Wall clock time and date at job start Tue Mar 31 2020 02:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47084 * 2 1 4 4 C 1.50698 * 109.47082 * 119.99979 * 2 1 3 5 5 O 1.21281 * 119.99811 * 120.00193 * 4 2 1 6 6 N 1.34781 * 119.99963 * 299.99896 * 4 2 1 7 7 C 1.46497 * 119.99953 * 180.02562 * 6 4 2 8 8 H 1.08994 * 110.64204 * 31.85978 * 7 6 4 9 9 C 1.54325 * 110.72131 * 268.52482 * 7 6 4 10 10 N 1.47290 * 107.30599 * 219.45483 * 9 7 6 11 11 C 1.36938 * 125.79079 * 178.92205 * 10 9 7 12 12 H 1.07995 * 120.00281 * 0.02562 * 11 10 9 13 13 C 1.38810 * 119.99650 * 180.02562 * 11 10 9 14 14 N 1.31621 * 120.00025 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00113 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47166 * 59.99694 * 15 13 11 17 17 H 1.48493 * 109.47565 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.47135 * 300.00010 * 15 13 11 19 19 C 1.47425 * 108.55742 * 358.92448 * 10 9 7 20 20 C 1.54908 * 104.92961 * 24.15407 * 19 10 9 21 21 H 1.08999 * 111.00647 * 204.85975 * 20 19 10 22 22 O 1.42902 * 111.00279 * 81.00972 * 20 19 10 23 23 N 1.46507 * 109.47243 * 240.00072 * 2 1 3 24 24 C 1.36338 * 125.63085 * 299.69450 * 23 2 1 25 25 C 1.34854 * 108.21574 * 179.83065 * 24 23 2 26 26 C 1.40889 * 107.41549 * 0.42198 * 25 24 23 27 27 C 1.34854 * 107.41888 * 359.73913 * 26 25 24 28 28 H 1.09008 * 109.47285 * 60.00144 * 1 2 3 29 29 H 1.09005 * 109.47084 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47458 * 300.00316 * 1 2 3 31 31 H 0.96996 * 119.99924 * 0.02562 * 6 4 2 32 32 H 1.09004 * 109.88239 * 338.86280 * 9 7 6 33 33 H 1.08999 * 109.88411 * 100.02710 * 9 7 6 34 34 H 0.97001 * 119.99611 * 180.02562 * 14 13 11 35 35 H 1.09002 * 110.36696 * 265.26054 * 19 10 9 36 36 H 1.08995 * 110.36608 * 143.04891 * 19 10 9 37 37 H 0.96703 * 114.00194 * 61.45499 * 22 20 19 38 38 H 1.07998 * 125.89795 * 359.95657 * 24 23 2 39 39 H 1.08001 * 126.29838 * 180.15874 * 25 24 23 40 40 H 1.08002 * 126.29588 * 179.73352 * 26 25 24 41 41 H 1.08003 * 125.89385 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -1.6965 1.1191 6 7 1.7067 -0.2499 2.4546 7 6 2.1955 -0.9402 3.6507 8 1 3.1717 -1.3876 3.4642 9 6 1.1823 -2.0062 4.1183 10 7 1.1491 -1.9634 5.5902 11 6 0.3599 -2.7395 6.3964 12 1 -0.3137 -3.4616 5.9591 13 6 0.4257 -2.5981 7.7757 14 7 1.2463 -1.7178 8.3086 15 14 -0.6503 -3.6573 8.8756 16 1 -0.3339 -5.0900 8.6463 17 1 -0.3928 -3.3155 10.2975 18 1 -2.0794 -3.4090 8.5573 19 6 2.1089 -0.9439 6.0517 20 6 2.2590 0.0321 4.8582 21 1 3.2183 0.5485 4.8940 22 8 1.1780 0.9660 4.8212 23 7 2.0184 -0.6906 -1.1962 24 6 1.7656 -1.9902 -1.5219 25 6 2.3799 -2.2587 -2.6920 26 6 3.0441 -1.0846 -3.0987 27 6 2.8055 -0.1416 -2.1646 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.1488 0.5385 2.5436 32 1 0.1939 -1.7787 3.7189 33 1 1.5015 -2.9932 3.7834 34 1 1.2925 -1.6193 9.2725 35 1 3.0680 -1.4050 6.2876 36 1 1.7161 -0.4200 6.9231 37 1 1.1190 1.5307 5.6040 38 1 1.1737 -2.6843 -0.9438 39 1 2.3688 -3.2017 -3.2183 40 1 3.6356 -0.9622 -3.9940 41 1 3.1740 0.8734 -2.1811 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083409115.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:35 Heat of formation + Delta-G solvation = 6.995145 kcal Electronic energy + Delta-G solvation = -23902.558008 eV Core-core repulsion = 20398.853558 eV Total energy + Delta-G solvation = -3503.704450 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.37173 -39.60887 -37.91667 -34.78805 -34.45306 -33.95510 -31.70868 -29.51455 -28.71984 -28.45549 -27.11598 -24.97884 -24.12676 -21.31732 -20.64770 -20.45219 -19.93448 -19.53817 -17.84987 -17.33212 -16.86500 -16.56910 -15.36428 -15.20561 -14.90679 -14.51904 -14.25686 -13.91580 -13.64315 -13.51404 -13.22086 -12.99563 -12.67302 -12.53569 -12.35964 -12.24506 -12.04234 -11.90049 -11.72972 -11.40798 -11.15888 -10.90576 -10.70491 -10.43234 -10.12270 -9.89928 -9.86159 -9.34297 -8.84271 -8.74297 -8.56669 -8.04773 -6.92226 -5.75232 -3.15488 2.25513 2.53360 2.76435 3.15633 3.29996 3.36798 3.40861 3.42254 4.32373 4.44868 4.54112 4.57687 4.70800 4.96849 5.23810 5.27815 5.29305 5.30720 5.35770 5.43009 5.61091 5.63669 5.70035 5.74993 5.83804 5.96371 6.19650 6.34483 6.37429 6.39761 6.60782 6.82250 7.06538 7.18384 7.28974 7.35543 7.48489 7.61336 7.67297 8.02660 8.24200 8.25288 9.11864 9.72578 10.35792 11.29834 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.029233 B = 0.003471 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.607889 B = 8064.183255 C = 8460.014931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.116 3.884 3 H 0.121 0.879 4 C 0.497 3.503 5 O -0.523 6.523 6 N -0.701 5.701 7 C 0.142 3.858 8 H 0.102 0.898 9 C 0.131 3.869 10 N -0.596 5.596 11 C -0.218 4.218 12 H 0.078 0.922 13 C -0.011 4.011 14 N -0.927 5.927 15 Si 0.918 3.082 16 H -0.285 1.285 17 H -0.290 1.290 18 H -0.285 1.285 19 C 0.125 3.875 20 C 0.068 3.932 21 H 0.059 0.941 22 O -0.563 6.563 23 N -0.431 5.431 24 C 0.021 3.979 25 C -0.213 4.213 26 C -0.199 4.199 27 C -0.022 4.022 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.408 0.592 32 H 0.030 0.970 33 H 0.028 0.972 34 H 0.253 0.747 35 H 0.023 0.977 36 H 0.116 0.884 37 H 0.381 0.619 38 H 0.155 0.845 39 H 0.132 0.868 40 H 0.132 0.868 41 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.654 8.611 -15.858 18.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.009 3.991 3 H 0.139 0.861 4 C 0.280 3.720 5 O -0.399 6.399 6 N -0.353 5.353 7 C 0.037 3.963 8 H 0.120 0.880 9 C 0.005 3.995 10 N -0.323 5.323 11 C -0.347 4.347 12 H 0.096 0.904 13 C -0.206 4.206 14 N -0.576 5.576 15 Si 0.748 3.252 16 H -0.212 1.212 17 H -0.215 1.215 18 H -0.211 1.211 19 C 0.000 4.000 20 C 0.007 3.993 21 H 0.077 0.923 22 O -0.370 6.370 23 N -0.108 5.108 24 C -0.109 4.109 25 C -0.237 4.237 26 C -0.224 4.224 27 C -0.151 4.151 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.102 0.898 31 H 0.245 0.755 32 H 0.048 0.952 33 H 0.046 0.954 34 H 0.064 0.936 35 H 0.041 0.959 36 H 0.134 0.866 37 H 0.230 0.770 38 H 0.173 0.827 39 H 0.150 0.850 40 H 0.150 0.850 41 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 0.888 7.740 -15.971 17.770 hybrid contribution -0.535 0.001 1.253 1.363 sum 0.353 7.742 -14.718 16.633 Atomic orbital electron populations 1.22136 0.91125 1.04365 1.04052 1.21272 0.96902 0.97365 0.83552 0.86126 1.20594 0.81204 0.85365 0.84839 1.90779 1.37249 1.25577 1.86266 1.45779 1.52983 1.31973 1.04562 1.22192 0.98768 0.93178 0.82132 0.88026 1.21626 0.95962 0.95433 0.86527 1.44336 1.46069 1.43057 0.98822 1.19049 1.14879 1.13204 0.87530 0.90430 1.24760 0.99743 0.99711 0.96432 1.69697 1.40143 1.37426 1.10382 0.86099 0.79829 0.79718 0.79552 1.21152 1.21533 1.21125 1.22631 0.93071 0.89485 0.94830 1.23576 0.88485 0.90214 0.97010 0.92322 1.86185 1.52639 1.52055 1.46121 1.43733 1.39838 1.10434 1.16763 1.21680 1.05525 0.85513 0.98172 1.20821 1.05369 0.99245 0.98246 1.20817 1.06468 0.93952 1.01128 1.21735 1.01746 0.99828 0.91785 0.90578 0.90968 0.89763 0.75545 0.95213 0.95422 0.93610 0.95936 0.86624 0.77041 0.82749 0.85001 0.85011 0.82527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.40 9.14 37.16 0.34 -1.06 16 2 C 0.12 1.25 3.36 -69.08 -0.23 1.01 16 3 H 0.12 0.97 8.06 -51.93 -0.42 0.55 16 4 C 0.50 7.23 7.11 -10.98 -0.08 7.15 16 5 O -0.52 -9.84 15.09 5.56 0.08 -9.76 16 6 N -0.70 -10.05 4.97 -52.03 -0.26 -10.31 16 7 C 0.14 2.54 3.20 -66.10 -0.21 2.32 16 8 H 0.10 1.90 7.55 -51.93 -0.39 1.51 16 9 C 0.13 2.83 7.01 -2.92 -0.02 2.81 16 10 N -0.60 -15.00 3.40 -169.86 -0.58 -15.57 16 11 C -0.22 -6.03 10.28 -15.06 -0.15 -6.18 16 12 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 13 C -0.01 -0.32 5.49 -17.43 -0.10 -0.41 16 14 N -0.93 -26.00 10.09 55.49 0.56 -25.44 16 15 Si 0.92 21.77 29.55 -169.99 -5.02 16.75 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 C 0.13 2.85 5.62 -2.53 -0.01 2.84 16 20 C 0.07 1.18 4.29 -24.58 -0.11 1.07 16 21 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 22 O -0.56 -8.94 12.24 -35.23 -0.43 -9.37 16 23 N -0.43 -5.42 2.40 -111.25 -0.27 -5.69 16 24 C 0.02 0.29 9.56 -16.75 -0.16 0.13 16 25 C -0.21 -2.79 10.86 -39.78 -0.43 -3.22 16 26 C -0.20 -2.43 10.86 -39.78 -0.43 -2.86 16 27 C -0.02 -0.26 11.39 -16.75 -0.19 -0.45 16 28 H 0.08 0.57 8.14 -51.92 -0.42 0.15 16 29 H 0.07 0.72 7.92 -51.93 -0.41 0.31 16 30 H 0.08 0.65 7.56 -51.93 -0.39 0.26 16 31 H 0.41 5.09 7.01 -40.82 -0.29 4.80 16 32 H 0.03 0.65 8.03 -51.93 -0.42 0.23 16 33 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.25 6.92 8.31 -40.82 -0.34 6.59 16 35 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.12 2.90 5.86 -51.93 -0.30 2.59 16 37 H 0.38 4.98 9.11 45.56 0.42 5.39 16 38 H 0.16 2.06 8.06 -52.49 -0.42 1.64 16 39 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 40 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 41 H 0.16 1.35 8.06 -52.48 -0.42 0.93 16 LS Contribution 339.27 15.07 5.11 5.11 Total: -1.00 -33.04 339.27 -7.73 -40.77 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -5.14 Total: 10.37 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: -1.79 Total: 3.14 kcal Atomic # 7 Polarization: -56.47 SS G_CDS: -0.54 Total: -57.01 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: -0.35 Total: -19.13 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.04 -7.73 -40.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083409115.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.765 kcal (2) G-P(sol) polarization free energy of solvation -33.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds