Wall clock time and date at job start Tue Mar 31 2020 02:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.47165 * 2 1 4 4 C 1.50700 * 109.46993 * 239.99441 * 2 1 3 5 5 O 1.21273 * 119.99911 * 239.99961 * 4 2 1 6 6 N 1.34780 * 119.99741 * 60.00391 * 4 2 1 7 7 C 1.46496 * 119.99446 * 179.97438 * 6 4 2 8 8 H 1.08999 * 110.89236 * 37.43120 * 7 6 4 9 9 C 1.54906 * 111.00586 * 273.54440 * 7 6 4 10 10 N 1.47431 * 104.83279 * 204.92245 * 9 7 6 11 11 C 1.36937 * 125.64997 * 204.09430 * 10 9 7 12 12 H 1.08005 * 119.99476 * 10.05726 * 11 10 9 13 13 C 1.38809 * 120.00423 * 190.05514 * 11 10 9 14 14 N 1.31614 * 120.00398 * 195.13821 * 13 11 10 15 15 Si 1.86800 * 119.99703 * 15.14195 * 13 11 10 16 16 H 1.48505 * 109.47219 * 54.48887 * 15 13 11 17 17 H 1.48498 * 109.47210 * 294.49091 * 15 13 11 18 18 H 1.48497 * 109.47206 * 174.48993 * 15 13 11 19 19 C 1.47022 * 108.70445 * 24.35113 * 10 9 7 20 20 C 1.54333 * 107.26472 * 358.59142 * 19 10 9 21 21 H 1.09004 * 110.67059 * 96.51772 * 20 19 10 22 22 O 1.42899 * 110.85257 * 219.66924 * 20 19 10 23 23 N 1.46500 * 109.47011 * 119.99830 * 2 1 3 24 24 C 1.36338 * 125.63773 * 59.68732 * 23 2 1 25 25 C 1.34855 * 108.22058 * 179.83005 * 24 23 2 26 26 C 1.40889 * 107.41417 * 0.43190 * 25 24 23 27 27 C 1.34850 * 107.41888 * 359.72983 * 26 25 24 28 28 H 1.08999 * 109.47165 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46835 * 300.00568 * 1 2 3 30 30 H 1.08997 * 109.46965 * 60.00406 * 1 2 3 31 31 H 0.97002 * 119.99967 * 359.97438 * 6 4 2 32 32 H 1.08995 * 110.36638 * 86.08281 * 9 7 6 33 33 H 1.09003 * 110.46174 * 323.79994 * 9 7 6 34 34 H 0.96997 * 119.99844 * 2.98073 * 14 13 11 35 35 H 1.09003 * 109.88013 * 118.12942 * 19 10 9 36 36 H 1.08998 * 109.88605 * 239.29917 * 19 10 9 37 37 H 0.96699 * 113.99739 * 293.69732 * 22 20 19 38 38 H 1.07999 * 125.89167 * 359.96934 * 24 23 2 39 39 H 1.07998 * 126.29628 * 180.16133 * 25 24 23 40 40 H 1.08003 * 126.29070 * 179.73191 * 26 25 24 41 41 H 1.07998 * 125.89240 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7296 -1.6965 -1.1190 6 7 1.7068 -0.2501 -2.4546 7 6 2.1956 -0.9405 -3.6506 8 1 2.2013 -2.0202 -3.5011 9 6 3.6012 -0.4281 -4.0521 10 7 3.7030 -0.6990 -5.4977 11 6 4.8678 -0.8583 -6.1998 12 1 5.8068 -0.9503 -5.6742 13 6 4.8418 -0.9016 -7.5870 14 7 5.8876 -1.3456 -8.2513 15 14 3.3224 -0.3295 -8.5109 16 1 2.9785 1.0526 -8.0905 17 1 2.1869 -1.2366 -8.2059 18 1 3.5938 -0.3498 -9.9707 19 6 2.3468 -0.7636 -6.0619 20 6 1.3558 -0.5554 -4.8972 21 1 1.0398 0.4863 -4.8425 22 8 0.2249 -1.4186 -5.0313 23 7 2.0184 -0.6906 1.1962 24 6 1.7559 -1.9866 1.5280 25 6 2.3800 -2.2586 2.6921 26 6 3.0441 -1.0845 3.0988 27 6 2.8056 -0.1416 2.1647 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.1489 0.5384 -2.5436 32 1 4.3731 -0.9731 -3.5088 33 1 3.6862 0.6415 -3.8598 34 1 6.6598 -1.6829 -7.7710 35 1 2.2172 0.0221 -6.8063 36 1 2.1809 -1.7398 -6.5174 37 1 -0.3331 -1.2199 -5.7957 38 1 1.1540 -2.6772 0.9560 39 1 2.3688 -3.2015 3.2185 40 1 3.6356 -0.9621 3.9941 41 1 3.1740 0.8735 2.1811 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076879226.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:28 Heat of formation + Delta-G solvation = -15.271283 kcal Electronic energy + Delta-G solvation = -23874.755742 eV Core-core repulsion = 20370.085747 eV Total energy + Delta-G solvation = -3504.669995 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.36359 -41.00100 -39.62295 -36.87653 -35.84139 -35.23065 -34.01594 -30.86209 -30.03074 -29.62175 -29.35081 -26.31214 -25.15861 -22.90630 -22.52644 -21.84063 -21.35703 -20.66184 -19.79344 -18.78863 -18.56735 -17.93930 -17.67923 -16.70011 -16.27496 -16.04879 -15.65616 -15.39192 -14.98993 -14.66853 -14.57581 -14.45939 -14.42223 -14.32926 -13.62862 -13.41018 -13.40630 -13.25239 -13.08946 -13.03328 -12.96622 -12.59972 -12.29884 -12.12994 -11.52315 -11.31545 -11.18717 -11.04903 -10.68126 -10.32575 -9.53797 -9.21674 -9.01574 -8.74384 -5.57614 1.21960 1.35500 1.37329 1.49015 1.70245 1.79441 2.14993 2.18162 2.53835 2.87073 3.05292 3.26337 3.36380 3.57065 3.76507 3.80094 3.82610 3.93682 4.11882 4.16389 4.34362 4.38031 4.53505 4.57430 4.64390 4.69441 4.75447 4.79368 4.86111 4.89070 5.10484 5.24850 5.39758 5.42992 5.44326 5.99154 6.10274 6.27321 6.33269 6.53181 6.72097 6.80859 7.06407 7.31507 7.95242 8.78446 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.027393 B = 0.003737 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.927632 B = 7491.719997 C = 8110.347039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.121 3.879 3 H 0.160 0.840 4 C 0.498 3.502 5 O -0.570 6.570 6 N -0.690 5.690 7 C 0.155 3.845 8 H 0.072 0.928 9 C 0.130 3.870 10 N -0.627 5.627 11 C -0.323 4.323 12 H 0.038 0.962 13 C -0.081 4.081 14 N -0.960 5.960 15 Si 1.114 2.886 16 H -0.268 1.268 17 H -0.245 1.245 18 H -0.312 1.312 19 C 0.070 3.930 20 C 0.111 3.889 21 H 0.119 0.881 22 O -0.563 6.563 23 N -0.438 5.438 24 C -0.004 4.004 25 C -0.229 4.229 26 C -0.219 4.219 27 C -0.020 4.020 28 H 0.055 0.945 29 H 0.092 0.908 30 H 0.109 0.891 31 H 0.423 0.577 32 H 0.020 0.980 33 H 0.050 0.950 34 H 0.246 0.754 35 H 0.048 0.952 36 H 0.042 0.958 37 H 0.403 0.597 38 H 0.151 0.849 39 H 0.138 0.862 40 H 0.147 0.853 41 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.052 9.061 17.746 27.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.015 3.985 3 H 0.177 0.823 4 C 0.284 3.716 5 O -0.447 6.447 6 N -0.344 5.344 7 C 0.048 3.952 8 H 0.090 0.910 9 C 0.003 3.997 10 N -0.357 5.357 11 C -0.451 4.451 12 H 0.056 0.944 13 C -0.274 4.274 14 N -0.603 5.603 15 Si 0.939 3.061 16 H -0.195 1.195 17 H -0.170 1.170 18 H -0.241 1.241 19 C -0.055 4.055 20 C 0.051 3.949 21 H 0.136 0.864 22 O -0.371 6.371 23 N -0.115 5.115 24 C -0.134 4.134 25 C -0.253 4.253 26 C -0.244 4.244 27 C -0.149 4.149 28 H 0.075 0.925 29 H 0.111 0.889 30 H 0.128 0.872 31 H 0.262 0.738 32 H 0.038 0.962 33 H 0.068 0.932 34 H 0.054 0.946 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.254 0.746 38 H 0.168 0.832 39 H 0.156 0.844 40 H 0.165 0.835 41 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -18.991 8.485 16.548 26.580 hybrid contribution 1.592 -0.426 0.798 1.830 sum -17.399 8.059 17.346 25.857 Atomic orbital electron populations 1.22160 0.88636 1.03992 1.06117 1.21540 0.98568 0.97982 0.80421 0.82274 1.21383 0.79821 0.84627 0.85767 1.90805 1.38886 1.28118 1.86930 1.45513 1.53084 1.32239 1.03570 1.21687 0.92288 0.97146 0.84108 0.91013 1.21941 0.95242 0.98279 0.84210 1.44575 1.01263 1.85236 1.04578 1.20041 0.85557 1.48426 0.91121 0.94393 1.27461 1.06538 0.99041 0.94310 1.71016 1.07519 1.44069 1.37730 0.83409 0.72396 0.77443 0.72853 1.19500 1.17016 1.24128 1.22946 0.85428 0.99609 0.97473 1.22822 0.85317 0.95338 0.91411 0.86390 1.86492 1.38333 1.59138 1.53148 1.43920 1.39838 1.10375 1.17322 1.21740 1.06325 0.86616 0.98675 1.21127 1.05338 1.00066 0.98762 1.21160 1.07017 0.93866 1.02329 1.22320 1.00611 1.01054 0.90897 0.92541 0.88904 0.87199 0.73757 0.96157 0.93219 0.94565 0.93501 0.93996 0.74584 0.83193 0.84408 0.83492 0.79311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.13 71.98 0.66 -0.79 16 2 C 0.12 1.90 3.36 44.25 0.15 2.05 16 3 H 0.16 1.38 8.06 -2.39 -0.02 1.36 16 4 C 0.50 12.47 7.11 87.66 0.62 13.10 16 5 O -0.57 -21.32 15.21 -3.01 -0.05 -21.37 16 6 N -0.69 -14.75 5.12 -435.97 -2.23 -16.98 16 7 C 0.15 4.88 3.04 46.39 0.14 5.02 16 8 H 0.07 2.82 7.73 -2.39 -0.02 2.81 16 9 C 0.13 5.25 6.93 86.85 0.60 5.85 16 10 N -0.63 -30.43 3.33 -691.96 -2.30 -32.74 16 11 C -0.32 -19.29 10.56 84.03 0.89 -18.40 16 12 H 0.04 2.50 8.06 -2.91 -0.02 2.48 16 13 C -0.08 -4.88 5.50 84.86 0.47 -4.41 16 14 N -0.96 -62.81 13.71 21.65 0.30 -62.52 16 15 Si 1.11 51.03 24.52 68.60 1.68 52.71 16 16 H -0.27 -10.94 6.82 99.48 0.68 -10.26 16 17 H -0.25 -9.61 5.41 99.48 0.54 -9.07 16 18 H -0.31 -14.93 7.11 99.48 0.71 -14.22 16 19 C 0.07 2.71 4.39 86.73 0.38 3.09 16 20 C 0.11 2.96 3.94 31.79 0.13 3.08 16 21 H 0.12 2.11 7.99 -2.39 -0.02 2.09 16 22 O -0.56 -13.15 13.39 -148.98 -2.00 -15.15 16 23 N -0.44 -9.63 2.40 -505.89 -1.21 -10.85 16 24 C 0.00 -0.09 9.57 83.22 0.80 0.70 16 25 C -0.23 -5.84 10.86 22.14 0.24 -5.60 16 26 C -0.22 -5.05 10.86 22.14 0.24 -4.81 16 27 C -0.02 -0.42 11.39 83.21 0.95 0.53 16 28 H 0.06 0.75 7.91 -2.39 -0.02 0.73 16 29 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16 30 H 0.11 0.43 7.56 -2.39 -0.02 0.41 16 31 H 0.42 4.89 7.93 -92.71 -0.74 4.16 16 32 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.25 16.32 8.73 -92.71 -0.81 15.51 16 35 H 0.05 1.75 3.89 -2.39 -0.01 1.74 16 36 H 0.04 1.78 6.61 -2.39 -0.02 1.76 16 37 H 0.40 5.43 9.12 -74.06 -0.68 4.76 16 38 H 0.15 3.81 8.06 -2.91 -0.02 3.79 16 39 H 0.14 3.14 8.06 -2.91 -0.02 3.12 16 40 H 0.15 2.79 8.06 -2.91 -0.02 2.76 16 41 H 0.19 2.51 8.06 -2.91 -0.02 2.49 16 Total: -1.00 -87.56 333.92 -0.15 -87.71 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: -0.59 Total: 19.76 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: 6.26 Total: -0.59 kcal Atomic # 7 Polarization: -117.62 SS G_CDS: -5.45 Total: -123.08 kcal Atomic # 8 Polarization: -34.47 SS G_CDS: -2.04 Total: -36.51 kcal Atomic # 14 Polarization: 51.03 SS G_CDS: 1.68 Total: 52.71 kcal Total: -87.56 -0.15 -87.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076879226.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.436 kcal (2) G-P(sol) polarization free energy of solvation -87.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds