Wall clock time and date at job start Tue Mar 31 2020 02:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47084 * 2 1 4 4 C 1.50698 * 109.47082 * 119.99979 * 2 1 3 5 5 O 1.21281 * 119.99811 * 120.00193 * 4 2 1 6 6 N 1.34781 * 119.99963 * 299.99896 * 4 2 1 7 7 C 1.46497 * 119.99953 * 180.02562 * 6 4 2 8 8 H 1.08994 * 110.64204 * 31.85978 * 7 6 4 9 9 C 1.54325 * 110.72131 * 268.52482 * 7 6 4 10 10 N 1.47290 * 107.30599 * 219.45483 * 9 7 6 11 11 C 1.36938 * 125.79079 * 178.92205 * 10 9 7 12 12 H 1.07995 * 120.00281 * 0.02562 * 11 10 9 13 13 C 1.38810 * 119.99650 * 180.02562 * 11 10 9 14 14 N 1.31621 * 120.00025 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00113 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47166 * 59.99694 * 15 13 11 17 17 H 1.48493 * 109.47565 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.47135 * 300.00010 * 15 13 11 19 19 C 1.47425 * 108.55742 * 358.92448 * 10 9 7 20 20 C 1.54908 * 104.92961 * 24.15407 * 19 10 9 21 21 H 1.08999 * 111.00647 * 204.85975 * 20 19 10 22 22 O 1.42902 * 111.00279 * 81.00972 * 20 19 10 23 23 N 1.46507 * 109.47243 * 240.00072 * 2 1 3 24 24 C 1.36338 * 125.63085 * 299.69450 * 23 2 1 25 25 C 1.34854 * 108.21574 * 179.83065 * 24 23 2 26 26 C 1.40889 * 107.41549 * 0.42198 * 25 24 23 27 27 C 1.34854 * 107.41888 * 359.73913 * 26 25 24 28 28 H 1.09008 * 109.47285 * 60.00144 * 1 2 3 29 29 H 1.09005 * 109.47084 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47458 * 300.00316 * 1 2 3 31 31 H 0.96996 * 119.99924 * 0.02562 * 6 4 2 32 32 H 1.09004 * 109.88239 * 338.86280 * 9 7 6 33 33 H 1.08999 * 109.88411 * 100.02710 * 9 7 6 34 34 H 0.97001 * 119.99611 * 180.02562 * 14 13 11 35 35 H 1.09002 * 110.36696 * 265.26054 * 19 10 9 36 36 H 1.08995 * 110.36608 * 143.04891 * 19 10 9 37 37 H 0.96703 * 114.00194 * 61.45499 * 22 20 19 38 38 H 1.07998 * 125.89795 * 359.95657 * 24 23 2 39 39 H 1.08001 * 126.29838 * 180.15874 * 25 24 23 40 40 H 1.08002 * 126.29588 * 179.73352 * 26 25 24 41 41 H 1.08003 * 125.89385 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -1.6965 1.1191 6 7 1.7067 -0.2499 2.4546 7 6 2.1955 -0.9402 3.6507 8 1 3.1717 -1.3876 3.4642 9 6 1.1823 -2.0062 4.1183 10 7 1.1491 -1.9634 5.5902 11 6 0.3599 -2.7395 6.3964 12 1 -0.3137 -3.4616 5.9591 13 6 0.4257 -2.5981 7.7757 14 7 1.2463 -1.7178 8.3086 15 14 -0.6503 -3.6573 8.8756 16 1 -0.3339 -5.0900 8.6463 17 1 -0.3928 -3.3155 10.2975 18 1 -2.0794 -3.4090 8.5573 19 6 2.1089 -0.9439 6.0517 20 6 2.2590 0.0321 4.8582 21 1 3.2183 0.5485 4.8940 22 8 1.1780 0.9660 4.8212 23 7 2.0184 -0.6906 -1.1962 24 6 1.7656 -1.9902 -1.5219 25 6 2.3799 -2.2587 -2.6920 26 6 3.0441 -1.0846 -3.0987 27 6 2.8055 -0.1416 -2.1646 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.1488 0.5385 2.5436 32 1 0.1939 -1.7787 3.7189 33 1 1.5015 -2.9932 3.7834 34 1 1.2925 -1.6193 9.2725 35 1 3.0680 -1.4050 6.2876 36 1 1.7161 -0.4200 6.9231 37 1 1.1190 1.5307 5.6040 38 1 1.1737 -2.6843 -0.9438 39 1 2.3688 -3.2017 -3.2183 40 1 3.6356 -0.9622 -3.9940 41 1 3.1740 0.8734 -2.1811 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083409115.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:34 Heat of formation + Delta-G solvation = -17.017721 kcal Electronic energy + Delta-G solvation = -23903.599284 eV Core-core repulsion = 20398.853558 eV Total energy + Delta-G solvation = -3504.745726 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -42.33156 -40.87474 -39.38493 -36.36093 -35.64485 -35.16287 -33.53423 -30.67288 -30.02874 -29.56291 -28.73074 -26.59499 -25.35140 -22.66839 -22.19270 -21.49395 -21.28382 -20.58636 -19.29208 -18.64069 -18.30140 -17.76541 -16.88872 -16.63234 -16.35301 -15.92764 -15.71635 -14.96423 -14.92564 -14.69580 -14.46426 -14.37327 -14.27822 -13.63509 -13.39443 -13.27212 -13.21938 -13.06845 -12.95706 -12.94364 -12.73881 -12.61208 -12.29962 -12.18150 -11.92500 -11.85489 -11.08703 -10.89539 -10.74647 -10.18786 -9.51582 -8.98947 -8.93478 -7.82928 -5.26471 1.27242 1.39742 1.45972 1.48241 1.54632 1.83423 2.20236 2.22573 2.47381 3.14233 3.28176 3.44980 3.65896 3.79057 3.81196 3.82594 3.91488 4.14171 4.26825 4.40892 4.45413 4.56251 4.63100 4.70383 4.76306 4.81341 4.81757 4.90868 5.08246 5.30408 5.39183 5.42348 5.44208 5.45960 5.68465 6.13513 6.22767 6.31967 6.39788 6.57161 6.86426 7.06134 7.11819 7.70225 8.33059 9.18774 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.029233 B = 0.003471 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.607889 B = 8064.183255 C = 8460.014931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.122 3.878 3 H 0.161 0.839 4 C 0.497 3.503 5 O -0.570 6.570 6 N -0.688 5.688 7 C 0.155 3.845 8 H 0.093 0.907 9 C 0.132 3.868 10 N -0.616 5.616 11 C -0.244 4.244 12 H 0.073 0.927 13 C -0.058 4.058 14 N -0.944 5.944 15 Si 0.980 3.020 16 H -0.283 1.283 17 H -0.289 1.289 18 H -0.277 1.277 19 C 0.124 3.876 20 C 0.093 3.907 21 H 0.092 0.908 22 O -0.561 6.561 23 N -0.436 5.436 24 C -0.006 4.006 25 C -0.226 4.226 26 C -0.217 4.217 27 C -0.019 4.019 28 H 0.095 0.905 29 H 0.053 0.947 30 H 0.099 0.901 31 H 0.421 0.579 32 H 0.028 0.972 33 H 0.007 0.993 34 H 0.250 0.750 35 H -0.002 1.002 36 H 0.093 0.907 37 H 0.397 0.603 38 H 0.145 0.855 39 H 0.138 0.862 40 H 0.150 0.850 41 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.316 10.809 -16.869 20.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.016 3.984 3 H 0.178 0.822 4 C 0.282 3.718 5 O -0.448 6.448 6 N -0.340 5.340 7 C 0.048 3.952 8 H 0.111 0.889 9 C 0.005 3.995 10 N -0.342 5.342 11 C -0.372 4.372 12 H 0.091 0.909 13 C -0.251 4.251 14 N -0.594 5.594 15 Si 0.808 3.192 16 H -0.210 1.210 17 H -0.214 1.214 18 H -0.203 1.203 19 C -0.001 4.001 20 C 0.032 3.968 21 H 0.110 0.890 22 O -0.369 6.369 23 N -0.113 5.113 24 C -0.136 4.136 25 C -0.251 4.251 26 C -0.242 4.242 27 C -0.147 4.147 28 H 0.114 0.886 29 H 0.072 0.928 30 H 0.118 0.882 31 H 0.260 0.740 32 H 0.046 0.954 33 H 0.025 0.975 34 H 0.060 0.940 35 H 0.016 0.984 36 H 0.111 0.889 37 H 0.247 0.753 38 H 0.163 0.837 39 H 0.156 0.844 40 H 0.168 0.832 41 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 0.527 9.982 -17.000 19.721 hybrid contribution -0.423 -0.718 1.547 1.757 sum 0.103 9.265 -15.453 18.018 Atomic orbital electron populations 1.22145 0.89540 1.03735 1.05746 1.21457 0.97955 0.98157 0.80802 0.82211 1.21329 0.80034 0.84699 0.85709 1.90769 1.39369 1.27744 1.86924 1.45584 1.52945 1.31935 1.03576 1.21793 0.97156 0.92462 0.83774 0.88945 1.21673 0.96939 0.95919 0.84922 1.44595 1.46033 1.43419 1.00188 1.19345 1.15512 1.13918 0.88464 0.90881 1.25535 1.01069 1.01015 0.97504 1.69921 1.40977 1.38245 1.10241 0.85135 0.78480 0.78047 0.77533 1.20972 1.21437 1.20259 1.22539 0.91113 0.89841 0.96629 1.23237 0.90394 0.89438 0.93709 0.89000 1.86151 1.52140 1.51628 1.47011 1.43911 1.39972 1.10094 1.17317 1.21714 1.06623 0.86531 0.98744 1.21114 1.05436 1.00184 0.98336 1.21155 1.06982 0.93740 1.02306 1.22345 1.00366 1.01114 0.90876 0.88639 0.92806 0.88250 0.73981 0.95369 0.97542 0.94003 0.98449 0.88887 0.75269 0.83718 0.84389 0.83233 0.79103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 9.14 71.98 0.66 -1.64 16 2 C 0.12 2.28 3.36 44.24 0.15 2.43 16 3 H 0.16 1.78 8.06 -2.38 -0.02 1.76 16 4 C 0.50 13.69 7.11 87.66 0.62 14.32 16 5 O -0.57 -21.40 15.09 -3.03 -0.05 -21.44 16 6 N -0.69 -18.34 4.97 -436.93 -2.17 -20.51 16 7 C 0.15 5.39 3.20 46.18 0.15 5.53 16 8 H 0.09 3.45 7.55 -2.39 -0.02 3.43 16 9 C 0.13 5.78 7.01 86.68 0.61 6.39 16 10 N -0.62 -31.60 3.40 -691.31 -2.35 -33.95 16 11 C -0.24 -13.72 10.28 84.03 0.86 -12.86 16 12 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 13 C -0.06 -3.24 5.49 84.86 0.47 -2.77 16 14 N -0.94 -53.70 10.09 21.65 0.22 -53.48 16 15 Si 0.98 45.01 29.55 68.60 2.03 47.04 16 16 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 17 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 18 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 19 C 0.12 5.71 5.62 86.85 0.49 6.20 16 20 C 0.09 3.08 4.29 31.98 0.14 3.22 16 21 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 22 O -0.56 -16.30 12.24 -148.98 -1.82 -18.12 16 23 N -0.44 -10.14 2.40 -505.90 -1.22 -11.36 16 24 C -0.01 -0.17 9.56 83.21 0.80 0.63 16 25 C -0.23 -5.88 10.86 22.14 0.24 -5.64 16 26 C -0.22 -4.95 10.86 22.14 0.24 -4.71 16 27 C -0.02 -0.38 11.39 83.22 0.95 0.57 16 28 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 29 H 0.05 1.02 7.92 -2.38 -0.02 1.00 16 30 H 0.10 1.19 7.56 -2.39 -0.02 1.17 16 31 H 0.42 9.13 7.01 -92.71 -0.65 8.48 16 32 H 0.03 1.23 8.03 -2.38 -0.02 1.22 16 33 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 34 H 0.25 13.81 8.31 -92.71 -0.77 13.04 16 35 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 36 H 0.09 4.72 5.86 -2.39 -0.01 4.71 16 37 H 0.40 9.28 9.11 -74.06 -0.67 8.60 16 38 H 0.15 4.07 8.06 -2.91 -0.02 4.05 16 39 H 0.14 3.20 8.06 -2.91 -0.02 3.17 16 40 H 0.15 2.72 8.06 -2.91 -0.02 2.69 16 41 H 0.19 2.44 8.06 -2.91 -0.02 2.42 16 Total: -1.00 -73.47 339.27 0.73 -72.75 By element: Atomic # 1 Polarization: 27.68 SS G_CDS: -0.28 Total: 27.41 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: 6.36 Total: 11.67 kcal Atomic # 7 Polarization: -113.78 SS G_CDS: -5.52 Total: -119.30 kcal Atomic # 8 Polarization: -37.70 SS G_CDS: -1.87 Total: -39.56 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -73.47 0.73 -72.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083409115.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.729 kcal (2) G-P(sol) polarization free energy of solvation -73.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds