Wall clock time and date at job start Tue Mar 31 2020 03:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42893 * 113.99673 * 2 1 4 4 H 1.09000 * 110.78564 * 31.78938 * 3 2 1 5 5 C 1.54325 * 110.72271 * 268.54262 * 3 2 1 6 6 N 1.47018 * 107.40412 * 219.52456 * 5 3 2 7 7 C 1.36936 * 125.64999 * 178.82784 * 6 5 3 8 8 H 1.08004 * 120.00405 * 180.02562 * 7 6 5 9 9 C 1.38812 * 120.00093 * 0.02562 * 7 6 5 10 10 N 1.31626 * 119.99909 * 0.02562 * 9 7 6 11 11 Si 1.86793 * 120.00506 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.47109 * 60.00305 * 11 9 7 13 13 H 1.48499 * 109.47578 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.47363 * 300.00729 * 11 9 7 15 15 C 1.47426 * 108.70517 * 358.86539 * 6 5 3 16 16 C 1.54914 * 104.82992 * 24.12623 * 15 6 5 17 17 H 1.09000 * 111.00339 * 81.07133 * 16 15 6 18 18 N 1.46502 * 111.00105 * 204.88119 * 16 15 6 19 19 C 1.34783 * 119.99989 * 273.54475 * 18 16 15 20 20 O 1.21283 * 119.99981 * 0.02562 * 19 18 16 21 21 C 1.50695 * 120.00227 * 180.02562 * 19 18 16 22 22 C 1.50695 * 109.47293 * 179.97438 * 21 19 18 23 23 C 1.34855 * 125.88503 * 85.00350 * 22 21 19 24 24 C 1.40895 * 107.41306 * 180.02562 * 23 22 21 25 25 C 1.34848 * 107.41761 * 359.97438 * 24 23 22 26 26 N 1.36337 * 125.89219 * 264.69258 * 22 21 19 27 27 H 0.96997 * 125.63998 * 359.97438 * 26 22 21 28 28 H 1.08997 * 109.46714 * 59.99917 * 1 2 3 29 29 H 1.08999 * 109.46666 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47041 * 299.99697 * 1 2 3 31 31 H 1.09002 * 109.88192 * 100.02896 * 5 3 2 32 32 H 1.09000 * 109.88128 * 339.01749 * 5 3 2 33 33 H 0.96997 * 120.00493 * 180.02562 * 10 9 7 34 34 H 1.08999 * 110.36956 * 142.96999 * 15 6 5 35 35 H 1.09003 * 110.36599 * 265.28903 * 15 6 5 36 36 H 0.96999 * 120.00092 * 93.54637 * 18 16 15 37 37 H 1.09004 * 109.47342 * 300.00652 * 21 19 18 38 38 H 1.09006 * 109.46955 * 59.99736 * 21 19 18 39 39 H 1.07998 * 126.29495 * 359.97438 * 23 22 21 40 40 H 1.08001 * 126.29332 * 179.97438 * 24 23 22 41 41 H 1.08004 * 125.88970 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3762 2.0111 0.5368 5 6 2.2658 1.7894 -1.4429 6 7 3.5567 2.4929 -1.4486 7 6 4.1551 3.0540 -2.5451 8 1 5.1088 3.5508 -2.4449 9 6 3.5359 2.9842 -3.7855 10 7 2.3733 2.3791 -3.9076 11 14 4.3516 3.7501 -5.2812 12 1 5.6743 3.1129 -5.5043 13 1 3.4933 3.5409 -6.4748 14 1 4.5357 5.2059 -5.0535 15 6 4.1009 2.4935 -0.0785 16 6 3.4384 1.2751 0.6118 17 1 3.9535 0.3505 0.3510 18 7 3.3929 1.4555 2.0650 19 6 4.4462 1.0907 2.8227 20 8 5.4318 0.6135 2.3015 21 6 4.3991 1.2757 4.3175 22 6 5.6909 0.7921 4.9244 23 6 6.8251 1.5113 5.0463 24 6 7.7842 0.6847 5.6643 25 6 7.1994 -0.5079 5.8970 26 7 5.9126 -0.4461 5.4504 27 1 5.2631 -1.1650 5.4969 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.4718 2.4692 -1.7521 32 1 2.3063 0.9351 -2.1187 33 1 1.9407 2.3300 -4.7744 34 1 5.1841 2.3745 -0.1004 35 1 3.8300 3.4150 0.4369 36 1 2.6047 1.8375 2.4818 37 1 4.2616 2.3321 4.5487 38 1 3.5679 0.7027 4.7286 39 1 6.9716 2.5328 4.7279 40 1 8.8009 0.9562 5.9070 41 1 7.6680 -1.3630 6.3615 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082378044.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:56 Heat of formation + Delta-G solvation = -0.546519 kcal Electronic energy + Delta-G solvation = -23511.512289 eV Core-core repulsion = 20007.480808 eV Total energy + Delta-G solvation = -3504.031481 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.15719 -39.52116 -38.06313 -35.89450 -34.00516 -32.21612 -31.44027 -30.90802 -28.80495 -27.42934 -26.21676 -26.10815 -24.11065 -21.18048 -20.59183 -20.51341 -20.12459 -19.85051 -17.74871 -17.23778 -16.74835 -16.28911 -15.51706 -15.11686 -14.78176 -14.49148 -14.24688 -14.01788 -13.70219 -13.55943 -13.30907 -13.19901 -12.76178 -12.61536 -12.25072 -12.17324 -11.89461 -11.69447 -11.48421 -11.23214 -11.01018 -10.78106 -10.75225 -10.16820 -9.98483 -9.78862 -9.71599 -9.09764 -8.81649 -8.76570 -8.58149 -8.02419 -6.88192 -5.72574 -3.07466 2.19419 2.81875 2.99493 3.26688 3.42146 3.46172 3.47127 3.52270 4.11348 4.51884 4.63925 4.94884 4.99637 5.15374 5.17377 5.30789 5.39439 5.48987 5.53000 5.55979 5.64642 5.71161 5.73470 5.85592 5.91874 6.05299 6.16333 6.23649 6.33583 6.54529 6.66502 6.87150 6.99598 7.13240 7.24342 7.47560 7.55320 7.69270 7.72777 7.85199 8.21071 8.44480 9.18420 9.78521 10.41633 11.38864 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.018645 B = 0.003714 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.371620 B = 7538.047272 C = 8736.661039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.379 6.379 3 C 0.056 3.944 4 H 0.063 0.937 5 C 0.163 3.837 6 N -0.600 5.600 7 C -0.229 4.229 8 H 0.081 0.919 9 C -0.007 4.007 10 N -0.924 5.924 11 Si 0.915 3.085 12 H -0.284 1.284 13 H -0.290 1.290 14 H -0.285 1.285 15 C 0.131 3.869 16 C 0.136 3.864 17 H 0.102 0.898 18 N -0.718 5.718 19 C 0.509 3.491 20 O -0.523 6.523 21 C -0.072 4.072 22 C 0.034 3.966 23 C -0.180 4.180 24 C -0.201 4.201 25 C -0.015 4.015 26 N -0.554 5.554 27 H 0.410 0.590 28 H 0.046 0.954 29 H 0.079 0.921 30 H 0.033 0.967 31 H 0.048 0.952 32 H 0.062 0.938 33 H 0.253 0.747 34 H 0.051 0.949 35 H 0.023 0.977 36 H 0.396 0.604 37 H 0.114 0.886 38 H 0.095 0.905 39 H 0.133 0.867 40 H 0.133 0.867 41 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.373 -3.947 19.884 20.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.298 6.298 3 C -0.003 4.003 4 H 0.081 0.919 5 C 0.038 3.962 6 N -0.328 5.328 7 C -0.357 4.357 8 H 0.098 0.902 9 C -0.203 4.203 10 N -0.571 5.571 11 Si 0.745 3.255 12 H -0.210 1.210 13 H -0.216 1.216 14 H -0.211 1.211 15 C 0.004 3.996 16 C 0.031 3.969 17 H 0.120 0.880 18 N -0.370 5.370 19 C 0.294 3.706 20 O -0.398 6.398 21 C -0.112 4.112 22 C -0.079 4.079 23 C -0.205 4.205 24 C -0.226 4.226 25 C -0.146 4.146 26 N -0.148 5.148 27 H 0.246 0.754 28 H 0.065 0.935 29 H 0.097 0.903 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.041 0.959 36 H 0.229 0.771 37 H 0.132 0.868 38 H 0.114 0.886 39 H 0.150 0.850 40 H 0.151 0.849 41 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -0.690 -4.562 19.263 19.808 hybrid contribution -0.557 0.443 -0.656 0.968 sum -1.246 -4.119 18.607 19.098 Atomic orbital electron populations 1.22699 0.81683 1.02003 0.99866 1.87898 1.19149 1.27616 1.95089 1.23864 0.92605 0.84024 0.99839 0.91947 1.21578 0.88613 0.96960 0.89060 1.44248 1.20038 1.65806 1.02715 1.19048 1.02430 1.28873 0.85321 0.90166 1.24815 0.97174 1.00714 0.97633 1.69928 1.16245 1.47585 1.23363 0.86149 0.78383 0.78852 0.82087 1.21028 1.21590 1.21121 1.21827 0.97560 0.93593 0.86648 1.22374 0.95975 1.00974 0.77605 0.88029 1.45949 1.18513 1.64779 1.07724 1.20475 0.83123 0.78273 0.88727 1.90763 1.31662 1.43083 1.74295 1.20134 0.94828 1.04037 0.92240 1.19504 0.96968 0.86327 1.05068 1.20639 0.92765 1.00453 1.06603 1.20861 0.99921 0.94245 1.07541 1.21745 0.84891 1.00476 1.07511 1.41864 1.12054 1.12460 1.48464 0.75379 0.93499 0.90295 0.94845 0.93416 0.92009 0.93637 0.93068 0.95928 0.77094 0.86815 0.88637 0.84954 0.84916 0.82148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.88 101.05 1.10 1.58 16 2 O -0.38 -6.89 10.44 -35.23 -0.37 -7.25 16 3 C 0.06 1.04 3.04 -24.76 -0.08 0.96 16 4 H 0.06 1.01 7.75 -51.93 -0.40 0.61 16 5 C 0.16 3.97 5.14 -3.07 -0.02 3.95 16 6 N -0.60 -15.61 3.39 -170.07 -0.58 -16.19 16 7 C -0.23 -6.48 10.28 -15.06 -0.15 -6.64 16 8 H 0.08 2.20 7.83 -52.48 -0.41 1.79 16 9 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 10 N -0.92 -27.12 10.31 55.49 0.57 -26.55 16 11 Si 0.92 22.33 29.55 -169.99 -5.02 17.30 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 14 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 15 C 0.13 2.84 6.93 -2.53 -0.02 2.83 16 16 C 0.14 2.55 3.05 -65.64 -0.20 2.35 16 17 H 0.10 2.21 7.73 -51.93 -0.40 1.81 16 18 N -0.72 -10.12 5.23 -51.59 -0.27 -10.39 16 19 C 0.51 7.44 7.82 -10.98 -0.09 7.36 16 20 O -0.52 -10.27 15.78 5.55 0.09 -10.18 16 21 C -0.07 -0.71 6.24 -29.04 -0.18 -0.89 16 22 C 0.03 0.41 5.66 -81.79 -0.46 -0.05 16 23 C -0.18 -2.36 10.77 -39.78 -0.43 -2.78 16 24 C -0.20 -2.41 10.86 -39.78 -0.43 -2.85 16 25 C -0.02 -0.16 11.94 -16.75 -0.20 -0.36 16 26 N -0.55 -5.80 6.07 -9.12 -0.06 -5.85 16 27 H 0.41 3.16 8.96 -40.82 -0.37 2.79 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.03 0.38 8.11 -51.93 -0.42 -0.04 16 31 H 0.05 1.25 7.51 -51.93 -0.39 0.86 16 32 H 0.06 1.71 7.29 -51.93 -0.38 1.33 16 33 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 34 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.40 4.18 8.52 -40.82 -0.35 3.83 16 37 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.13 1.64 8.06 -52.49 -0.42 1.21 16 40 H 0.13 1.36 8.06 -52.49 -0.42 0.93 16 41 H 0.16 1.16 8.06 -52.48 -0.42 0.74 16 LS Contribution 345.22 15.07 5.20 5.20 Total: -1.00 -35.54 345.22 -7.74 -43.28 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -6.06 Total: 5.47 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: -1.25 Total: 5.16 kcal Atomic # 7 Polarization: -58.65 SS G_CDS: -0.33 Total: -58.98 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: -0.28 Total: -17.43 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -35.54 -7.74 -43.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082378044.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.734 kcal (2) G-P(sol) polarization free energy of solvation -35.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds