Wall clock time and date at job start Tue Mar 31 2020 03:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.58599 * 2 1 4 4 C 1.53190 * 109.58580 * 120.28200 * 2 1 3 5 5 C 1.53048 * 109.31193 * 174.56708 * 4 2 1 6 6 C 1.53041 * 109.53460 * 298.63430 * 5 4 2 7 7 H 1.09007 * 109.49146 * 181.34784 * 6 5 4 8 8 N 1.46496 * 109.49722 * 301.41286 * 6 5 4 9 9 C 1.34781 * 119.99804 * 205.00265 * 8 6 5 10 10 O 1.21280 * 119.99880 * 359.97438 * 9 8 6 11 11 C 1.50694 * 119.99853 * 180.02562 * 9 8 6 12 12 N 1.46504 * 109.47092 * 179.97438 * 11 9 8 13 13 C 1.34429 * 126.82372 * 124.71019 * 12 11 9 14 14 N 1.30830 * 108.07611 * 179.89750 * 13 12 11 15 15 C 1.33244 * 109.83059 * 0.37657 * 14 13 12 16 16 N 1.30708 * 108.94312 * 359.76795 * 15 14 13 17 17 C 1.53184 * 109.31229 * 61.36951 * 6 5 4 18 18 N 1.46922 * 109.70690 * 239.64414 * 2 1 3 19 19 C 1.36939 * 120.62829 * 6.55765 * 18 2 1 20 20 H 1.07994 * 120.00167 * 330.20359 * 19 18 2 21 21 C 1.38814 * 120.00028 * 150.20969 * 19 18 2 22 22 N 1.31623 * 119.99885 * 344.45230 * 21 19 18 23 23 Si 1.86793 * 120.00116 * 164.45885 * 21 19 18 24 24 H 1.48506 * 109.47356 * 59.99495 * 23 21 19 25 25 H 1.48496 * 109.47285 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.47248 * 299.99470 * 23 21 19 27 27 H 1.09001 * 109.47342 * 299.71937 * 1 2 3 28 28 H 1.09007 * 109.46837 * 59.71692 * 1 2 3 29 29 H 1.08998 * 109.46944 * 179.71527 * 1 2 3 30 30 H 1.08993 * 109.49777 * 54.61471 * 4 2 1 31 31 H 1.09003 * 109.52700 * 294.53042 * 4 2 1 32 32 H 1.08999 * 109.45479 * 178.61359 * 5 4 2 33 33 H 1.09005 * 109.45792 * 58.65736 * 5 4 2 34 34 H 0.97001 * 120.00253 * 25.00300 * 8 6 5 35 35 H 1.09001 * 109.47506 * 299.99861 * 11 9 8 36 36 H 1.09001 * 109.47318 * 59.99918 * 11 9 8 37 37 H 1.08000 * 125.95749 * 0.03751 * 13 12 11 38 38 H 1.07993 * 125.52519 * 179.80328 * 15 14 13 39 39 H 1.09000 * 109.59118 * 65.14895 * 17 6 5 40 40 H 1.09003 * 109.58918 * 185.57565 * 17 6 5 41 41 H 0.97001 * 119.99832 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7278 1.2463 5 6 3.5679 -0.8433 1.1729 6 6 3.9604 -1.6608 -0.0599 7 1 5.0450 -1.7629 -0.0984 8 7 3.3466 -2.9887 0.0183 9 6 3.9061 -4.0289 -0.6309 10 8 4.9173 -3.8654 -1.2802 11 6 3.2744 -5.3947 -0.5510 12 7 4.0657 -6.3454 -1.3362 13 6 4.5995 -7.5006 -0.9029 14 7 5.2282 -8.0585 -1.9055 15 6 5.1254 -7.2887 -2.9882 16 7 4.4225 -6.2279 -2.6895 17 6 3.4686 -0.9435 -1.3209 18 7 2.0255 -0.6990 -1.1935 19 6 1.1586 -1.1143 -2.1689 20 1 0.1446 -1.3825 -1.9117 21 6 1.5834 -1.1907 -3.4883 22 7 2.6935 -0.5880 -3.8582 23 14 0.5793 -2.1485 -4.7388 24 1 -0.7822 -1.5631 -4.8334 25 1 1.2420 -2.0763 -6.0657 26 1 0.4795 -3.5672 -4.3114 27 1 -0.3634 0.5095 0.8925 28 1 -0.3633 0.5183 -0.8875 29 1 -0.3633 -1.0276 -0.0051 30 1 1.6050 -1.7245 1.2922 31 1 1.7638 -0.1659 2.1375 32 1 3.9380 -1.3390 2.0704 33 1 4.0045 0.1530 1.1022 34 1 2.5376 -3.1193 0.5373 35 1 3.2422 -5.7199 0.4888 36 1 2.2608 -5.3501 -0.9493 37 1 4.5208 -7.8996 0.0976 38 1 5.5529 -7.5062 -3.9557 39 1 3.9921 0.0065 -1.4287 40 1 3.6577 -1.5683 -2.1939 41 1 2.9905 -0.6417 -4.7801 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072052187.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:56 Heat of formation + Delta-G solvation = 60.313420 kcal Electronic energy + Delta-G solvation = -24663.964109 eV Core-core repulsion = 21194.864464 eV Total energy + Delta-G solvation = -3469.099645 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.98058 -40.95189 -39.16167 -35.79708 -34.95139 -34.50228 -32.34077 -32.12561 -31.74115 -29.04166 -27.73076 -26.64824 -23.93924 -23.53937 -22.86277 -22.15631 -21.70137 -20.37839 -18.55103 -18.41718 -17.99317 -17.19223 -16.67209 -16.43585 -16.03658 -15.82928 -15.60664 -15.34996 -15.02856 -14.79406 -14.64730 -14.40812 -14.01155 -13.80804 -13.48392 -12.98298 -12.87247 -12.74314 -12.60404 -12.56633 -12.41796 -12.14609 -12.07914 -11.55735 -11.28255 -11.19952 -11.03514 -10.99408 -10.77057 -10.55480 -10.43719 -9.94799 -8.57482 -7.83298 -5.28557 0.73849 1.35741 1.38118 1.42488 1.47067 1.65672 2.03562 2.35441 2.49030 3.33708 3.52440 3.61497 3.63312 3.78129 4.04654 4.07799 4.12082 4.17295 4.20963 4.44765 4.51234 4.66222 4.75460 4.84518 4.97712 5.05837 5.09466 5.15008 5.24355 5.29838 5.34694 5.48947 5.59709 5.62844 5.69505 5.74032 5.74880 5.93704 6.43354 6.67657 7.13593 7.18264 7.38115 7.93375 8.43884 9.21593 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.013927 B = 0.006204 C = 0.004845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.971784 B = 4512.352950 C = 5777.460566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.152 3.848 3 H 0.007 0.993 4 C -0.117 4.117 5 C -0.109 4.109 6 C 0.133 3.867 7 H 0.058 0.942 8 N -0.685 5.685 9 C 0.490 3.510 10 O -0.577 6.577 11 C 0.113 3.887 12 N -0.374 5.374 13 C 0.265 3.735 14 N -0.574 5.574 15 C 0.181 3.819 16 N -0.347 5.347 17 C 0.172 3.828 18 N -0.592 5.592 19 C -0.234 4.234 20 H 0.080 0.920 21 C -0.054 4.054 22 N -0.938 5.938 23 Si 0.949 3.051 24 H -0.269 1.269 25 H -0.310 1.310 26 H -0.283 1.283 27 H 0.075 0.925 28 H 0.030 0.970 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.066 0.934 34 H 0.412 0.588 35 H 0.194 0.806 36 H 0.125 0.875 37 H 0.276 0.724 38 H 0.231 0.769 39 H -0.011 1.011 40 H 0.042 0.958 41 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.251 -9.670 16.852 19.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.047 3.953 3 H 0.025 0.975 4 C -0.156 4.156 5 C -0.147 4.147 6 C 0.026 3.974 7 H 0.076 0.924 8 N -0.338 5.338 9 C 0.276 3.724 10 O -0.456 6.456 11 C -0.012 4.012 12 N -0.165 5.165 13 C -0.030 4.030 14 N -0.302 5.302 15 C -0.121 4.121 16 N -0.174 5.174 17 C 0.045 3.955 18 N -0.316 5.316 19 C -0.364 4.364 20 H 0.098 0.902 21 C -0.249 4.249 22 N -0.585 5.585 23 Si 0.779 3.221 24 H -0.194 1.194 25 H -0.237 1.237 26 H -0.210 1.210 27 H 0.094 0.906 28 H 0.050 0.950 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.085 0.915 34 H 0.250 0.750 35 H 0.211 0.789 36 H 0.143 0.857 37 H 0.291 0.709 38 H 0.247 0.753 39 H 0.007 0.993 40 H 0.060 0.940 41 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -1.561 -9.191 15.795 18.341 hybrid contribution -0.360 0.133 -1.527 1.575 sum -1.921 -9.058 14.268 17.009 Atomic orbital electron populations 1.21722 0.94569 1.01590 1.00669 1.20798 0.94238 0.93051 0.87235 0.97501 1.21947 0.94455 1.01445 0.97731 1.21658 0.97459 0.99620 0.95944 1.21374 0.95979 0.82633 0.97370 0.92364 1.45600 1.29704 1.07382 1.51067 1.21082 0.84661 0.87699 0.78997 1.90762 1.27593 1.85595 1.41663 1.21934 0.94787 0.84861 0.99577 1.50102 1.40912 1.18128 1.07399 1.27121 0.90414 0.83672 1.01801 1.70504 1.26316 1.33370 0.99963 1.26427 0.97212 0.88192 1.00311 1.78268 1.21085 1.23636 0.94411 1.20812 0.84330 0.94966 0.95384 1.44242 1.01976 1.65479 1.19925 1.19373 0.95511 1.35404 0.86142 0.90229 1.25742 0.98860 1.01200 0.99106 1.70158 1.26106 1.46054 1.16148 0.85613 0.78686 0.79255 0.78560 1.19449 1.23695 1.20966 0.90589 0.95048 0.92487 0.90957 0.89165 0.89074 0.91546 0.74972 0.78907 0.85692 0.70913 0.75293 0.99349 0.93967 0.95109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.03 7.96 71.98 0.57 -3.46 16 2 C 0.15 5.40 3.49 44.98 0.16 5.56 16 3 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 4 C -0.12 -2.88 5.21 30.67 0.16 -2.72 16 5 C -0.11 -2.83 5.59 30.62 0.17 -2.66 16 6 C 0.13 4.74 2.81 45.07 0.13 4.87 16 7 H 0.06 2.27 7.58 -2.38 -0.02 2.25 16 8 N -0.69 -20.46 4.92 -442.18 -2.17 -22.63 16 9 C 0.49 16.39 7.83 87.65 0.69 17.08 16 10 O -0.58 -26.55 15.40 -3.03 -0.05 -26.59 16 11 C 0.11 2.45 7.03 85.63 0.60 3.05 16 12 N -0.37 -10.48 3.41 -355.80 -1.21 -11.69 16 13 C 0.27 5.65 12.63 180.36 2.28 7.93 16 14 N -0.57 -16.08 11.19 -204.01 -2.28 -18.37 16 15 C 0.18 5.74 13.03 180.77 2.36 8.10 16 16 N -0.35 -13.13 11.81 -61.25 -0.72 -13.86 16 17 C 0.17 8.39 4.88 86.36 0.42 8.81 16 18 N -0.59 -27.32 2.90 -675.24 -1.96 -29.28 16 19 C -0.23 -12.10 8.59 84.03 0.72 -11.38 16 20 H 0.08 3.88 6.24 -2.91 -0.02 3.86 16 21 C -0.05 -3.10 4.94 84.86 0.42 -2.68 16 22 N -0.94 -58.85 11.23 21.65 0.24 -58.61 16 23 Si 0.95 47.06 29.58 68.60 2.03 49.09 16 24 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 25 H -0.31 -16.20 7.11 99.48 0.71 -15.49 16 26 H -0.28 -13.76 7.11 99.48 0.71 -13.05 16 27 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.03 1.15 7.67 -2.38 -0.02 1.13 16 29 H 0.06 1.73 7.41 -2.39 -0.02 1.71 16 30 H 0.07 1.57 6.40 -2.39 -0.02 1.56 16 31 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 34 H 0.41 9.28 6.77 -92.71 -0.63 8.65 16 35 H 0.19 1.37 8.09 -2.39 -0.02 1.35 16 36 H 0.13 2.60 8.14 -2.39 -0.02 2.58 16 37 H 0.28 1.96 8.06 -2.91 -0.02 1.94 16 38 H 0.23 5.79 8.06 -2.91 -0.02 5.77 16 39 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 40 H 0.04 2.52 6.14 -2.39 -0.01 2.51 16 41 H 0.24 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -88.39 333.46 2.96 -85.43 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: 0.42 Total: 13.99 kcal Atomic # 6 Polarization: 23.84 SS G_CDS: 8.67 Total: 32.51 kcal Atomic # 7 Polarization: -146.32 SS G_CDS: -8.11 Total: -154.43 kcal Atomic # 8 Polarization: -26.55 SS G_CDS: -0.05 Total: -26.59 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.09 kcal Total: -88.39 2.96 -85.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072052187.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.744 kcal (2) G-P(sol) polarization free energy of solvation -88.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds