Wall clock time and date at job start Tue Mar 31 2020 02:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08992 * 109.47077 * 2 1 4 4 C 1.50698 * 109.46886 * 120.00285 * 2 1 3 5 5 O 1.21280 * 120.00314 * 119.99828 * 4 2 1 6 6 N 1.34782 * 119.99959 * 299.99913 * 4 2 1 7 7 C 1.46501 * 120.00377 * 180.02562 * 6 4 2 8 8 H 1.09003 * 110.88194 * 37.42326 * 7 6 4 9 9 C 1.54905 * 111.00194 * 273.54660 * 7 6 4 10 10 N 1.47425 * 104.83192 * 204.91427 * 9 7 6 11 11 C 1.36936 * 125.64932 * 204.08983 * 10 9 7 12 12 H 1.07997 * 120.00015 * 26.01017 * 11 10 9 13 13 C 1.38810 * 119.99782 * 206.00870 * 11 10 9 14 14 N 1.31628 * 119.99789 * 214.47366 * 13 11 10 15 15 Si 1.86792 * 120.00337 * 34.48312 * 13 11 10 16 16 H 1.48500 * 109.47151 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47142 * 239.99823 * 15 13 11 18 18 H 1.48508 * 109.47417 * 119.99705 * 15 13 11 19 19 C 1.47024 * 108.70208 * 24.35539 * 10 9 7 20 20 C 1.54338 * 107.26406 * 358.58720 * 19 10 9 21 21 H 1.08995 * 110.66632 * 96.52318 * 20 19 10 22 22 O 1.42902 * 110.84519 * 219.67601 * 20 19 10 23 23 N 1.46501 * 109.47079 * 240.00027 * 2 1 3 24 24 C 1.36348 * 125.63192 * 299.69430 * 23 2 1 25 25 C 1.34851 * 108.21231 * 179.83507 * 24 23 2 26 26 C 1.40888 * 107.41868 * 0.42239 * 25 24 23 27 27 C 1.34845 * 107.42007 * 359.73528 * 26 25 24 28 28 H 1.08997 * 109.47376 * 300.00180 * 1 2 3 29 29 H 1.08998 * 109.46619 * 60.00085 * 1 2 3 30 30 H 1.09000 * 109.47115 * 179.97438 * 1 2 3 31 31 H 0.97002 * 119.99768 * 0.02562 * 6 4 2 32 32 H 1.08996 * 110.37003 * 86.07361 * 9 7 6 33 33 H 1.09008 * 110.46088 * 323.79726 * 9 7 6 34 34 H 0.97000 * 119.99944 * 5.09675 * 14 13 11 35 35 H 1.08994 * 109.88192 * 118.13329 * 19 10 9 36 36 H 1.08998 * 109.88047 * 239.29799 * 19 10 9 37 37 H 0.96698 * 114.00008 * 293.68610 * 22 20 19 38 38 H 1.07999 * 125.89360 * 359.96103 * 24 23 2 39 39 H 1.07999 * 126.28981 * 180.16628 * 25 24 23 40 40 H 1.08003 * 126.29110 * 179.73898 * 26 25 24 41 41 H 1.07997 * 125.89696 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7295 -1.6966 1.1192 6 7 1.7067 -0.2500 2.4546 7 6 2.1954 -0.9403 3.6508 8 1 3.2116 -1.3050 3.5010 9 6 1.2446 -2.0953 4.0527 10 7 1.4664 -2.2811 5.4983 11 6 1.2292 -3.4324 6.2006 12 1 1.2590 -4.3877 5.6976 13 6 0.9504 -3.3717 7.5591 14 7 1.3689 -4.3286 8.3602 15 14 -0.0189 -1.9323 8.2502 16 1 -0.3701 -0.9983 7.1504 17 1 0.8048 -1.2200 9.2598 18 1 -1.2617 -2.4339 8.8900 19 6 1.9786 -1.0236 6.0621 20 6 2.1118 -0.0200 4.8971 21 1 1.2346 0.6246 4.8424 22 8 3.3021 0.7593 5.0309 23 7 2.0184 -0.6906 -1.1962 24 6 1.7656 -1.9903 -1.5219 25 6 2.3800 -2.2587 -2.6919 26 6 3.0442 -1.0847 -3.0986 27 6 2.8055 -0.1417 -2.1647 28 1 -0.3634 0.5138 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.1487 0.5385 2.5436 32 1 1.5015 -3.0047 3.5095 33 1 0.2076 -1.8196 3.8604 34 1 1.9344 -5.0372 8.0153 35 1 1.2810 -0.6399 6.8065 36 1 2.9545 -1.1918 6.5174 37 1 3.3005 1.3518 5.7950 38 1 1.1736 -2.6843 -0.9437 39 1 2.3687 -3.2017 -3.2182 40 1 3.6357 -0.9623 -3.9939 41 1 3.1740 0.8733 -2.1811 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076879227.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:30 Heat of formation + Delta-G solvation = -21.779064 kcal Electronic energy + Delta-G solvation = -23860.858555 eV Core-core repulsion = 20355.906361 eV Total energy + Delta-G solvation = -3504.952194 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.36012 -40.95771 -39.53869 -36.82320 -35.80998 -35.21723 -34.03041 -30.81957 -30.00482 -29.58271 -29.14884 -26.26492 -25.16925 -22.64330 -22.50123 -21.79603 -21.36144 -20.65089 -19.75953 -18.78732 -18.55286 -17.87221 -17.52948 -16.56515 -16.28580 -16.13303 -15.62290 -15.20201 -15.02955 -14.73182 -14.54895 -14.46566 -14.39460 -14.28099 -13.57576 -13.34930 -13.30290 -13.21583 -13.04703 -12.96987 -12.95822 -12.71919 -12.61439 -12.02743 -11.71945 -11.27716 -11.23174 -10.96660 -10.65197 -10.29993 -9.53934 -9.16712 -9.01377 -8.73681 -5.57269 1.22702 1.37806 1.42250 1.53820 1.71301 1.79807 2.15782 2.18319 2.53246 2.83183 2.99231 3.35727 3.36963 3.68104 3.76585 3.80025 3.85487 3.96878 4.12369 4.24904 4.38479 4.38976 4.56875 4.63896 4.69736 4.75224 4.78144 4.80241 4.89420 4.94962 5.10362 5.28614 5.39730 5.43602 5.63904 6.06085 6.10564 6.27205 6.34001 6.53988 6.71948 6.81600 7.07343 7.37900 8.07625 8.66809 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.026396 B = 0.003713 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.508937 B = 7540.156198 C = 7913.034469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.123 3.877 3 H 0.164 0.836 4 C 0.498 3.502 5 O -0.571 6.571 6 N -0.691 5.691 7 C 0.155 3.845 8 H 0.068 0.932 9 C 0.126 3.874 10 N -0.617 5.617 11 C -0.349 4.349 12 H 0.024 0.976 13 C -0.051 4.051 14 N -0.930 5.930 15 Si 1.090 2.910 16 H -0.243 1.243 17 H -0.279 1.279 18 H -0.295 1.295 19 C 0.086 3.914 20 C 0.109 3.891 21 H 0.115 0.885 22 O -0.565 6.565 23 N -0.438 5.438 24 C -0.006 4.006 25 C -0.228 4.228 26 C -0.219 4.219 27 C -0.017 4.017 28 H 0.109 0.891 29 H 0.094 0.906 30 H 0.052 0.948 31 H 0.423 0.577 32 H 0.018 0.982 33 H 0.048 0.952 34 H 0.252 0.748 35 H 0.047 0.953 36 H 0.027 0.973 37 H 0.402 0.598 38 H 0.145 0.855 39 H 0.136 0.864 40 H 0.149 0.851 41 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.229 19.884 -17.555 26.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.017 3.983 3 H 0.181 0.819 4 C 0.283 3.717 5 O -0.448 6.448 6 N -0.344 5.344 7 C 0.048 3.952 8 H 0.086 0.914 9 C -0.001 4.001 10 N -0.345 5.345 11 C -0.477 4.477 12 H 0.041 0.959 13 C -0.249 4.249 14 N -0.568 5.568 15 Si 0.913 3.087 16 H -0.167 1.167 17 H -0.206 1.206 18 H -0.223 1.223 19 C -0.039 4.039 20 C 0.049 3.951 21 H 0.133 0.867 22 O -0.374 6.374 23 N -0.114 5.114 24 C -0.136 4.136 25 C -0.252 4.252 26 C -0.243 4.243 27 C -0.146 4.146 28 H 0.128 0.872 29 H 0.113 0.887 30 H 0.071 0.929 31 H 0.262 0.738 32 H 0.036 0.964 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.045 0.955 37 H 0.253 0.747 38 H 0.163 0.837 39 H 0.154 0.846 40 H 0.167 0.833 41 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -3.361 19.554 -16.471 25.786 hybrid contribution 0.727 -1.573 -0.502 1.804 sum -2.634 17.981 -16.973 24.866 Atomic orbital electron populations 1.22178 0.88976 1.03856 1.06181 1.21524 0.98319 0.98091 0.80400 0.81918 1.21395 0.79844 0.84630 0.85784 1.90803 1.39099 1.27987 1.86941 1.45529 1.53272 1.31989 1.03637 1.21670 0.97452 0.92061 0.84036 0.91400 1.21979 0.97030 0.95756 0.85318 1.44447 1.75667 1.10121 1.04301 1.19622 1.50281 0.84317 0.93489 0.95860 1.27494 0.99254 1.05259 0.92882 1.70983 1.33888 1.15655 1.36307 0.83614 0.75941 0.73560 0.75586 1.16737 1.20559 1.22254 1.22540 0.97540 0.87007 0.96794 1.22825 0.89232 0.91187 0.91867 0.86730 1.86489 1.39362 1.58346 1.53158 1.43931 1.40017 1.10046 1.17441 1.21701 1.06625 0.86599 0.98667 1.21119 1.05503 1.00164 0.98461 1.21157 1.06984 0.93771 1.02396 1.22344 1.00282 1.01109 0.90839 0.87228 0.88743 0.92878 0.73822 0.96364 0.93403 0.93897 0.93523 0.95518 0.74676 0.83724 0.84571 0.83315 0.78973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.14 71.98 0.66 -1.04 16 2 C 0.12 1.98 3.36 44.25 0.15 2.13 16 3 H 0.16 1.34 8.06 -2.39 -0.02 1.32 16 4 C 0.50 12.79 7.11 87.66 0.62 13.42 16 5 O -0.57 -21.74 15.19 -3.03 -0.05 -21.78 16 6 N -0.69 -15.36 5.12 -435.97 -2.23 -17.59 16 7 C 0.15 5.04 3.04 46.38 0.14 5.18 16 8 H 0.07 2.76 7.73 -2.39 -0.02 2.74 16 9 C 0.13 5.13 6.92 86.85 0.60 5.73 16 10 N -0.62 -30.06 3.06 -691.97 -2.12 -32.18 16 11 C -0.35 -20.66 10.24 84.03 0.86 -19.80 16 12 H 0.02 1.55 8.06 -2.91 -0.02 1.53 16 13 C -0.05 -3.00 5.29 84.86 0.45 -2.55 16 14 N -0.93 -58.92 13.70 21.65 0.30 -58.62 16 15 Si 1.09 49.36 26.22 68.60 1.80 51.16 16 16 H -0.24 -9.41 6.16 99.48 0.61 -8.79 16 17 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 18 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 19 C 0.09 3.41 5.81 86.73 0.50 3.92 16 20 C 0.11 3.02 3.95 31.79 0.13 3.15 16 21 H 0.12 2.21 7.99 -2.39 -0.02 2.19 16 22 O -0.57 -13.93 13.39 -148.98 -2.00 -15.93 16 23 N -0.44 -9.77 2.40 -505.91 -1.22 -10.98 16 24 C -0.01 -0.16 9.56 83.21 0.80 0.63 16 25 C -0.23 -5.98 10.86 22.14 0.24 -5.74 16 26 C -0.22 -4.98 10.86 22.14 0.24 -4.74 16 27 C -0.02 -0.35 11.39 83.21 0.95 0.60 16 28 H 0.11 0.60 7.56 -2.39 -0.02 0.58 16 29 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.05 0.83 7.92 -2.39 -0.02 0.81 16 31 H 0.42 5.27 7.93 -92.71 -0.74 4.54 16 32 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 34 H 0.25 16.31 8.73 -92.71 -0.81 15.50 16 35 H 0.05 1.77 3.83 -2.39 -0.01 1.76 16 36 H 0.03 1.17 8.05 -2.39 -0.02 1.15 16 37 H 0.40 5.89 9.12 -74.06 -0.68 5.21 16 38 H 0.15 4.04 8.06 -2.91 -0.02 4.02 16 39 H 0.14 3.23 8.06 -2.91 -0.02 3.21 16 40 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 41 H 0.19 2.32 8.06 -2.91 -0.02 2.30 16 Total: -1.00 -85.24 338.65 0.33 -84.91 By element: Atomic # 1 Polarization: 20.62 SS G_CDS: -0.49 Total: 20.13 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: 6.34 Total: 0.89 kcal Atomic # 7 Polarization: -114.11 SS G_CDS: -5.27 Total: -119.38 kcal Atomic # 8 Polarization: -35.67 SS G_CDS: -2.04 Total: -37.71 kcal Atomic # 14 Polarization: 49.36 SS G_CDS: 1.80 Total: 51.16 kcal Total: -85.24 0.33 -84.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076879227.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.127 kcal (2) G-P(sol) polarization free energy of solvation -85.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds