 0.97021 1.69966 1.23858 1.43172 1.16971 0.86466 0.79394 0.80257 0.81141 1.21083 1.21657 1.21154 0.94454 0.92070 0.92987 0.92713 0.92862 0.93053 0.91083 0.77014 0.85773 0.86292 0.76734 0.76934 0.95732 0.88614 0.93542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.33 7.96 37.16 0.30 -2.04 16 2 C 0.16 3.10 3.49 -67.60 -0.24 2.86 16 3 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 4 C -0.13 -1.90 5.21 -26.61 -0.14 -2.04 16 5 C -0.12 -1.73 5.59 -26.69 -0.15 -1.88 16 6 C 0.12 2.18 2.81 -67.82 -0.19 1.99 16 7 H 0.07 1.41 7.58 -51.92 -0.39 1.02 16 8 N -0.70 -11.12 4.92 -53.69 -0.26 -11.38 16 9 C 0.50 8.61 7.83 -10.99 -0.09 8.53 16 10 O -0.52 -11.52 15.40 5.56 0.09 -11.43 16 11 C 0.11 1.35 7.03 -5.19 -0.04 1.31 16 12 N -0.36 -5.41 3.41 -63.81 -0.22 -5.63 16 13 C 0.25 3.01 12.63 -90.66 -1.14 1.87 16 14 N -0.55 -8.10 11.19 -15.83 -0.18 -8.28 16 15 C 0.18 2.87 13.03 -91.81 -1.20 1.67 16 16 N -0.28 -5.12 11.81 29.29 0.35 -4.77 16 17 C 0.16 3.78 4.88 -3.71 -0.02 3.76 16 18 N -0.58 -13.36 2.90 -164.78 -0.48 -13.84 16 19 C -0.26 -6.60 8.59 -15.06 -0.13 -6.73 16 20 H 0.07 1.66 6.24 -52.49 -0.33 1.33 16 21 C 0.01 0.27 4.94 -17.43 -0.09 0.19 16 22 N -0.90 -26.40 11.23 55.49 0.62 -25.78 16 23 Si 0.90 22.17 29.58 -169.99 -5.03 17.14 16 24 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 26 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 27 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 1.18 7.67 -51.93 -0.40 0.78 16 29 H 0.05 0.89 7.41 -51.93 -0.38 0.51 16 30 H 0.05 0.76 6.40 -51.93 -0.33 0.43 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.40 5.27 6.77 -40.82 -0.28 4.99 16 35 H 0.12 0.84 8.09 -51.93 -0.42 0.42 16 36 H 0.12 1.42 8.14 -51.93 -0.42 1.00 16 37 H 0.22 1.42 8.06 -52.49 -0.42 0.99 16 38 H 0.21 2.58 8.06 -52.49 -0.42 2.16 16 39 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.10 2.68 6.14 -51.93 -0.32 2.36 16 41 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 333.46 15.07 5.03 5.03 Total: -1.00 -35.98 333.46 -8.99 -44.97 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -5.79 Total: 4.47 kcal Atomic # 6 Polarization: 12.62 SS G_CDS: -3.12 Total: 9.50 kcal Atomic # 7 Polarization: -69.51 SS G_CDS: -0.17 Total: -69.67 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.09 Total: -11.43 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.03 Total: 17.14 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -35.98 -8.99 -44.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072052187.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.308 kcal (2) G-P(sol) polarization free energy of solvation -35.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds