Wall clock time and date at job start Tue Mar 31 2020 02:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46496 * 109.47629 * 2 1 4 4 C 1.35533 * 125.67755 * 265.41285 * 3 2 1 5 5 C 1.35454 * 108.87065 * 179.97438 * 4 3 2 6 6 C 1.39837 * 107.86770 * 359.97438 * 5 4 3 7 7 C 1.37655 * 125.67468 * 85.37856 * 3 2 1 8 8 C 1.46672 * 126.23855 * 0.02987 * 7 3 2 9 9 O 1.21697 * 119.99915 * 354.70528 * 8 7 3 10 10 N 1.34773 * 120.00458 * 174.70553 * 8 7 3 11 11 C 1.46498 * 120.00141 * 185.02348 * 10 8 7 12 12 H 1.09000 * 110.89027 * 31.11761 * 11 10 8 13 13 C 1.54908 * 111.00221 * 267.19412 * 11 10 8 14 14 N 1.47423 * 104.83465 * 204.91719 * 13 11 10 15 15 C 1.36940 * 125.65076 * 204.08553 * 14 13 11 16 16 H 1.07994 * 119.99827 * 0.02741 * 15 14 13 17 17 C 1.38811 * 119.99845 * 180.02562 * 15 14 13 18 18 N 1.31619 * 120.00452 * 359.97438 * 17 15 14 19 19 Si 1.86808 * 119.99838 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46836 * 59.99778 * 19 17 15 21 21 H 1.48501 * 109.47139 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47057 * 299.99902 * 19 17 15 23 23 C 1.47031 * 108.70370 * 24.12800 * 14 13 11 24 24 C 1.54329 * 107.26553 * 358.94108 * 23 14 13 25 25 H 1.09003 * 110.71309 * 96.17410 * 24 23 14 26 26 O 1.42896 * 110.86937 * 219.37054 * 24 23 14 27 27 H 1.09000 * 109.47131 * 59.99701 * 1 2 3 28 28 H 1.09002 * 109.47273 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47332 * 300.00223 * 1 2 3 30 30 H 1.08999 * 109.47332 * 239.99777 * 2 1 3 31 31 H 1.09009 * 109.46903 * 120.00183 * 2 1 3 32 32 H 1.07995 * 125.56749 * 0.24106 * 4 3 2 33 33 H 1.08005 * 126.06994 * 180.02562 * 5 4 3 34 34 H 1.07997 * 126.46296 * 180.02562 * 6 5 4 35 35 H 0.97002 * 120.00158 * 5.01990 * 10 8 7 36 36 H 1.08997 * 110.36800 * 323.75613 * 13 11 10 37 37 H 1.08997 * 110.36902 * 86.08117 * 13 11 10 38 38 H 0.96995 * 120.00493 * 180.02562 * 18 17 15 39 39 H 1.09002 * 109.88353 * 239.52567 * 23 14 13 40 40 H 1.08993 * 110.00856 * 118.42801 * 23 14 13 41 41 H 0.96703 * 114.00471 * 293.61588 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3650 2.0970 -1.0974 5 6 2.7673 3.3301 -0.7071 6 6 2.6696 3.3921 0.6865 7 6 2.2012 2.1680 1.1146 8 6 1.9440 1.7760 2.5044 9 8 1.4384 0.6962 2.7484 10 7 2.2676 2.6114 3.5112 11 6 2.1134 2.1770 4.9017 12 1 2.2699 1.1021 4.9928 13 6 0.7280 2.5865 5.4609 14 7 0.9187 2.6661 6.9206 15 6 -0.0666 2.5346 7.8626 16 1 -1.0865 2.3558 7.5558 17 6 0.2457 2.6312 9.2116 18 7 1.4888 2.8487 9.5855 19 14 -1.0984 2.4525 10.4966 20 1 -1.7301 1.1146 10.3693 21 1 -0.5094 2.5956 11.8523 22 1 -2.1243 3.5060 10.2895 23 6 2.3417 2.9111 7.1976 24 6 3.0711 2.9597 5.8384 25 1 3.1863 3.9892 5.4993 26 8 4.3417 2.3108 5.9191 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 2.3229 1.7436 -2.1170 33 1 3.1030 4.1248 -1.3569 34 1 2.9149 4.2391 1.3101 35 1 2.6028 3.5003 3.3151 36 1 0.4304 3.5570 5.0638 37 1 -0.0183 1.8307 5.2166 38 1 1.7071 2.9158 10.5282 39 1 2.7456 2.1021 7.8063 40 1 2.4623 3.8616 7.7172 41 1 4.9773 2.7604 6.4926 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078180943.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:44 Heat of formation + Delta-G solvation = -30.662875 kcal Electronic energy + Delta-G solvation = -23771.299798 eV Core-core repulsion = 20265.962373 eV Total energy + Delta-G solvation = -3505.337425 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.34753 -40.63157 -39.15976 -36.69474 -35.82102 -34.88338 -33.63625 -30.94235 -30.21898 -29.77207 -28.54809 -26.37806 -24.54501 -23.69426 -22.32015 -22.03420 -21.33582 -20.49977 -19.15189 -18.69771 -18.26821 -17.35315 -16.83735 -16.42799 -16.40286 -15.78403 -15.59735 -15.36349 -15.07529 -14.70295 -14.57487 -14.47257 -14.21306 -13.80226 -13.44809 -13.21866 -13.17668 -13.16381 -13.07003 -12.86261 -12.76551 -12.70551 -12.14489 -12.12422 -11.89569 -11.57056 -11.20500 -10.88633 -10.77257 -10.23717 -9.66548 -9.14008 -8.97961 -7.89493 -5.27167 0.50588 1.45199 1.48834 1.54857 1.65116 1.87465 2.30094 2.38619 2.48937 3.10887 3.31103 3.53211 3.70492 3.82476 3.89681 4.03287 4.11789 4.16949 4.20025 4.37583 4.42069 4.48040 4.49470 4.54729 4.76283 4.79975 4.87977 4.95607 5.17285 5.21942 5.32033 5.35129 5.40538 5.43472 5.64848 5.86767 6.05224 6.12211 6.38557 6.52798 6.86020 7.03487 7.17220 7.67703 8.30395 9.19990 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.024482 B = 0.003646 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.440128 B = 7678.396626 C = 8315.927589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.095 3.905 3 N -0.416 5.416 4 C 0.025 3.975 5 C -0.219 4.219 6 C -0.136 4.136 7 C -0.087 4.087 8 C 0.582 3.418 9 O -0.585 6.585 10 N -0.691 5.691 11 C 0.158 3.842 12 H 0.072 0.928 13 C 0.132 3.868 14 N -0.622 5.622 15 C -0.252 4.252 16 H 0.080 0.920 17 C -0.059 4.059 18 N -0.947 5.947 19 Si 0.981 3.019 20 H -0.280 1.280 21 H -0.290 1.290 22 H -0.274 1.274 23 C 0.162 3.838 24 C 0.092 3.908 25 H 0.095 0.905 26 O -0.569 6.569 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.032 0.968 30 H 0.124 0.876 31 H 0.075 0.925 32 H 0.204 0.796 33 H 0.167 0.833 34 H 0.160 0.840 35 H 0.415 0.585 36 H 0.042 0.958 37 H 0.032 0.968 38 H 0.250 0.750 39 H 0.021 0.979 40 H 0.028 0.972 41 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.804 1.516 -22.812 23.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.026 4.026 3 N -0.089 5.089 4 C -0.110 4.110 5 C -0.242 4.242 6 C -0.162 4.162 7 C -0.200 4.200 8 C 0.372 3.628 9 O -0.467 6.467 10 N -0.342 5.342 11 C 0.052 3.948 12 H 0.090 0.910 13 C 0.005 3.995 14 N -0.349 5.349 15 C -0.381 4.381 16 H 0.098 0.902 17 C -0.252 4.252 18 N -0.596 5.596 19 Si 0.809 3.191 20 H -0.206 1.206 21 H -0.216 1.216 22 H -0.200 1.200 23 C 0.036 3.964 24 C 0.031 3.969 25 H 0.113 0.887 26 O -0.377 6.377 27 H 0.091 0.909 28 H 0.106 0.894 29 H 0.051 0.949 30 H 0.142 0.858 31 H 0.093 0.907 32 H 0.221 0.779 33 H 0.185 0.815 34 H 0.177 0.823 35 H 0.253 0.747 36 H 0.059 0.941 37 H 0.051 0.949 38 H 0.059 0.941 39 H 0.039 0.961 40 H 0.046 0.954 41 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 4.038 -0.041 -22.778 23.133 hybrid contribution -0.319 0.513 1.661 1.767 sum 3.719 0.472 -21.117 21.447 Atomic orbital electron populations 1.22001 0.93956 1.03612 1.01763 1.22085 0.96115 0.79320 1.05041 1.44291 1.47159 1.12154 1.05313 1.22710 1.03164 0.92708 0.92448 1.21188 1.09978 0.98412 0.94632 1.21721 1.02315 0.95398 0.96809 1.19913 1.18100 0.94924 0.87023 1.17450 0.77124 0.83591 0.84638 1.90776 1.45717 1.24525 1.85654 1.45296 1.66566 1.18323 1.04058 1.21722 0.94449 0.98923 0.79730 0.90952 1.21911 0.95067 0.98338 0.84136 1.44504 1.04792 1.85038 1.00604 1.19412 0.89172 1.42673 0.86813 0.90173 1.25650 0.99019 1.01807 0.98765 1.70115 1.17976 1.56291 1.15170 0.85120 0.78085 0.78155 0.77751 1.20648 1.21569 1.19996 1.21619 0.83421 0.98831 0.92490 1.23155 0.83438 0.95599 0.94691 0.88705 1.86434 1.23528 1.56012 1.71687 0.90916 0.89443 0.94895 0.85790 0.90677 0.77897 0.81529 0.82288 0.74682 0.94076 0.94910 0.94068 0.96052 0.95369 0.75301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.10 10.17 71.98 0.73 -2.37 16 2 C 0.09 1.90 6.10 86.38 0.53 2.43 16 3 N -0.42 -9.25 2.76 -511.02 -1.41 -10.66 16 4 C 0.03 0.40 11.37 83.48 0.95 1.35 16 5 C -0.22 -3.63 10.81 22.01 0.24 -3.39 16 6 C -0.14 -2.83 10.36 22.57 0.23 -2.60 16 7 C -0.09 -2.33 6.89 40.35 0.28 -2.05 16 8 C 0.58 19.48 7.77 86.45 0.67 20.15 16 9 O -0.58 -23.70 13.98 -4.34 -0.06 -23.76 16 10 N -0.69 -21.47 5.18 -439.93 -2.28 -23.75 16 11 C 0.16 6.17 3.11 46.38 0.14 6.31 16 12 H 0.07 3.32 7.61 -2.39 -0.02 3.31 16 13 C 0.13 5.87 6.93 86.86 0.60 6.47 16 14 N -0.62 -33.01 3.40 -691.98 -2.35 -35.36 16 15 C -0.25 -14.56 10.28 84.03 0.86 -13.70 16 16 H 0.08 4.47 7.83 -2.91 -0.02 4.45 16 17 C -0.06 -3.38 5.49 84.86 0.47 -2.92 16 18 N -0.95 -56.49 10.31 21.65 0.22 -56.27 16 19 Si 0.98 46.17 29.55 68.60 2.03 48.19 16 20 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 21 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 22 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 23 C 0.16 7.94 5.15 86.73 0.45 8.39 16 24 C 0.09 3.36 3.97 31.78 0.13 3.48 16 25 H 0.10 2.84 8.00 -2.39 -0.02 2.82 16 26 O -0.57 -19.40 13.40 -148.98 -2.00 -21.40 16 27 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.03 0.90 7.63 -2.39 -0.02 0.88 16 30 H 0.12 1.48 8.12 -2.39 -0.02 1.46 16 31 H 0.07 1.97 6.72 -2.38 -0.02 1.95 16 32 H 0.20 1.51 8.06 -2.91 -0.02 1.49 16 33 H 0.17 1.83 8.06 -2.91 -0.02 1.80 16 34 H 0.16 2.59 7.45 -2.91 -0.02 2.56 16 35 H 0.42 9.96 7.47 -92.71 -0.69 9.27 16 36 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.25 14.47 8.31 -92.71 -0.77 13.69 16 39 H 0.02 1.20 7.30 -2.39 -0.02 1.18 16 40 H 0.03 1.48 7.50 -2.39 -0.02 1.46 16 41 H 0.40 9.95 9.12 -74.06 -0.68 9.27 16 Total: -1.00 -76.86 340.04 0.12 -76.74 By element: Atomic # 1 Polarization: 25.02 SS G_CDS: -0.31 Total: 24.70 kcal Atomic # 6 Polarization: 15.28 SS G_CDS: 6.28 Total: 21.56 kcal Atomic # 7 Polarization: -120.22 SS G_CDS: -5.82 Total: -126.04 kcal Atomic # 8 Polarization: -43.10 SS G_CDS: -2.06 Total: -45.16 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.19 kcal Total: -76.86 0.12 -76.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078180943.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.079 kcal (2) G-P(sol) polarization free energy of solvation -76.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds