Wall clock time and date at job start Tue Mar 31 2020 03:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86806 * 119.99931 * 2 1 4 4 H 1.48489 * 109.47147 * 269.99852 * 3 2 1 5 5 H 1.48497 * 109.46859 * 30.00199 * 3 2 1 6 6 H 1.48499 * 109.47168 * 149.99794 * 3 2 1 7 7 C 1.38813 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99714 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99838 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99810 * 179.97438 * 9 7 2 11 11 H 1.08992 * 109.47276 * 35.00206 * 10 9 7 12 12 C 1.52996 * 109.46998 * 274.99659 * 10 9 7 13 13 C 1.53000 * 109.47328 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47060 * 60.00126 * 13 12 10 15 15 C 1.53006 * 109.47127 * 300.00449 * 14 13 12 16 16 C 1.52997 * 109.47164 * 59.99836 * 15 14 13 17 17 H 1.09001 * 109.47375 * 59.99966 * 16 15 14 18 18 N 1.46496 * 109.46941 * 179.97438 * 16 15 14 19 19 C 1.34774 * 120.00256 * 275.00029 * 18 16 15 20 20 O 1.21277 * 120.00311 * 359.97438 * 19 18 16 21 21 C 1.50706 * 119.99740 * 180.02562 * 19 18 16 22 22 N 1.46498 * 109.46741 * 179.97438 * 21 19 18 23 23 N 1.28604 * 124.61900 * 269.69480 * 22 21 19 24 24 C 1.31379 * 108.71947 * 179.83062 * 23 22 21 25 25 C 1.39678 * 105.89855 * 0.41692 * 24 23 22 26 26 N 1.28603 * 124.62065 * 89.99690 * 22 21 19 27 27 H 0.96998 * 120.00493 * 0.02562 * 1 2 3 28 28 H 0.96996 * 120.00484 * 359.97438 * 9 7 2 29 29 H 1.09004 * 109.47368 * 60.00227 * 12 10 9 30 30 H 1.09001 * 109.47372 * 300.00383 * 12 10 9 31 31 H 1.09002 * 109.47398 * 180.02562 * 13 12 10 32 32 H 1.09001 * 109.47194 * 300.00476 * 13 12 10 33 33 H 1.08998 * 109.47533 * 59.99948 * 14 13 12 34 34 H 1.08996 * 109.47853 * 180.02562 * 14 13 12 35 35 H 1.09001 * 109.47002 * 299.99574 * 15 14 13 36 36 H 1.09000 * 109.47050 * 179.97438 * 15 14 13 37 37 H 0.97011 * 120.00086 * 95.00096 * 18 16 15 38 38 H 1.09003 * 109.46831 * 299.99538 * 21 19 18 39 39 H 1.08997 * 109.47647 * 60.00143 * 21 19 18 40 40 H 1.07997 * 127.05441 * 180.16218 * 24 23 22 41 41 H 1.07999 * 127.04759 * 179.77142 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4403 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9687 -3.5505 0.5900 12 6 2.4219 -4.0356 -1.4365 13 6 3.1864 -5.3609 -1.4366 14 6 2.3088 -6.4559 -0.8272 15 6 1.9449 -6.0771 0.6099 16 6 1.1804 -4.7518 0.6099 17 1 0.2697 -4.8576 0.0204 18 7 0.8315 -4.3895 1.9858 19 6 -0.2870 -4.8861 2.5505 20 8 -1.0049 -5.6326 1.9195 21 6 -0.6462 -4.5127 3.9657 22 7 -1.8963 -5.1765 4.3435 23 7 -3.0688 -4.6745 4.1785 24 6 -3.9606 -5.5318 4.6211 25 6 -3.2356 -6.6280 5.0942 26 7 -1.9706 -6.3381 4.8903 27 1 -0.4851 0.8400 -0.0004 28 1 0.3556 -2.3881 0.0005 29 1 3.0469 -3.2552 -1.8709 30 1 1.5112 -4.1418 -2.0259 31 1 3.4460 -5.6305 -2.4603 32 1 4.0971 -5.2551 -0.8470 33 1 1.3980 -6.5618 -1.4166 34 1 2.8534 -7.4001 -0.8268 35 1 2.8555 -5.9713 1.1994 36 1 1.3192 -6.8571 1.0439 37 1 1.4054 -3.7920 2.4905 38 1 0.1512 -4.8290 4.6384 39 1 -0.7733 -3.4325 4.0355 40 1 -5.0338 -5.4117 4.6230 41 1 -3.6336 -7.5294 5.5365 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085212210.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:48 Heat of formation + Delta-G solvation = 77.311900 kcal Electronic energy + Delta-G solvation = -23860.009666 eV Core-core repulsion = 20391.647130 eV Total energy + Delta-G solvation = -3468.362536 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.45720 -39.84871 -37.93899 -34.11355 -33.88601 -33.65987 -32.32788 -31.20507 -29.79234 -28.33707 -27.29206 -23.78505 -22.85048 -22.81290 -21.53349 -21.10916 -20.26837 -19.58074 -17.73151 -17.45665 -17.06538 -15.91352 -15.69848 -15.54921 -14.93441 -14.65124 -14.37873 -14.08691 -13.91068 -13.68068 -13.45566 -13.01357 -12.72052 -12.61172 -12.15068 -12.05435 -11.57041 -11.13740 -10.96409 -10.90952 -10.80787 -10.70818 -10.63339 -10.38660 -10.23896 -10.21406 -10.07029 -9.78625 -9.70425 -9.19490 -8.96842 -8.74029 -7.05063 -5.83098 -3.13693 1.82416 2.22772 2.56508 2.67671 3.37345 3.39141 3.43255 3.45374 4.22157 4.50461 4.68984 4.84584 4.94261 5.00761 5.08941 5.14142 5.24059 5.37329 5.46025 5.47419 5.65976 5.75161 5.83476 5.89423 5.92480 6.04927 6.06925 6.22331 6.25656 6.39461 6.41639 6.42969 6.52940 6.65988 6.76167 6.82614 7.01013 7.62352 7.67879 8.32276 8.34103 8.40495 9.45540 10.01079 10.36304 11.38623 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.012520 B = 0.004898 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.861028 B = 5715.335296 C = 7564.459174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.009 4.009 3 Si 0.905 3.095 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.244 4.244 8 H 0.070 0.930 9 N -0.722 5.722 10 C 0.174 3.826 11 H 0.052 0.948 12 C -0.133 4.133 13 C -0.119 4.119 14 C -0.114 4.114 15 C -0.124 4.124 16 C 0.143 3.857 17 H 0.084 0.916 18 N -0.699 5.699 19 C 0.504 3.496 20 O -0.531 6.531 21 C 0.120 3.880 22 N -0.139 5.139 23 N -0.274 5.274 24 C -0.030 4.030 25 C -0.030 4.030 26 N -0.284 5.284 27 H 0.256 0.744 28 H 0.385 0.615 29 H 0.066 0.934 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.406 0.594 38 H 0.134 0.866 39 H 0.141 0.859 40 H 0.196 0.804 41 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.657 -12.883 7.956 15.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.206 4.206 3 Si 0.736 3.264 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.375 4.375 8 H 0.088 0.912 9 N -0.363 5.363 10 C 0.063 3.937 11 H 0.070 0.930 12 C -0.174 4.174 13 C -0.158 4.158 14 C -0.152 4.152 15 C -0.163 4.163 16 C 0.038 3.962 17 H 0.103 0.897 18 N -0.350 5.350 19 C 0.287 3.713 20 O -0.407 6.407 21 C -0.004 4.004 22 N -0.039 5.039 23 N -0.115 5.115 24 C -0.213 4.213 25 C -0.213 4.213 26 N -0.125 5.125 27 H 0.066 0.934 28 H 0.219 0.781 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.241 0.759 38 H 0.152 0.848 39 H 0.159 0.841 40 H 0.213 0.787 41 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 1.444 -12.603 7.169 14.571 hybrid contribution -0.485 0.858 0.326 1.038 sum 0.959 -11.745 7.495 13.965 Atomic orbital electron populations 1.69666 1.05100 1.25766 1.57065 1.24741 0.95424 0.97636 1.02752 0.86239 0.78622 0.84005 0.77567 1.21739 1.21817 1.20771 1.19193 0.90912 0.83958 1.43416 0.91163 1.42432 1.05816 0.99471 1.88604 1.20465 0.93867 0.85688 0.93683 0.93007 1.22224 1.00003 0.95574 0.99627 1.21583 0.98507 0.95630 1.00040 1.21470 0.99947 0.98099 0.95672 1.21872 1.00001 0.97091 0.97334 1.21357 0.99173 0.94221 0.81489 0.89742 1.45763 1.24512 1.48981 1.15708 1.20281 0.81731 0.81297 0.87969 1.90754 1.50382 1.36085 1.63505 1.21756 0.82218 1.00186 0.96272 1.47335 1.05555 1.10119 1.40880 1.74133 0.91417 1.26994 1.18955 1.24775 1.00893 0.92295 1.03319 1.24728 0.88549 1.02032 1.05984 1.74001 1.23248 1.01113 1.14140 0.93415 0.78126 0.91500 0.92456 0.92629 0.92331 0.91987 0.92308 0.91879 0.91984 0.75918 0.84778 0.84148 0.78693 0.78746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.17 13.06 55.49 0.72 -26.45 16 2 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 3 Si 0.90 21.52 29.55 -169.99 -5.02 16.50 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 7 C -0.24 -6.29 9.93 -15.06 -0.15 -6.44 16 8 H 0.07 1.76 7.83 -52.48 -0.41 1.35 16 9 N -0.72 -16.72 4.95 -53.43 -0.26 -16.99 16 10 C 0.17 3.13 2.30 -67.93 -0.16 2.98 16 11 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 12 C -0.13 -2.25 5.50 -26.73 -0.15 -2.39 16 13 C -0.12 -1.59 5.92 -26.73 -0.16 -1.74 16 14 C -0.11 -1.46 5.92 -26.73 -0.16 -1.61 16 15 C -0.12 -1.71 5.49 -26.73 -0.15 -1.85 16 16 C 0.14 2.33 1.97 -67.93 -0.13 2.20 16 17 H 0.08 1.63 7.58 -51.93 -0.39 1.23 16 18 N -0.70 -10.55 4.91 -53.81 -0.26 -10.81 16 19 C 0.50 8.14 7.86 -10.98 -0.09 8.05 16 20 O -0.53 -10.77 16.09 5.56 0.09 -10.68 16 21 C 0.12 1.55 7.02 -5.19 -0.04 1.51 16 22 N -0.14 -2.13 3.44 -11.66 -0.04 -2.17 16 23 N -0.27 -4.40 12.05 30.67 0.37 -4.03 16 24 C -0.03 -0.37 12.20 -17.21 -0.21 -0.58 16 25 C -0.03 -0.36 12.20 -17.21 -0.21 -0.57 16 26 N -0.28 -4.20 12.05 30.67 0.37 -3.84 16 27 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 28 H 0.38 9.93 7.80 -40.82 -0.32 9.61 16 29 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.41 5.44 8.60 -40.82 -0.35 5.08 16 38 H 0.13 1.23 8.14 -51.93 -0.42 0.80 16 39 H 0.14 1.62 8.14 -51.93 -0.42 1.20 16 40 H 0.20 1.66 8.06 -52.49 -0.42 1.23 16 41 H 0.20 1.49 8.06 -52.49 -0.42 1.06 16 LS Contribution 344.97 15.07 5.20 5.20 Total: -1.00 -34.23 344.97 -6.63 -40.86 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: -6.10 Total: 13.23 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: -1.69 Total: -0.81 kcal Atomic # 7 Polarization: -65.18 SS G_CDS: 0.89 Total: -64.29 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.09 Total: -10.68 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.23 -6.63 -40.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085212210.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.169 kcal (2) G-P(sol) polarization free energy of solvation -34.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds