Wall clock time and date at job start Tue Mar 31 2020 03:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30833 * 125.95873 * 2 1 4 4 C 1.33238 * 109.82829 * 179.97438 * 3 2 1 5 5 C 1.50700 * 125.52647 * 180.02562 * 4 3 2 6 6 C 1.50700 * 109.47090 * 90.00350 * 5 4 3 7 7 O 1.21279 * 120.00135 * 359.72067 * 6 5 4 8 8 N 1.34780 * 120.00209 * 180.02562 * 6 5 4 9 9 C 1.46496 * 120.00341 * 179.72010 * 8 6 5 10 10 H 1.09007 * 110.88379 * 31.12050 * 9 8 6 11 11 C 1.54913 * 111.00767 * 267.19667 * 9 8 6 12 12 N 1.47416 * 104.83111 * 204.91729 * 11 9 8 13 13 C 1.36942 * 125.64654 * 204.08508 * 12 11 9 14 14 H 1.08000 * 120.00578 * 169.99819 * 13 12 11 15 15 C 1.38822 * 119.99722 * 349.99173 * 13 12 11 16 16 N 1.31620 * 119.99862 * 350.42328 * 15 13 12 17 17 Si 1.86798 * 119.99773 * 170.42221 * 15 13 12 18 18 H 1.48501 * 109.46794 * 94.14123 * 17 15 13 19 19 H 1.48498 * 109.46945 * 214.14190 * 17 15 13 20 20 H 1.48492 * 109.47328 * 334.14171 * 17 15 13 21 21 C 1.47018 * 108.70708 * 24.12437 * 12 11 9 22 22 C 1.54324 * 107.27077 * 358.94220 * 21 12 11 23 23 H 1.09006 * 110.71582 * 96.16547 * 22 21 12 24 24 C 1.52994 * 110.71879 * 219.43896 * 22 21 12 25 25 N 1.30716 * 108.94681 * 0.26391 * 4 3 2 26 26 N 1.34422 * 125.96532 * 179.97438 * 2 1 3 27 27 H 0.97005 * 126.81890 * 0.02562 * 26 2 1 28 28 H 1.09000 * 109.47350 * 90.02464 * 1 2 3 29 29 H 1.09000 * 109.47294 * 210.01834 * 1 2 3 30 30 H 1.08996 * 109.47734 * 330.02548 * 1 2 3 31 31 H 1.08995 * 109.47437 * 330.00229 * 5 4 3 32 32 H 1.09003 * 109.47174 * 209.99649 * 5 4 3 33 33 H 0.97007 * 119.99372 * 359.72245 * 8 6 5 34 34 H 1.08999 * 110.36288 * 323.75618 * 11 9 8 35 35 H 1.09000 * 110.36665 * 86.07468 * 11 9 8 36 36 H 0.97000 * 119.99983 * 180.02562 * 16 15 13 37 37 H 1.09000 * 109.88318 * 239.51799 * 21 12 11 38 38 H 1.09005 * 109.88167 * 118.35659 * 21 12 11 39 39 H 1.09002 * 109.46809 * 173.52386 * 24 22 21 40 40 H 1.08996 * 109.47518 * 293.52162 * 24 22 21 41 41 H 1.08999 * 109.46992 * 53.52801 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2752 1.0590 0.0000 4 6 3.5551 0.6888 0.0006 5 6 4.7371 1.6237 0.0013 6 6 5.1304 1.9351 1.4223 7 8 4.5087 1.4500 2.3438 8 7 6.1693 2.7575 1.6693 9 6 6.5478 3.0650 3.0507 10 1 6.3287 2.2249 3.7099 11 6 5.8482 4.3561 3.5440 12 7 6.7221 4.8744 4.6121 13 6 6.3300 5.6939 5.6367 14 1 7.0023 5.8902 6.4588 15 6 5.0683 6.2726 5.6186 16 7 4.3220 6.1904 4.5376 17 14 4.4297 7.1678 7.1287 18 1 4.7277 8.6175 7.0075 19 1 2.9617 6.9715 7.2365 20 1 5.0920 6.6261 8.3423 21 6 8.0845 4.3665 4.3945 22 6 8.0436 3.4672 3.1411 23 1 8.3469 4.0259 2.2556 24 6 8.9258 2.2319 3.3321 25 7 3.6194 -0.6167 -0.0048 26 7 2.2964 -1.0880 0.0005 27 1 2.0093 -2.0146 0.0006 28 1 -0.3634 -0.0004 -1.0276 29 1 -0.3634 -0.8898 0.5141 30 1 -0.3634 0.8901 0.5134 31 1 4.4702 2.5472 -0.5124 32 1 5.5745 1.1512 -0.5122 33 1 6.6663 3.1458 0.9323 34 1 5.7712 5.0795 2.7323 35 1 4.8601 4.1240 3.9414 36 1 3.4406 6.5951 4.5248 37 1 8.4055 3.7843 5.2583 38 1 8.7689 5.1991 4.2312 39 1 8.7933 1.5566 2.4868 40 1 9.9704 2.5373 3.3929 41 1 8.6422 1.7218 4.2526 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001079668803.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:58 Heat of formation + Delta-G solvation = 38.612405 kcal Electronic energy + Delta-G solvation = -23456.109440 eV Core-core repulsion = 19986.068768 eV Total energy + Delta-G solvation = -3470.040672 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.17413 -40.91581 -39.14566 -35.63038 -34.70234 -34.26522 -33.36327 -32.20084 -31.19650 -29.34366 -28.50671 -27.35902 -25.32934 -23.19308 -22.29257 -21.71486 -21.54977 -20.72846 -18.91369 -18.88056 -18.20675 -17.41375 -16.89002 -16.49370 -16.20159 -15.76705 -15.50618 -15.14714 -14.58128 -14.44570 -14.35645 -14.22202 -13.96532 -13.65445 -13.62287 -13.28288 -13.14657 -13.01042 -12.85648 -12.74431 -12.63632 -12.21848 -12.03877 -11.85948 -11.67755 -11.45290 -11.28474 -11.10143 -10.91001 -10.71247 -10.44843 -9.98086 -8.88158 -7.89277 -5.25420 0.54664 1.42711 1.46103 1.55310 1.60812 1.67595 1.74226 2.33561 2.50062 3.02685 3.30513 3.52568 3.65510 3.70600 3.85436 4.02204 4.05466 4.09837 4.39886 4.42874 4.53819 4.62293 4.66848 4.69043 4.75635 4.91088 5.03691 5.05556 5.10266 5.22127 5.24222 5.31232 5.36160 5.43132 5.50300 5.58231 5.75476 6.17742 6.21126 6.61418 7.04332 7.07496 7.32017 7.74331 8.39569 9.21849 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.015216 B = 0.004079 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.772047 B = 6863.614822 C = 8355.589826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.284 3.716 3 N -0.574 5.574 4 C 0.235 3.765 5 C -0.041 4.041 6 C 0.517 3.483 7 O -0.587 6.587 8 N -0.696 5.696 9 C 0.137 3.863 10 H 0.065 0.935 11 C 0.182 3.818 12 N -0.626 5.626 13 C -0.248 4.248 14 H 0.083 0.917 15 C -0.066 4.066 16 N -0.948 5.948 17 Si 0.978 3.022 18 H -0.280 1.280 19 H -0.297 1.297 20 H -0.267 1.267 21 C 0.132 3.868 22 C -0.091 4.091 23 H 0.102 0.898 24 C -0.129 4.129 25 N -0.333 5.333 26 N -0.474 5.474 27 H 0.455 0.545 28 H 0.117 0.883 29 H 0.112 0.888 30 H 0.090 0.910 31 H 0.143 0.857 32 H 0.155 0.845 33 H 0.419 0.581 34 H 0.006 0.994 35 H 0.014 0.986 36 H 0.246 0.754 37 H 0.031 0.969 38 H 0.033 0.967 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.071 -14.359 -14.717 20.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.006 3.994 3 N -0.305 5.305 4 C -0.048 4.048 5 C -0.083 4.083 6 C 0.304 3.696 7 O -0.467 6.467 8 N -0.348 5.348 9 C 0.030 3.970 10 H 0.084 0.916 11 C 0.056 3.944 12 N -0.353 5.353 13 C -0.377 4.377 14 H 0.101 0.899 15 C -0.259 4.259 16 N -0.596 5.596 17 Si 0.806 3.194 18 H -0.207 1.207 19 H -0.223 1.223 20 H -0.192 1.192 21 C 0.007 3.993 22 C -0.110 4.110 23 H 0.120 0.880 24 C -0.187 4.187 25 N -0.163 5.163 26 N -0.194 5.194 27 H 0.304 0.696 28 H 0.135 0.865 29 H 0.130 0.870 30 H 0.109 0.891 31 H 0.161 0.839 32 H 0.173 0.827 33 H 0.257 0.743 34 H 0.024 0.976 35 H 0.032 0.968 36 H 0.055 0.945 37 H 0.049 0.951 38 H 0.051 0.949 39 H 0.089 0.911 40 H 0.098 0.902 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -0.071 -14.627 -14.011 20.255 hybrid contribution -0.897 0.372 0.775 1.242 sum -0.968 -14.255 -13.236 19.476 Atomic orbital electron populations 1.20636 0.80201 1.06166 1.06299 1.25219 0.98323 0.82061 0.93827 1.70321 1.02057 1.31603 1.26471 1.23680 0.93375 0.90201 0.97526 1.20016 0.94408 0.99988 0.93875 1.20825 0.79388 0.77931 0.91489 1.90718 1.53654 1.54055 1.48268 1.45555 1.32907 1.47983 1.08345 1.22119 0.95496 0.96505 0.82890 0.91632 1.21347 0.92785 0.90746 0.89561 1.44668 1.05219 1.56117 1.29296 1.19446 0.99421 1.20337 0.98457 0.89873 1.25733 0.98212 1.01582 1.00390 1.70182 1.11147 1.50016 1.28257 0.85081 0.76904 0.78313 0.79151 1.20659 1.22336 1.19171 1.21626 0.86484 0.95340 0.95843 1.22366 0.92639 0.97407 0.98612 0.87976 1.21690 0.99552 0.95578 1.01834 1.77808 0.98703 1.12213 1.27535 1.47832 1.03268 1.10880 1.57441 0.69590 0.86453 0.86993 0.89080 0.83892 0.82720 0.74297 0.97567 0.96770 0.94453 0.95092 0.94947 0.91072 0.90230 0.93800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.88 10.51 71.23 0.75 -0.13 16 2 C 0.28 6.62 8.24 138.23 1.14 7.76 16 3 N -0.57 -18.34 11.19 -179.74 -2.01 -20.35 16 4 C 0.24 7.34 6.63 138.63 0.92 8.26 16 5 C -0.04 -1.03 6.33 29.10 0.18 -0.85 16 6 C 0.52 18.05 7.82 87.66 0.69 18.73 16 7 O -0.59 -27.58 15.67 -3.03 -0.05 -27.62 16 8 N -0.70 -21.70 5.20 -435.96 -2.27 -23.97 16 9 C 0.14 5.41 2.87 46.38 0.13 5.55 16 10 H 0.07 2.97 7.45 -2.38 -0.02 2.96 16 11 C 0.18 9.62 5.11 86.86 0.44 10.07 16 12 N -0.63 -33.80 3.39 -691.99 -2.35 -36.14 16 13 C -0.25 -14.57 10.24 84.04 0.86 -13.71 16 14 H 0.08 4.64 7.85 -2.91 -0.02 4.62 16 15 C -0.07 -3.94 5.40 84.86 0.46 -3.49 16 16 N -0.95 -60.62 10.68 21.65 0.23 -60.38 16 17 Si 0.98 47.90 29.56 68.60 2.03 49.93 16 18 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 19 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 20 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 21 C 0.13 5.43 6.84 86.73 0.59 6.02 16 22 C -0.09 -2.89 3.19 -9.61 -0.03 -2.92 16 23 H 0.10 2.75 8.00 -2.38 -0.02 2.73 16 24 C -0.13 -3.16 9.16 71.98 0.66 -2.50 16 25 N -0.33 -9.84 12.80 -51.33 -0.66 -10.49 16 26 N -0.47 -10.37 7.45 -50.71 -0.38 -10.75 16 27 H 0.46 5.85 8.96 -213.09 -1.91 3.94 16 28 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.14 2.96 8.14 -2.39 -0.02 2.94 16 32 H 0.16 2.55 8.14 -2.39 -0.02 2.53 16 33 H 0.42 9.17 8.57 -92.70 -0.79 8.38 16 34 H 0.01 0.36 8.07 -2.39 -0.02 0.34 16 35 H 0.01 0.88 6.93 -2.39 -0.02 0.87 16 36 H 0.25 15.35 8.31 -92.71 -0.77 14.58 16 37 H 0.03 1.25 7.77 -2.39 -0.02 1.23 16 38 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 39 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.04 1.19 8.06 -2.39 -0.02 1.17 16 Total: -1.00 -91.57 344.71 -0.30 -91.86 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: -1.64 Total: 15.13 kcal Atomic # 6 Polarization: 26.01 SS G_CDS: 6.79 Total: 32.80 kcal Atomic # 7 Polarization: -154.67 SS G_CDS: -7.43 Total: -162.10 kcal Atomic # 8 Polarization: -27.58 SS G_CDS: -0.05 Total: -27.62 kcal Atomic # 14 Polarization: 47.90 SS G_CDS: 2.03 Total: 49.93 kcal Total: -91.57 -0.30 -91.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079668803.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.476 kcal (2) G-P(sol) polarization free energy of solvation -91.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds