Wall clock time and date at job start Tue Mar 31 2020 02:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46496 * 109.47629 * 2 1 4 4 C 1.35533 * 125.67755 * 265.41285 * 3 2 1 5 5 C 1.35454 * 108.87065 * 179.97438 * 4 3 2 6 6 C 1.39837 * 107.86770 * 359.97438 * 5 4 3 7 7 C 1.37655 * 125.67468 * 85.37856 * 3 2 1 8 8 C 1.46672 * 126.23855 * 0.02987 * 7 3 2 9 9 O 1.21697 * 119.99915 * 354.70528 * 8 7 3 10 10 N 1.34773 * 120.00458 * 174.70553 * 8 7 3 11 11 C 1.46498 * 120.00141 * 185.02348 * 10 8 7 12 12 H 1.09000 * 110.89027 * 31.11761 * 11 10 8 13 13 C 1.54908 * 111.00221 * 267.19412 * 11 10 8 14 14 N 1.47423 * 104.83465 * 204.91719 * 13 11 10 15 15 C 1.36940 * 125.65076 * 204.08553 * 14 13 11 16 16 H 1.07994 * 119.99827 * 0.02741 * 15 14 13 17 17 C 1.38811 * 119.99845 * 180.02562 * 15 14 13 18 18 N 1.31619 * 120.00452 * 359.97438 * 17 15 14 19 19 Si 1.86808 * 119.99838 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46836 * 59.99778 * 19 17 15 21 21 H 1.48501 * 109.47139 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47057 * 299.99902 * 19 17 15 23 23 C 1.47031 * 108.70370 * 24.12800 * 14 13 11 24 24 C 1.54329 * 107.26553 * 358.94108 * 23 14 13 25 25 H 1.09003 * 110.71309 * 96.17410 * 24 23 14 26 26 O 1.42896 * 110.86937 * 219.37054 * 24 23 14 27 27 H 1.09000 * 109.47131 * 59.99701 * 1 2 3 28 28 H 1.09002 * 109.47273 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47332 * 300.00223 * 1 2 3 30 30 H 1.08999 * 109.47332 * 239.99777 * 2 1 3 31 31 H 1.09009 * 109.46903 * 120.00183 * 2 1 3 32 32 H 1.07995 * 125.56749 * 0.24106 * 4 3 2 33 33 H 1.08005 * 126.06994 * 180.02562 * 5 4 3 34 34 H 1.07997 * 126.46296 * 180.02562 * 6 5 4 35 35 H 0.97002 * 120.00158 * 5.01990 * 10 8 7 36 36 H 1.08997 * 110.36800 * 323.75613 * 13 11 10 37 37 H 1.08997 * 110.36902 * 86.08117 * 13 11 10 38 38 H 0.96995 * 120.00493 * 180.02562 * 18 17 15 39 39 H 1.09002 * 109.88353 * 239.52567 * 23 14 13 40 40 H 1.08993 * 110.00856 * 118.42801 * 23 14 13 41 41 H 0.96703 * 114.00471 * 293.61588 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3650 2.0970 -1.0974 5 6 2.7673 3.3301 -0.7071 6 6 2.6696 3.3921 0.6865 7 6 2.2012 2.1680 1.1146 8 6 1.9440 1.7760 2.5044 9 8 1.4384 0.6962 2.7484 10 7 2.2676 2.6114 3.5112 11 6 2.1134 2.1770 4.9017 12 1 2.2699 1.1021 4.9928 13 6 0.7280 2.5865 5.4609 14 7 0.9187 2.6661 6.9206 15 6 -0.0666 2.5346 7.8626 16 1 -1.0865 2.3558 7.5558 17 6 0.2457 2.6312 9.2116 18 7 1.4888 2.8487 9.5855 19 14 -1.0984 2.4525 10.4966 20 1 -1.7301 1.1146 10.3693 21 1 -0.5094 2.5956 11.8523 22 1 -2.1243 3.5060 10.2895 23 6 2.3417 2.9111 7.1976 24 6 3.0711 2.9597 5.8384 25 1 3.1863 3.9892 5.4993 26 8 4.3417 2.3108 5.9191 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 2.3229 1.7436 -2.1170 33 1 3.1030 4.1248 -1.3569 34 1 2.9149 4.2391 1.3101 35 1 2.6028 3.5003 3.3151 36 1 0.4304 3.5570 5.0638 37 1 -0.0183 1.8307 5.2166 38 1 1.7071 2.9158 10.5282 39 1 2.7456 2.1021 7.8063 40 1 2.4623 3.8616 7.7172 41 1 4.9773 2.7604 6.4926 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078180943.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:44 Heat of formation + Delta-G solvation = -5.220662 kcal Electronic energy + Delta-G solvation = -23770.196541 eV Core-core repulsion = 20265.962373 eV Total energy + Delta-G solvation = -3504.234167 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.44298 -39.22638 -37.63816 -35.06960 -34.58035 -33.71306 -31.75284 -29.65099 -29.39460 -28.14545 -26.88532 -24.49973 -23.68589 -22.47737 -20.79225 -20.51569 -20.13248 -19.37053 -17.90783 -16.98829 -16.77920 -15.82055 -15.58525 -15.33278 -14.76895 -14.47695 -14.17286 -14.00959 -13.93870 -13.70652 -13.17630 -12.67114 -12.56724 -12.47541 -12.42177 -12.29387 -12.03606 -12.03260 -11.52870 -11.29325 -11.23052 -10.89419 -10.79140 -10.19081 -9.91009 -9.85321 -9.82830 -9.32549 -8.86092 -8.82452 -8.63115 -8.24181 -6.90713 -5.75442 -3.10033 1.50703 2.60541 2.68652 3.40171 3.43675 3.44931 3.47166 3.52755 4.44768 4.58158 4.63477 4.81556 4.89199 4.93352 5.15147 5.20925 5.27203 5.30572 5.44756 5.55679 5.59202 5.67014 5.68620 5.82791 5.97380 6.01901 6.06776 6.12745 6.14622 6.53114 6.61892 6.67603 6.91211 6.94260 7.15197 7.33503 7.47180 7.70048 7.75636 8.12891 8.18140 8.39782 9.15822 9.75901 10.39043 11.36245 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.024482 B = 0.003646 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.440128 B = 7678.396626 C = 8315.927589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.097 3.903 3 N -0.407 5.407 4 C 0.009 3.991 5 C -0.209 4.209 6 C -0.145 4.145 7 C -0.043 4.043 8 C 0.586 3.414 9 O -0.546 6.546 10 N -0.702 5.702 11 C 0.142 3.858 12 H 0.105 0.895 13 C 0.130 3.870 14 N -0.600 5.600 15 C -0.230 4.230 16 H 0.080 0.920 17 C -0.007 4.007 18 N -0.924 5.924 19 Si 0.915 3.085 20 H -0.284 1.284 21 H -0.290 1.290 22 H -0.285 1.285 23 C 0.154 3.846 24 C 0.068 3.932 25 H 0.058 0.942 26 O -0.563 6.563 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.105 0.895 32 H 0.165 0.835 33 H 0.140 0.860 34 H 0.142 0.858 35 H 0.399 0.601 36 H 0.024 0.976 37 H 0.050 0.950 38 H 0.254 0.746 39 H 0.061 0.939 40 H 0.049 0.951 41 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.383 0.428 -20.073 20.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.024 4.024 3 N -0.080 5.080 4 C -0.126 4.126 5 C -0.233 4.233 6 C -0.172 4.172 7 C -0.156 4.156 8 C 0.374 3.626 9 O -0.425 6.425 10 N -0.352 5.352 11 C 0.037 3.963 12 H 0.123 0.877 13 C 0.003 3.997 14 N -0.328 5.328 15 C -0.358 4.358 16 H 0.098 0.902 17 C -0.203 4.203 18 N -0.572 5.572 19 Si 0.745 3.255 20 H -0.211 1.211 21 H -0.215 1.215 22 H -0.211 1.211 23 C 0.028 3.972 24 C 0.008 3.992 25 H 0.076 0.924 26 O -0.368 6.368 27 H 0.074 0.926 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.104 0.896 31 H 0.123 0.877 32 H 0.183 0.817 33 H 0.158 0.842 34 H 0.160 0.840 35 H 0.234 0.766 36 H 0.042 0.958 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.079 0.921 40 H 0.067 0.933 41 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 3.594 -1.163 -20.012 20.366 hybrid contribution -0.209 0.865 0.925 1.284 sum 3.385 -0.299 -19.087 19.387 Atomic orbital electron populations 1.22065 0.93910 1.03061 1.02992 1.22023 0.96160 0.79548 1.04662 1.44085 1.46985 1.11754 1.05194 1.21962 1.05978 0.93145 0.91563 1.20785 1.09981 0.97412 0.95115 1.21348 1.04270 0.95999 0.95545 1.20165 1.14326 0.93203 0.87952 1.16973 0.78093 0.84235 0.83343 1.90798 1.43928 1.22851 1.84926 1.45569 1.66411 1.17500 1.05719 1.22267 0.95764 1.00673 0.77609 0.87703 1.21847 0.93802 0.98178 0.85879 1.44236 1.04325 1.85021 0.99194 1.19047 0.88364 1.42604 0.85742 0.90196 1.24808 0.96740 1.01814 0.96926 1.69908 1.16351 1.55664 1.15241 0.86148 0.80611 0.78035 0.80667 1.21050 1.21549 1.21106 1.21814 0.83725 1.01628 0.89994 1.23467 0.83637 0.93857 0.98215 0.92427 1.86466 1.23859 1.55269 1.71191 0.92583 0.90779 0.91039 0.89597 0.87713 0.81744 0.84207 0.83991 0.76636 0.95790 0.93125 0.93600 0.92109 0.93273 0.77659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 10.17 37.16 0.38 -1.29 16 2 C 0.10 1.02 6.10 -4.04 -0.02 1.00 16 3 N -0.41 -4.91 2.76 -112.87 -0.31 -5.22 16 4 C 0.01 0.09 11.37 -16.91 -0.19 -0.11 16 5 C -0.21 -2.14 10.81 -39.98 -0.43 -2.57 16 6 C -0.15 -1.71 10.36 -39.11 -0.41 -2.11 16 7 C -0.04 -0.59 6.89 -81.98 -0.56 -1.16 16 8 C 0.59 9.67 7.77 -12.86 -0.10 9.57 16 9 O -0.55 -10.52 13.98 5.19 0.07 -10.44 16 10 N -0.70 -11.04 5.18 -53.04 -0.27 -11.31 16 11 C 0.14 2.72 3.11 -65.78 -0.20 2.52 16 12 H 0.10 2.30 7.61 -51.93 -0.40 1.90 16 13 C 0.13 2.82 6.93 -2.53 -0.02 2.81 16 14 N -0.60 -15.45 3.40 -170.07 -0.58 -16.03 16 15 C -0.23 -6.45 10.28 -15.06 -0.15 -6.61 16 16 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 17 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 18 N -0.92 -26.81 10.31 55.49 0.57 -26.23 16 19 Si 0.92 22.13 29.55 -169.99 -5.02 17.11 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 C 0.15 3.66 5.15 -3.06 -0.02 3.65 16 24 C 0.07 1.27 3.97 -24.89 -0.10 1.17 16 25 H 0.06 0.94 8.00 -51.93 -0.42 0.52 16 26 O -0.56 -9.83 13.40 -35.23 -0.47 -10.30 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.95 7.63 -51.93 -0.40 0.55 16 30 H 0.09 0.64 8.12 -51.93 -0.42 0.22 16 31 H 0.10 1.33 6.72 -51.92 -0.35 0.98 16 32 H 0.17 1.07 8.06 -52.49 -0.42 0.64 16 33 H 0.14 1.10 8.06 -52.48 -0.42 0.68 16 34 H 0.14 1.37 7.45 -52.49 -0.39 0.98 16 35 H 0.40 5.14 7.47 -40.82 -0.30 4.84 16 36 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.25 7.16 8.31 -40.82 -0.34 6.83 16 39 H 0.06 1.63 7.30 -51.93 -0.38 1.25 16 40 H 0.05 1.25 7.50 -51.93 -0.39 0.86 16 41 H 0.38 4.97 9.12 45.56 0.42 5.38 16 LS Contribution 340.04 15.07 5.12 5.12 Total: -1.00 -33.69 340.04 -7.93 -41.62 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -5.11 Total: 9.11 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: -1.93 Total: 6.58 kcal Atomic # 7 Polarization: -58.20 SS G_CDS: -0.59 Total: -58.79 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -0.40 Total: -20.74 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.69 -7.93 -41.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078180943.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.398 kcal (2) G-P(sol) polarization free energy of solvation -33.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds