Wall clock time and date at job start Tue Mar 31 2020 02:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.47165 * 2 1 4 4 C 1.50700 * 109.46993 * 239.99441 * 2 1 3 5 5 O 1.21273 * 119.99911 * 239.99961 * 4 2 1 6 6 N 1.34780 * 119.99741 * 60.00391 * 4 2 1 7 7 C 1.46496 * 119.99446 * 179.97438 * 6 4 2 8 8 H 1.08999 * 110.89236 * 37.43120 * 7 6 4 9 9 C 1.54906 * 111.00586 * 273.54440 * 7 6 4 10 10 N 1.47431 * 104.83279 * 204.92245 * 9 7 6 11 11 C 1.36937 * 125.64997 * 204.09430 * 10 9 7 12 12 H 1.08005 * 119.99476 * 10.05726 * 11 10 9 13 13 C 1.38809 * 120.00423 * 190.05514 * 11 10 9 14 14 N 1.31614 * 120.00398 * 195.13821 * 13 11 10 15 15 Si 1.86800 * 119.99703 * 15.14195 * 13 11 10 16 16 H 1.48505 * 109.47219 * 54.48887 * 15 13 11 17 17 H 1.48498 * 109.47210 * 294.49091 * 15 13 11 18 18 H 1.48497 * 109.47206 * 174.48993 * 15 13 11 19 19 C 1.47022 * 108.70445 * 24.35113 * 10 9 7 20 20 C 1.54333 * 107.26472 * 358.59142 * 19 10 9 21 21 H 1.09004 * 110.67059 * 96.51772 * 20 19 10 22 22 O 1.42899 * 110.85257 * 219.66924 * 20 19 10 23 23 N 1.46500 * 109.47011 * 119.99830 * 2 1 3 24 24 C 1.36338 * 125.63773 * 59.68732 * 23 2 1 25 25 C 1.34855 * 108.22058 * 179.83005 * 24 23 2 26 26 C 1.40889 * 107.41417 * 0.43190 * 25 24 23 27 27 C 1.34850 * 107.41888 * 359.72983 * 26 25 24 28 28 H 1.08999 * 109.47165 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46835 * 300.00568 * 1 2 3 30 30 H 1.08997 * 109.46965 * 60.00406 * 1 2 3 31 31 H 0.97002 * 119.99967 * 359.97438 * 6 4 2 32 32 H 1.08995 * 110.36638 * 86.08281 * 9 7 6 33 33 H 1.09003 * 110.46174 * 323.79994 * 9 7 6 34 34 H 0.96997 * 119.99844 * 2.98073 * 14 13 11 35 35 H 1.09003 * 109.88013 * 118.12942 * 19 10 9 36 36 H 1.08998 * 109.88605 * 239.29917 * 19 10 9 37 37 H 0.96699 * 113.99739 * 293.69732 * 22 20 19 38 38 H 1.07999 * 125.89167 * 359.96934 * 24 23 2 39 39 H 1.07998 * 126.29628 * 180.16133 * 25 24 23 40 40 H 1.08003 * 126.29070 * 179.73191 * 26 25 24 41 41 H 1.07998 * 125.89240 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7296 -1.6965 -1.1190 6 7 1.7068 -0.2501 -2.4546 7 6 2.1956 -0.9405 -3.6506 8 1 2.2013 -2.0202 -3.5011 9 6 3.6012 -0.4281 -4.0521 10 7 3.7030 -0.6990 -5.4977 11 6 4.8678 -0.8583 -6.1998 12 1 5.8068 -0.9503 -5.6742 13 6 4.8418 -0.9016 -7.5870 14 7 5.8876 -1.3456 -8.2513 15 14 3.3224 -0.3295 -8.5109 16 1 2.9785 1.0526 -8.0905 17 1 2.1869 -1.2366 -8.2059 18 1 3.5938 -0.3498 -9.9707 19 6 2.3468 -0.7636 -6.0619 20 6 1.3558 -0.5554 -4.8972 21 1 1.0398 0.4863 -4.8425 22 8 0.2249 -1.4186 -5.0313 23 7 2.0184 -0.6906 1.1962 24 6 1.7559 -1.9866 1.5280 25 6 2.3800 -2.2586 2.6921 26 6 3.0441 -1.0845 3.0988 27 6 2.8056 -0.1416 2.1647 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.1489 0.5384 -2.5436 32 1 4.3731 -0.9731 -3.5088 33 1 3.6862 0.6415 -3.8598 34 1 6.6598 -1.6829 -7.7710 35 1 2.2172 0.0221 -6.8063 36 1 2.1809 -1.7398 -6.5174 37 1 -0.3331 -1.2199 -5.7957 38 1 1.1540 -2.6772 0.9560 39 1 2.3688 -3.2015 3.2185 40 1 3.6356 -0.9621 3.9941 41 1 3.1740 0.8735 2.1811 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076879226.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:28 Heat of formation + Delta-G solvation = 15.330445 kcal Electronic energy + Delta-G solvation = -23873.428751 eV Core-core repulsion = 20370.085747 eV Total energy + Delta-G solvation = -3503.343005 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.46045 -39.81072 -38.28652 -35.49039 -34.63529 -34.17966 -32.04332 -29.70725 -28.83297 -28.56465 -27.90916 -25.05978 -23.76266 -21.47199 -21.18070 -20.55152 -20.32616 -19.70454 -18.04620 -17.48105 -17.42676 -16.90453 -16.30877 -15.46125 -14.94614 -14.74342 -14.22888 -14.12552 -13.79302 -13.69097 -13.49402 -12.98447 -12.89344 -12.79684 -12.70309 -12.49802 -12.33820 -12.13596 -12.06740 -11.87477 -11.70607 -11.25089 -10.67024 -10.49554 -10.11658 -9.95831 -9.38167 -9.21035 -9.08218 -8.75741 -8.63200 -8.10845 -7.17473 -6.39516 -3.31560 2.15818 2.40547 2.65470 3.10249 3.10819 3.28528 3.37148 3.61246 4.12555 4.24531 4.41941 4.46469 4.52832 4.69361 4.86972 5.07783 5.10806 5.14395 5.14589 5.21320 5.25536 5.38676 5.52242 5.61715 5.64296 5.69449 5.70134 6.07286 6.19911 6.29453 6.31330 6.39285 6.47632 6.57895 7.00369 7.21921 7.23172 7.40010 7.52866 7.65783 8.04528 8.24913 8.95236 9.44477 10.09241 11.11592 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.027393 B = 0.003737 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.927632 B = 7491.719997 C = 8110.347039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.116 3.884 3 H 0.123 0.877 4 C 0.501 3.499 5 O -0.511 6.511 6 N -0.711 5.711 7 C 0.142 3.858 8 H 0.107 0.893 9 C 0.131 3.869 10 N -0.605 5.605 11 C -0.326 4.326 12 H 0.081 0.919 13 C -0.021 4.021 14 N -0.925 5.925 15 Si 1.072 2.928 16 H -0.298 1.298 17 H -0.286 1.286 18 H -0.299 1.299 19 C 0.083 3.917 20 C 0.087 3.913 21 H 0.069 0.931 22 O -0.558 6.558 23 N -0.433 5.433 24 C 0.018 3.982 25 C -0.210 4.210 26 C -0.198 4.198 27 C -0.020 4.020 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.399 0.601 32 H 0.057 0.943 33 H 0.028 0.972 34 H 0.263 0.737 35 H 0.035 0.965 36 H 0.061 0.939 37 H 0.379 0.621 38 H 0.154 0.846 39 H 0.133 0.867 40 H 0.133 0.867 41 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.196 6.157 17.101 23.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.009 3.991 3 H 0.141 0.859 4 C 0.284 3.716 5 O -0.385 6.385 6 N -0.363 5.363 7 C 0.036 3.964 8 H 0.125 0.875 9 C 0.003 3.997 10 N -0.334 5.334 11 C -0.453 4.453 12 H 0.099 0.901 13 C -0.221 4.221 14 N -0.565 5.565 15 Si 0.907 3.093 16 H -0.227 1.227 17 H -0.214 1.214 18 H -0.227 1.227 19 C -0.043 4.043 20 C 0.027 3.973 21 H 0.086 0.914 22 O -0.363 6.363 23 N -0.109 5.109 24 C -0.112 4.112 25 C -0.234 4.234 26 C -0.222 4.222 27 C -0.149 4.149 28 H 0.090 0.910 29 H 0.095 0.905 30 H 0.100 0.900 31 H 0.233 0.767 32 H 0.075 0.925 33 H 0.046 0.954 34 H 0.073 0.927 35 H 0.052 0.948 36 H 0.079 0.921 37 H 0.227 0.773 38 H 0.172 0.828 39 H 0.151 0.849 40 H 0.151 0.849 41 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -15.058 5.538 15.856 22.557 hybrid contribution 0.286 0.548 0.898 1.090 sum -14.772 6.086 16.755 23.151 Atomic orbital electron populations 1.22127 0.91195 1.04291 1.03942 1.21264 0.96780 0.97501 0.83545 0.85938 1.20557 0.81097 0.85378 0.84546 1.90813 1.36239 1.25378 1.86085 1.45806 1.53410 1.31880 1.05199 1.22257 0.93753 0.98785 0.81582 0.87489 1.21865 0.93621 0.97617 0.86571 1.44592 1.00937 1.84897 1.02983 1.20199 0.84857 1.49598 0.90620 0.90105 1.25863 1.04050 0.99314 0.92891 1.70886 1.06836 1.41349 1.37462 0.83809 0.74714 0.75666 0.75158 1.22731 1.21387 1.22689 1.22698 0.86301 1.00337 0.94926 1.23041 0.86191 0.92745 0.95310 0.91369 1.86515 1.39010 1.59030 1.51743 1.43694 1.39905 1.10659 1.16683 1.21652 1.05572 0.85615 0.98336 1.20832 1.04980 0.99230 0.98383 1.20836 1.06384 0.93853 1.01168 1.21758 1.01699 0.99880 0.91544 0.90973 0.90466 0.90045 0.76702 0.92469 0.95404 0.92661 0.94769 0.92075 0.77350 0.82817 0.84948 0.84912 0.82425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.07 9.13 37.16 0.34 -0.73 16 2 C 0.12 1.11 3.36 -69.08 -0.23 0.88 16 3 H 0.12 0.85 8.06 -51.93 -0.42 0.43 16 4 C 0.50 6.75 7.11 -10.98 -0.08 6.68 16 5 O -0.51 -9.45 15.21 5.56 0.08 -9.37 16 6 N -0.71 -8.80 5.12 -51.73 -0.27 -9.07 16 7 C 0.14 2.37 3.04 -65.78 -0.20 2.17 16 8 H 0.11 2.10 7.73 -51.93 -0.40 1.70 16 9 C 0.13 2.66 6.93 -2.53 -0.02 2.64 16 10 N -0.61 -14.73 3.33 -170.06 -0.57 -15.30 16 11 C -0.33 -9.38 10.56 -15.06 -0.16 -9.54 16 12 H 0.08 2.47 8.06 -52.48 -0.42 2.05 16 13 C -0.02 -0.63 5.50 -17.43 -0.10 -0.73 16 14 N -0.92 -29.05 13.71 55.49 0.76 -28.29 16 15 Si 1.07 25.98 24.52 -169.99 -4.17 21.82 16 16 H -0.30 -6.84 6.82 56.52 0.39 -6.45 16 17 H -0.29 -6.24 5.41 56.52 0.31 -5.93 16 18 H -0.30 -7.44 7.11 56.52 0.40 -7.04 16 19 C 0.08 1.72 4.39 -3.06 -0.01 1.71 16 20 C 0.09 1.36 3.94 -24.89 -0.10 1.26 16 21 H 0.07 0.87 7.99 -51.93 -0.42 0.45 16 22 O -0.56 -7.85 13.39 -35.23 -0.47 -8.33 16 23 N -0.43 -5.14 2.40 -111.25 -0.27 -5.41 16 24 C 0.02 0.23 9.57 -16.75 -0.16 0.07 16 25 C -0.21 -2.67 10.86 -39.78 -0.43 -3.10 16 26 C -0.20 -2.37 10.86 -39.78 -0.43 -2.80 16 27 C -0.02 -0.23 11.39 -16.75 -0.19 -0.42 16 28 H 0.07 0.57 7.91 -51.93 -0.41 0.16 16 29 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.40 7.56 -51.93 -0.39 0.00 16 31 H 0.40 3.45 7.93 -40.82 -0.32 3.12 16 32 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.26 8.22 8.73 -40.82 -0.36 7.86 16 35 H 0.04 0.73 3.89 -51.93 -0.20 0.53 16 36 H 0.06 1.37 6.61 -51.93 -0.34 1.02 16 37 H 0.38 3.65 9.12 45.56 0.42 4.07 16 38 H 0.15 1.88 8.06 -52.49 -0.42 1.46 16 39 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 40 H 0.13 1.33 8.06 -52.48 -0.42 0.90 16 41 H 0.16 1.34 8.06 -52.49 -0.42 0.91 16 LS Contribution 333.92 15.07 5.03 5.03 Total: -1.00 -36.77 333.92 -6.77 -43.54 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -5.14 Total: 7.29 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: -1.77 Total: -1.92 kcal Atomic # 7 Polarization: -57.73 SS G_CDS: -0.34 Total: -58.06 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: -0.39 Total: -17.70 kcal Atomic # 14 Polarization: 25.98 SS G_CDS: -4.17 Total: 21.82 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -36.77 -6.77 -43.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076879226.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.872 kcal (2) G-P(sol) polarization free energy of solvation -36.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds