Wall clock time and date at job start Tue Mar 31 2020 03:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36600 * 126.57970 * 2 1 4 4 C 1.47519 * 125.77228 * 359.95575 * 3 2 1 5 5 O 1.21599 * 119.99729 * 0.02562 * 4 3 2 6 6 N 1.34776 * 120.00198 * 179.97438 * 4 3 2 7 7 C 1.46493 * 120.00061 * 180.02562 * 6 4 3 8 8 H 1.08998 * 110.78195 * 31.75947 * 7 6 4 9 9 C 1.54333 * 110.85255 * 268.69412 * 7 6 4 10 10 N 1.47023 * 107.26879 * 219.67787 * 9 7 6 11 11 C 1.36939 * 125.64945 * 178.84833 * 10 9 7 12 12 H 1.07997 * 119.99728 * 179.41145 * 11 10 9 13 13 C 1.38815 * 119.99845 * 359.69059 * 11 10 9 14 14 N 1.31619 * 119.99884 * 359.72042 * 13 11 10 15 15 Si 1.86798 * 119.99660 * 179.72678 * 13 11 10 16 16 H 1.48498 * 109.47416 * 59.99578 * 15 13 11 17 17 H 1.48508 * 109.46609 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.46903 * 299.99163 * 15 13 11 19 19 C 1.47419 * 108.70109 * 358.57834 * 10 9 7 20 20 C 1.54907 * 104.83203 * 24.36071 * 19 10 9 21 21 H 1.09001 * 111.00464 * 81.06554 * 20 19 10 22 22 C 1.53002 * 111.00504 * 204.91615 * 20 19 10 23 23 N 1.34400 * 108.45656 * 180.21979 * 3 2 1 24 24 N 1.28765 * 109.52569 * 359.59029 * 23 3 2 25 25 N 1.34816 * 126.57945 * 179.97438 * 2 1 3 26 26 C 1.46498 * 126.59405 * 359.97438 * 25 2 1 27 27 H 1.08998 * 109.47187 * 89.99600 * 1 2 3 28 28 H 1.08998 * 109.47148 * 210.00029 * 1 2 3 29 29 H 1.09003 * 109.47037 * 329.99587 * 1 2 3 30 30 H 0.97002 * 119.99556 * 0.02562 * 6 4 3 31 31 H 1.08997 * 109.99574 * 100.19551 * 9 7 6 32 32 H 1.09001 * 109.77592 * 339.02798 * 9 7 6 33 33 H 0.97000 * 119.99517 * 180.02562 * 14 13 11 34 34 H 1.09000 * 110.36612 * 143.20177 * 19 10 9 35 35 H 1.09004 * 110.36874 * 265.41109 * 19 10 9 36 36 H 1.08997 * 109.47509 * 58.54436 * 22 20 19 37 37 H 1.09004 * 109.47376 * 178.55013 * 22 20 19 38 38 H 1.09007 * 109.46764 * 298.54185 * 22 20 19 39 39 H 1.08998 * 109.47113 * 89.99872 * 26 25 2 40 40 H 1.09005 * 109.46754 * 210.00090 * 26 25 2 41 41 H 1.08995 * 109.46915 * 329.99473 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8738 2.5027 -0.0009 5 8 0.6860 2.7628 -0.0013 6 7 2.7817 3.4988 -0.0003 7 6 2.3376 4.8947 -0.0006 8 1 1.3943 5.0006 0.5351 9 6 2.2034 5.4282 -1.4426 10 7 2.7046 6.8103 -1.4451 11 6 2.7780 7.6307 -2.5391 12 1 3.1545 8.6376 -2.4346 13 6 2.3631 7.1701 -3.7811 14 7 1.9043 5.9431 -3.9083 15 14 2.4561 8.2918 -5.2719 16 1 3.8654 8.7037 -5.4944 17 1 1.9579 7.5670 -6.4685 18 1 1.6194 9.4962 -5.0381 19 6 3.1089 7.1689 -0.0735 20 6 3.4240 5.8167 0.6133 21 1 4.4239 5.4696 0.3526 22 6 3.2607 5.9213 2.1310 23 7 3.5984 0.6789 -0.0049 24 7 3.6299 -0.6084 0.0007 25 7 2.3104 -1.0826 0.0005 26 6 1.8863 -2.4849 0.0016 27 1 -0.3633 0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 3.7293 3.2912 0.0004 31 1 1.1578 5.4124 -1.7500 32 1 2.8001 4.8164 -2.1192 33 1 1.6147 5.6211 -4.7763 34 1 3.9970 7.8007 -0.0928 35 1 2.2938 7.6772 0.4417 36 1 2.2415 6.2277 2.3665 37 1 3.4628 4.9516 2.5860 38 1 3.9615 6.6591 2.5219 39 1 1.7808 -2.8334 -1.0257 40 1 2.6333 -3.0899 0.5157 41 1 0.9295 -2.5746 0.5159 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079519961.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:34 Heat of formation + Delta-G solvation = 84.423575 kcal Electronic energy + Delta-G solvation = -23804.827643 eV Core-core repulsion = 20336.773492 eV Total energy + Delta-G solvation = -3468.054151 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.25689 -39.23992 -37.37843 -35.06473 -33.78858 -32.52773 -32.31887 -30.30355 -28.73251 -27.61933 -27.24518 -25.55828 -23.96643 -22.92638 -21.22980 -20.51311 -19.86422 -19.59806 -17.72706 -16.83209 -16.48363 -15.94103 -15.73001 -14.89068 -14.37620 -14.28323 -14.22236 -13.72577 -13.55438 -13.38572 -13.14560 -13.05290 -12.70351 -12.67964 -12.60299 -11.95788 -11.88270 -11.63893 -11.26689 -11.19264 -10.95613 -10.70955 -10.55980 -10.36963 -10.28538 -9.91733 -9.89226 -9.67746 -9.58812 -9.13594 -8.55695 -8.36031 -6.76781 -5.62941 -2.97939 1.08623 1.82519 1.93608 3.45380 3.48058 3.50342 3.51312 3.62091 4.17388 4.21538 4.53146 4.56131 4.65450 4.77988 4.93252 5.13131 5.21578 5.36312 5.39708 5.52788 5.57006 5.61453 5.71801 5.83346 5.91548 6.07566 6.09626 6.23904 6.27106 6.32259 6.42215 6.57045 6.70196 6.85066 7.02222 7.61313 7.65019 7.85381 7.91654 8.07818 8.32455 8.59689 9.28036 9.88908 10.54194 11.47696 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.017919 B = 0.004118 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.202527 B = 6797.013337 C = 7666.993598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.120 3.880 3 C -0.097 4.097 4 C 0.603 3.397 5 O -0.538 6.538 6 N -0.694 5.694 7 C 0.120 3.880 8 H 0.091 0.909 9 C 0.173 3.827 10 N -0.606 5.606 11 C -0.230 4.230 12 H 0.078 0.922 13 C -0.007 4.007 14 N -0.919 5.919 15 Si 0.912 3.088 16 H -0.285 1.285 17 H -0.291 1.291 18 H -0.285 1.285 19 C 0.141 3.859 20 C -0.114 4.114 21 H 0.078 0.922 22 C -0.137 4.137 23 N -0.201 5.201 24 N -0.074 5.074 25 N -0.369 5.369 26 C 0.089 3.911 27 H 0.093 0.907 28 H 0.072 0.928 29 H 0.113 0.887 30 H 0.404 0.596 31 H 0.048 0.952 32 H 0.052 0.948 33 H 0.252 0.748 34 H 0.042 0.958 35 H 0.022 0.978 36 H 0.054 0.946 37 H 0.050 0.950 38 H 0.053 0.947 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.246 -15.748 11.535 19.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.017 4.017 3 C -0.237 4.237 4 C 0.387 3.613 5 O -0.414 6.414 6 N -0.343 5.343 7 C 0.016 3.984 8 H 0.109 0.891 9 C 0.047 3.953 10 N -0.333 5.333 11 C -0.358 4.358 12 H 0.096 0.904 13 C -0.204 4.204 14 N -0.567 5.567 15 Si 0.742 3.258 16 H -0.212 1.212 17 H -0.217 1.217 18 H -0.212 1.212 19 C 0.015 3.985 20 C -0.134 4.134 21 H 0.097 0.903 22 C -0.194 4.194 23 N -0.074 5.074 24 N -0.054 5.054 25 N -0.155 5.155 26 C -0.053 4.053 27 H 0.111 0.889 28 H 0.090 0.910 29 H 0.132 0.868 30 H 0.239 0.761 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.040 0.960 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.107 0.893 40 H 0.118 0.882 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.666 -15.992 11.287 19.586 hybrid contribution -0.424 0.362 -0.993 1.138 sum -1.090 -15.630 10.294 18.748 Atomic orbital electron populations 1.20721 0.84634 1.05165 1.04824 1.21926 0.96256 0.86309 0.97217 1.21366 0.88807 0.95790 1.17731 1.16650 0.85778 0.82276 0.76601 1.90758 1.15859 1.83427 1.51375 1.45697 1.09654 1.05903 1.73060 1.22548 0.97364 0.78171 1.00358 0.89112 1.21487 0.99493 0.85254 0.89046 1.44397 1.74600 1.11482 1.02773 1.19008 1.36850 0.94510 0.85477 0.90384 1.24817 1.01220 0.96727 0.97621 1.69969 1.48257 1.15350 1.23078 0.86207 0.77660 0.79540 0.82380 1.21201 1.21666 1.21177 1.21578 0.97143 0.93216 0.86590 1.22624 0.98732 0.97568 0.94503 0.90326 1.21692 1.01637 1.01019 0.95086 1.74586 1.19259 1.04011 1.09573 1.81961 0.95946 1.03588 1.23875 1.50240 1.06552 1.07643 1.51060 1.22121 1.02255 0.76251 1.04625 0.88876 0.90970 0.86812 0.76142 0.93428 0.93025 0.93738 0.93989 0.96035 0.92641 0.93117 0.92760 0.89347 0.88235 0.88653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.91 9.57 36.00 0.34 -0.56 16 2 C 0.12 1.53 7.02 -81.87 -0.57 0.96 16 3 C -0.10 -1.56 6.99 -83.55 -0.58 -2.14 16 4 C 0.60 10.98 7.82 -12.48 -0.10 10.89 16 5 O -0.54 -10.78 14.36 5.28 0.08 -10.70 16 6 N -0.69 -12.51 5.10 -53.07 -0.27 -12.78 16 7 C 0.12 2.39 2.78 -66.10 -0.18 2.21 16 8 H 0.09 1.86 7.42 -51.93 -0.39 1.47 16 9 C 0.17 4.40 5.13 -3.06 -0.02 4.38 16 10 N -0.61 -15.86 3.39 -170.07 -0.58 -16.44 16 11 C -0.23 -6.56 10.28 -15.06 -0.15 -6.72 16 12 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 13 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 14 N -0.92 -27.98 10.31 55.49 0.57 -27.41 16 15 Si 0.91 22.62 29.55 -169.99 -5.02 17.59 16 16 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 17 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 19 C 0.14 2.94 6.70 -2.53 -0.02 2.93 16 20 C -0.11 -2.00 3.27 -88.47 -0.29 -2.29 16 21 H 0.08 1.36 8.01 -51.93 -0.42 0.94 16 22 C -0.14 -1.92 9.30 37.16 0.35 -1.57 16 23 N -0.20 -3.27 12.04 32.85 0.40 -2.87 16 24 N -0.07 -1.08 13.79 60.35 0.83 -0.25 16 25 N -0.37 -4.12 4.03 -63.59 -0.26 -4.38 16 26 C 0.09 0.47 11.33 59.85 0.68 1.14 16 27 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.07 0.42 7.18 -51.93 -0.37 0.05 16 29 H 0.11 1.31 6.43 -51.93 -0.33 0.98 16 30 H 0.40 6.72 8.25 -40.82 -0.34 6.38 16 31 H 0.05 1.38 7.53 -51.93 -0.39 0.99 16 32 H 0.05 1.46 7.24 -51.93 -0.38 1.09 16 33 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 34 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.02 0.45 8.04 -51.93 -0.42 0.03 16 36 H 0.05 0.77 8.11 -51.93 -0.42 0.35 16 37 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.09 0.26 7.16 -51.93 -0.37 -0.11 16 LS Contribution 339.93 15.07 5.12 5.12 Total: -1.00 -35.21 339.93 -5.68 -40.88 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -5.90 Total: 2.32 kcal Atomic # 6 Polarization: 9.55 SS G_CDS: -0.64 Total: 8.91 kcal Atomic # 7 Polarization: -64.83 SS G_CDS: 0.69 Total: -64.13 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.08 Total: -10.70 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -35.21 -5.68 -40.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079519961.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.307 kcal (2) G-P(sol) polarization free energy of solvation -35.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds