Wall clock time and date at job start Tue Mar 31 2020 03:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42893 * 113.99673 * 2 1 4 4 H 1.09000 * 110.78564 * 31.78938 * 3 2 1 5 5 C 1.54325 * 110.72271 * 268.54262 * 3 2 1 6 6 N 1.47018 * 107.40412 * 219.52456 * 5 3 2 7 7 C 1.36936 * 125.64999 * 178.82784 * 6 5 3 8 8 H 1.08004 * 120.00405 * 180.02562 * 7 6 5 9 9 C 1.38812 * 120.00093 * 0.02562 * 7 6 5 10 10 N 1.31626 * 119.99909 * 0.02562 * 9 7 6 11 11 Si 1.86793 * 120.00506 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.47109 * 60.00305 * 11 9 7 13 13 H 1.48499 * 109.47578 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.47363 * 300.00729 * 11 9 7 15 15 C 1.47426 * 108.70517 * 358.86539 * 6 5 3 16 16 C 1.54914 * 104.82992 * 24.12623 * 15 6 5 17 17 H 1.09000 * 111.00339 * 81.07133 * 16 15 6 18 18 N 1.46502 * 111.00105 * 204.88119 * 16 15 6 19 19 C 1.34783 * 119.99989 * 273.54475 * 18 16 15 20 20 O 1.21283 * 119.99981 * 0.02562 * 19 18 16 21 21 C 1.50695 * 120.00227 * 180.02562 * 19 18 16 22 22 C 1.50695 * 109.47293 * 179.97438 * 21 19 18 23 23 C 1.34855 * 125.88503 * 85.00350 * 22 21 19 24 24 C 1.40895 * 107.41306 * 180.02562 * 23 22 21 25 25 C 1.34848 * 107.41761 * 359.97438 * 24 23 22 26 26 N 1.36337 * 125.89219 * 264.69258 * 22 21 19 27 27 H 0.96997 * 125.63998 * 359.97438 * 26 22 21 28 28 H 1.08997 * 109.46714 * 59.99917 * 1 2 3 29 29 H 1.08999 * 109.46666 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47041 * 299.99697 * 1 2 3 31 31 H 1.09002 * 109.88192 * 100.02896 * 5 3 2 32 32 H 1.09000 * 109.88128 * 339.01749 * 5 3 2 33 33 H 0.96997 * 120.00493 * 180.02562 * 10 9 7 34 34 H 1.08999 * 110.36956 * 142.96999 * 15 6 5 35 35 H 1.09003 * 110.36599 * 265.28903 * 15 6 5 36 36 H 0.96999 * 120.00092 * 93.54637 * 18 16 15 37 37 H 1.09004 * 109.47342 * 300.00652 * 21 19 18 38 38 H 1.09006 * 109.46955 * 59.99736 * 21 19 18 39 39 H 1.07998 * 126.29495 * 359.97438 * 23 22 21 40 40 H 1.08001 * 126.29332 * 179.97438 * 24 23 22 41 41 H 1.08004 * 125.88970 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3762 2.0111 0.5368 5 6 2.2658 1.7894 -1.4429 6 7 3.5567 2.4929 -1.4486 7 6 4.1551 3.0540 -2.5451 8 1 5.1088 3.5508 -2.4449 9 6 3.5359 2.9842 -3.7855 10 7 2.3733 2.3791 -3.9076 11 14 4.3516 3.7501 -5.2812 12 1 5.6743 3.1129 -5.5043 13 1 3.4933 3.5409 -6.4748 14 1 4.5357 5.2059 -5.0535 15 6 4.1009 2.4935 -0.0785 16 6 3.4384 1.2751 0.6118 17 1 3.9535 0.3505 0.3510 18 7 3.3929 1.4555 2.0650 19 6 4.4462 1.0907 2.8227 20 8 5.4318 0.6135 2.3015 21 6 4.3991 1.2757 4.3175 22 6 5.6909 0.7921 4.9244 23 6 6.8251 1.5113 5.0463 24 6 7.7842 0.6847 5.6643 25 6 7.1994 -0.5079 5.8970 26 7 5.9126 -0.4461 5.4504 27 1 5.2631 -1.1650 5.4969 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.4718 2.4692 -1.7521 32 1 2.3063 0.9351 -2.1187 33 1 1.9407 2.3300 -4.7744 34 1 5.1841 2.3745 -0.1004 35 1 3.8300 3.4150 0.4369 36 1 2.6047 1.8375 2.4818 37 1 4.2616 2.3321 4.5487 38 1 3.5679 0.7027 4.7286 39 1 6.9716 2.5328 4.7279 40 1 8.8009 0.9562 5.9070 41 1 7.6680 -1.3630 6.3615 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082378044.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:55 Heat of formation + Delta-G solvation = -27.648138 kcal Electronic energy + Delta-G solvation = -23512.687503 eV Core-core repulsion = 20007.480808 eV Total energy + Delta-G solvation = -3505.206696 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.01796 -40.86112 -39.50767 -37.49591 -35.57091 -33.79036 -32.72267 -31.75415 -30.52819 -28.98192 -27.59320 -27.27140 -25.87061 -22.63492 -22.14100 -21.57136 -21.35437 -20.92943 -19.22554 -18.42306 -18.21230 -17.61479 -17.20273 -16.43382 -16.21338 -15.84889 -15.76925 -15.21179 -15.06453 -14.78697 -14.54681 -14.32359 -14.18706 -13.97785 -13.62207 -13.46553 -13.11966 -13.08078 -12.97280 -12.73806 -12.59847 -12.45225 -12.29809 -12.12441 -11.86913 -11.61414 -11.00660 -10.77356 -10.55015 -10.09726 -9.67770 -8.97767 -8.88410 -7.88614 -5.26758 1.30824 1.44845 1.48792 1.54837 1.68801 2.03726 2.31455 2.46465 2.58909 2.77041 3.30555 3.51915 3.73000 3.83415 3.93684 4.03722 4.20144 4.29256 4.39130 4.46888 4.49528 4.59553 4.61157 4.66124 4.70639 4.83379 4.88852 4.90728 5.01328 5.32930 5.37037 5.39196 5.46221 5.48682 5.64593 6.12794 6.12825 6.26604 6.31000 6.60358 6.86409 7.03909 7.33474 7.68909 8.31259 9.20570 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.018645 B = 0.003714 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.371620 B = 7538.047272 C = 8736.661039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.398 6.398 3 C 0.078 3.922 4 H 0.100 0.900 5 C 0.172 3.828 6 N -0.622 5.622 7 C -0.251 4.251 8 H 0.081 0.919 9 C -0.061 4.061 10 N -0.949 5.949 11 Si 0.982 3.018 12 H -0.280 1.280 13 H -0.290 1.290 14 H -0.273 1.273 15 C 0.131 3.869 16 C 0.154 3.846 17 H 0.067 0.933 18 N -0.701 5.701 19 C 0.509 3.491 20 O -0.579 6.579 21 C -0.058 4.058 22 C 0.020 3.980 23 C -0.211 4.211 24 C -0.231 4.231 25 C -0.011 4.011 26 N -0.549 5.549 27 H 0.424 0.576 28 H 0.032 0.968 29 H 0.100 0.900 30 H 0.068 0.932 31 H 0.022 0.978 32 H 0.016 0.984 33 H 0.249 0.751 34 H 0.030 0.970 35 H 0.044 0.956 36 H 0.419 0.581 37 H 0.143 0.857 38 H 0.136 0.864 39 H 0.128 0.872 40 H 0.141 0.859 41 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.420 -3.927 22.175 22.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.316 6.316 3 C 0.019 3.981 4 H 0.118 0.882 5 C 0.046 3.954 6 N -0.350 5.350 7 C -0.379 4.379 8 H 0.099 0.901 9 C -0.254 4.254 10 N -0.597 5.597 11 Si 0.809 3.191 12 H -0.207 1.207 13 H -0.216 1.216 14 H -0.199 1.199 15 C 0.005 3.995 16 C 0.047 3.953 17 H 0.086 0.914 18 N -0.354 5.354 19 C 0.296 3.704 20 O -0.457 6.457 21 C -0.099 4.099 22 C -0.093 4.093 23 C -0.236 4.236 24 C -0.255 4.255 25 C -0.142 4.142 26 N -0.145 5.145 27 H 0.262 0.738 28 H 0.051 0.949 29 H 0.119 0.881 30 H 0.086 0.914 31 H 0.041 0.959 32 H 0.034 0.966 33 H 0.058 0.942 34 H 0.048 0.952 35 H 0.061 0.939 36 H 0.256 0.744 37 H 0.161 0.839 38 H 0.154 0.846 39 H 0.146 0.854 40 H 0.159 0.841 41 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -1.779 -4.537 21.618 22.161 hybrid contribution -0.205 0.393 -1.340 1.411 sum -1.983 -4.144 20.279 20.793 Atomic orbital electron populations 1.22983 0.79257 1.03878 1.00828 1.87883 1.21814 1.26967 1.94960 1.23505 0.93260 0.85198 0.96126 0.88222 1.21333 0.87320 0.94517 0.92197 1.44522 1.20891 1.65725 1.03883 1.19420 1.02762 1.29086 0.86649 0.90107 1.25672 0.97892 1.01478 1.00376 1.70151 1.17409 1.48587 1.23531 0.85115 0.77275 0.78424 0.78279 1.20657 1.21635 1.19878 1.21928 0.96508 0.95762 0.85320 1.21755 0.95217 0.97911 0.80379 0.91449 1.45681 1.19657 1.64671 1.05409 1.21351 0.81872 0.76544 0.90597 1.90753 1.33781 1.45523 1.75683 1.20190 0.95235 1.06509 0.87916 1.19795 0.97550 0.86809 1.05176 1.20891 0.94007 1.00936 1.07800 1.21165 1.00608 0.95149 1.08621 1.22270 0.84798 1.00835 1.06324 1.41950 1.12402 1.12420 1.47742 0.73789 0.94937 0.88122 0.91367 0.95946 0.96614 0.94164 0.95158 0.93874 0.74351 0.83926 0.84645 0.85417 0.84149 0.79039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 10.88 113.37 1.23 1.90 16 2 O -0.40 -13.95 10.44 -148.98 -1.56 -15.50 16 3 C 0.08 2.85 3.04 31.87 0.10 2.95 16 4 H 0.10 2.91 7.75 -2.39 -0.02 2.89 16 5 C 0.17 8.62 5.14 86.73 0.45 9.07 16 6 N -0.62 -33.28 3.39 -691.97 -2.35 -35.63 16 7 C -0.25 -14.59 10.28 84.03 0.86 -13.73 16 8 H 0.08 4.54 7.83 -2.91 -0.02 4.52 16 9 C -0.06 -3.54 5.49 84.86 0.47 -3.07 16 10 N -0.95 -57.54 10.31 21.65 0.22 -57.32 16 11 Si 0.98 46.66 29.55 68.60 2.03 48.69 16 12 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 13 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 14 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 15 C 0.13 5.75 6.93 86.86 0.60 6.35 16 16 C 0.15 5.72 3.05 46.47 0.14 5.87 16 17 H 0.07 3.01 7.73 -2.39 -0.02 2.99 16 18 N -0.70 -18.00 5.23 -435.53 -2.28 -20.28 16 19 C 0.51 13.88 7.82 87.65 0.69 14.57 16 20 O -0.58 -22.69 15.78 -3.04 -0.05 -22.74 16 21 C -0.06 -0.96 6.24 29.10 0.18 -0.78 16 22 C 0.02 0.45 5.66 41.08 0.23 0.68 16 23 C -0.21 -5.42 10.77 22.14 0.24 -5.19 16 24 C -0.23 -5.40 10.86 22.14 0.24 -5.16 16 25 C -0.01 -0.20 11.94 83.21 0.99 0.79 16 26 N -0.55 -10.24 6.07 -182.77 -1.11 -11.35 16 27 H 0.42 5.31 8.96 -92.71 -0.83 4.48 16 28 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.10 2.11 8.14 -2.39 -0.02 2.10 16 30 H 0.07 1.28 8.11 -2.39 -0.02 1.26 16 31 H 0.02 1.21 7.51 -2.39 -0.02 1.20 16 32 H 0.02 0.91 7.29 -2.39 -0.02 0.90 16 33 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 34 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.42 7.02 8.52 -92.71 -0.79 6.23 16 37 H 0.14 1.58 8.14 -2.39 -0.02 1.57 16 38 H 0.14 1.20 8.14 -2.38 -0.02 1.18 16 39 H 0.13 3.20 8.06 -2.91 -0.02 3.18 16 40 H 0.14 2.85 8.06 -2.91 -0.02 2.83 16 41 H 0.19 2.25 8.06 -2.91 -0.02 2.22 16 Total: -1.00 -82.27 345.22 0.76 -81.51 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: -0.57 Total: 18.38 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: 6.42 Total: 14.24 kcal Atomic # 7 Polarization: -119.07 SS G_CDS: -5.51 Total: -124.58 kcal Atomic # 8 Polarization: -36.64 SS G_CDS: -1.60 Total: -38.24 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.69 kcal Total: -82.27 0.76 -81.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082378044.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.861 kcal (2) G-P(sol) polarization free energy of solvation -82.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds