Wall clock time and date at job start Tue Mar 31 2020 03:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36600 * 126.57970 * 2 1 4 4 C 1.47519 * 125.77228 * 359.95575 * 3 2 1 5 5 O 1.21599 * 119.99729 * 0.02562 * 4 3 2 6 6 N 1.34776 * 120.00198 * 179.97438 * 4 3 2 7 7 C 1.46493 * 120.00061 * 180.02562 * 6 4 3 8 8 H 1.08998 * 110.78195 * 31.75947 * 7 6 4 9 9 C 1.54333 * 110.85255 * 268.69412 * 7 6 4 10 10 N 1.47023 * 107.26879 * 219.67787 * 9 7 6 11 11 C 1.36939 * 125.64945 * 178.84833 * 10 9 7 12 12 H 1.07997 * 119.99728 * 179.41145 * 11 10 9 13 13 C 1.38815 * 119.99845 * 359.69059 * 11 10 9 14 14 N 1.31619 * 119.99884 * 359.72042 * 13 11 10 15 15 Si 1.86798 * 119.99660 * 179.72678 * 13 11 10 16 16 H 1.48498 * 109.47416 * 59.99578 * 15 13 11 17 17 H 1.48508 * 109.46609 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.46903 * 299.99163 * 15 13 11 19 19 C 1.47419 * 108.70109 * 358.57834 * 10 9 7 20 20 C 1.54907 * 104.83203 * 24.36071 * 19 10 9 21 21 H 1.09001 * 111.00464 * 81.06554 * 20 19 10 22 22 C 1.53002 * 111.00504 * 204.91615 * 20 19 10 23 23 N 1.34400 * 108.45656 * 180.21979 * 3 2 1 24 24 N 1.28765 * 109.52569 * 359.59029 * 23 3 2 25 25 N 1.34816 * 126.57945 * 179.97438 * 2 1 3 26 26 C 1.46498 * 126.59405 * 359.97438 * 25 2 1 27 27 H 1.08998 * 109.47187 * 89.99600 * 1 2 3 28 28 H 1.08998 * 109.47148 * 210.00029 * 1 2 3 29 29 H 1.09003 * 109.47037 * 329.99587 * 1 2 3 30 30 H 0.97002 * 119.99556 * 0.02562 * 6 4 3 31 31 H 1.08997 * 109.99574 * 100.19551 * 9 7 6 32 32 H 1.09001 * 109.77592 * 339.02798 * 9 7 6 33 33 H 0.97000 * 119.99517 * 180.02562 * 14 13 11 34 34 H 1.09000 * 110.36612 * 143.20177 * 19 10 9 35 35 H 1.09004 * 110.36874 * 265.41109 * 19 10 9 36 36 H 1.08997 * 109.47509 * 58.54436 * 22 20 19 37 37 H 1.09004 * 109.47376 * 178.55013 * 22 20 19 38 38 H 1.09007 * 109.46764 * 298.54185 * 22 20 19 39 39 H 1.08998 * 109.47113 * 89.99872 * 26 25 2 40 40 H 1.09005 * 109.46754 * 210.00090 * 26 25 2 41 41 H 1.08995 * 109.46915 * 329.99473 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8738 2.5027 -0.0009 5 8 0.6860 2.7628 -0.0013 6 7 2.7817 3.4988 -0.0003 7 6 2.3376 4.8947 -0.0006 8 1 1.3943 5.0006 0.5351 9 6 2.2034 5.4282 -1.4426 10 7 2.7046 6.8103 -1.4451 11 6 2.7780 7.6307 -2.5391 12 1 3.1545 8.6376 -2.4346 13 6 2.3631 7.1701 -3.7811 14 7 1.9043 5.9431 -3.9083 15 14 2.4561 8.2918 -5.2719 16 1 3.8654 8.7037 -5.4944 17 1 1.9579 7.5670 -6.4685 18 1 1.6194 9.4962 -5.0381 19 6 3.1089 7.1689 -0.0735 20 6 3.4240 5.8167 0.6133 21 1 4.4239 5.4696 0.3526 22 6 3.2607 5.9213 2.1310 23 7 3.5984 0.6789 -0.0049 24 7 3.6299 -0.6084 0.0007 25 7 2.3104 -1.0826 0.0005 26 6 1.8863 -2.4849 0.0016 27 1 -0.3633 0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 3.7293 3.2912 0.0004 31 1 1.1578 5.4124 -1.7500 32 1 2.8001 4.8164 -2.1192 33 1 1.6147 5.6211 -4.7763 34 1 3.9970 7.8007 -0.0928 35 1 2.2938 7.6772 0.4417 36 1 2.2415 6.2277 2.3665 37 1 3.4628 4.9516 2.5860 38 1 3.9615 6.6591 2.5219 39 1 1.7808 -2.8334 -1.0257 40 1 2.6333 -3.0899 0.5157 41 1 0.9295 -2.5746 0.5159 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001079519961.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:34 Heat of formation + Delta-G solvation = 57.636539 kcal Electronic energy + Delta-G solvation = -23805.989216 eV Core-core repulsion = 20336.773492 eV Total energy + Delta-G solvation = -3469.215724 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.30543 -40.76331 -39.03943 -36.03891 -35.51849 -34.22003 -33.29199 -32.15647 -30.05346 -28.69165 -28.33289 -27.33054 -25.56404 -24.32913 -22.46707 -21.87764 -21.47665 -21.05785 -18.94222 -18.86347 -17.49746 -17.36655 -16.99819 -16.69191 -15.85495 -15.65967 -15.46395 -15.24815 -14.74470 -14.47747 -14.21802 -14.14512 -14.05872 -13.97885 -13.65802 -13.33252 -13.24369 -13.02913 -12.97344 -12.83933 -12.55555 -12.24141 -12.20523 -12.04146 -11.84212 -11.65815 -11.45295 -11.16727 -11.07604 -10.72537 -10.29668 -9.91436 -8.91111 -7.83131 -5.21100 0.09976 0.59030 1.12835 1.44924 1.49432 1.55494 2.09754 2.26527 2.50845 3.16280 3.34905 3.42501 3.61835 3.62801 3.75212 3.81532 4.06884 4.11969 4.30910 4.38860 4.50300 4.59540 4.63773 4.66005 4.67719 4.73275 4.86229 4.89791 5.05295 5.07968 5.09453 5.23497 5.30363 5.45634 5.50818 5.51948 5.62673 5.79230 6.17932 6.46309 6.88526 7.07319 7.17922 7.76979 8.41264 9.26133 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.017919 B = 0.004118 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.202527 B = 6797.013337 C = 7666.993598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.132 3.868 3 C -0.131 4.131 4 C 0.601 3.399 5 O -0.563 6.563 6 N -0.692 5.692 7 C 0.137 3.863 8 H 0.086 0.914 9 C 0.189 3.811 10 N -0.628 5.628 11 C -0.244 4.244 12 H 0.089 0.911 13 C -0.069 4.069 14 N -0.954 5.954 15 Si 0.982 3.018 16 H -0.274 1.274 17 H -0.297 1.297 18 H -0.275 1.275 19 C 0.134 3.866 20 C -0.097 4.097 21 H 0.084 0.916 22 C -0.127 4.127 23 N -0.224 5.224 24 N -0.091 5.091 25 N -0.352 5.352 26 C 0.072 3.928 27 H 0.098 0.902 28 H 0.119 0.881 29 H 0.092 0.908 30 H 0.411 0.589 31 H -0.004 1.004 32 H 0.013 0.987 33 H 0.244 0.756 34 H 0.054 0.946 35 H 0.031 0.969 36 H 0.056 0.944 37 H 0.064 0.936 38 H 0.077 0.923 39 H 0.106 0.894 40 H 0.114 0.886 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.035 -16.794 12.980 21.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.008 4.008 3 C -0.271 4.271 4 C 0.387 3.613 5 O -0.441 6.441 6 N -0.341 5.341 7 C 0.031 3.969 8 H 0.104 0.896 9 C 0.062 3.938 10 N -0.354 5.354 11 C -0.372 4.372 12 H 0.107 0.893 13 C -0.262 4.262 14 N -0.603 5.603 15 Si 0.809 3.191 16 H -0.200 1.200 17 H -0.224 1.224 18 H -0.201 1.201 19 C 0.009 3.991 20 C -0.117 4.117 21 H 0.103 0.897 22 C -0.185 4.185 23 N -0.097 5.097 24 N -0.071 5.071 25 N -0.138 5.138 26 C -0.066 4.066 27 H 0.117 0.883 28 H 0.137 0.863 29 H 0.111 0.889 30 H 0.247 0.753 31 H 0.015 0.985 32 H 0.031 0.969 33 H 0.053 0.947 34 H 0.073 0.927 35 H 0.049 0.951 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.124 0.876 40 H 0.132 0.868 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.417 -17.058 12.778 21.317 hybrid contribution -0.538 0.582 -1.430 1.635 sum -0.955 -16.476 11.348 20.029 Atomic orbital electron populations 1.20824 0.82314 1.06440 1.05460 1.22308 0.97444 0.85789 0.95222 1.21204 0.89787 0.95307 1.20784 1.17004 0.85397 0.83309 0.75627 1.90735 1.16805 1.84116 1.52471 1.45596 1.10118 1.05179 1.73222 1.22161 0.98490 0.79634 0.96589 0.89623 1.21109 0.95525 0.85231 0.91914 1.44717 1.74668 1.11531 1.04522 1.19503 1.35966 0.95284 0.86494 0.89319 1.25735 1.01491 0.98228 1.00758 1.70240 1.49672 1.17337 1.23021 0.85108 0.78108 0.77652 0.78204 1.19956 1.22361 1.20064 1.21841 0.97693 0.95312 0.84244 1.22556 0.97850 0.94484 0.96801 0.89722 1.21637 1.02481 1.02647 0.91724 1.74542 1.19689 1.04949 1.10514 1.81839 0.97972 1.02967 1.24343 1.50595 1.05122 1.09332 1.48779 1.22740 1.04328 0.72997 1.06563 0.88348 0.86288 0.88903 0.75333 0.98545 0.96876 0.94670 0.92740 0.95140 0.92522 0.91738 0.90383 0.87589 0.86763 0.85230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.58 9.57 71.24 0.68 -0.90 16 2 C 0.13 3.19 7.02 41.72 0.29 3.48 16 3 C -0.13 -4.23 6.99 40.82 0.29 -3.94 16 4 C 0.60 22.63 7.82 86.69 0.68 23.31 16 5 O -0.56 -23.47 14.36 -4.03 -0.06 -23.53 16 6 N -0.69 -25.71 5.10 -440.08 -2.25 -27.96 16 7 C 0.14 5.58 2.78 46.18 0.13 5.71 16 8 H 0.09 3.60 7.42 -2.39 -0.02 3.58 16 9 C 0.19 10.14 5.13 86.73 0.45 10.59 16 10 N -0.63 -33.73 3.39 -691.98 -2.35 -36.08 16 11 C -0.24 -14.14 10.28 84.03 0.86 -13.28 16 12 H 0.09 4.82 7.83 -2.91 -0.02 4.80 16 13 C -0.07 -4.13 5.49 84.86 0.47 -3.66 16 14 N -0.95 -60.93 10.31 21.65 0.22 -60.70 16 15 Si 0.98 47.43 29.55 68.60 2.03 49.46 16 16 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 17 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 18 H -0.27 -12.70 7.11 99.48 0.71 -12.00 16 19 C 0.13 5.50 6.70 86.86 0.58 6.09 16 20 C -0.10 -3.31 3.27 -9.40 -0.03 -3.34 16 21 H 0.08 2.81 8.01 -2.39 -0.02 2.79 16 22 C -0.13 -3.23 9.30 71.98 0.67 -2.56 16 23 N -0.22 -7.33 12.04 -50.00 -0.60 -7.93 16 24 N -0.09 -2.59 13.79 37.02 0.51 -2.08 16 25 N -0.35 -7.14 4.03 -355.10 -1.43 -8.57 16 26 C 0.07 0.49 11.33 127.77 1.45 1.94 16 27 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.12 0.89 7.18 -2.39 -0.02 0.87 16 29 H 0.09 2.09 6.43 -2.39 -0.02 2.07 16 30 H 0.41 14.02 8.25 -92.71 -0.76 13.25 16 31 H 0.00 -0.23 7.53 -2.39 -0.02 -0.25 16 32 H 0.01 0.79 7.24 -2.39 -0.02 0.77 16 33 H 0.24 15.26 8.31 -92.71 -0.77 14.49 16 34 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.03 1.22 8.04 -2.38 -0.02 1.20 16 36 H 0.06 1.44 8.11 -2.39 -0.02 1.42 16 37 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 39 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 40 H 0.11 0.52 8.14 -2.38 -0.02 0.50 16 41 H 0.13 0.05 7.16 -2.39 -0.02 0.04 16 Total: -1.00 -81.77 339.93 2.87 -78.91 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: 0.29 Total: 15.06 kcal Atomic # 6 Polarization: 16.92 SS G_CDS: 6.51 Total: 23.43 kcal Atomic # 7 Polarization: -137.43 SS G_CDS: -5.90 Total: -143.33 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: -0.06 Total: -23.53 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 2.03 Total: 49.46 kcal Total: -81.77 2.87 -78.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079519961.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.543 kcal (2) G-P(sol) polarization free energy of solvation -81.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds