Wall clock time and date at job start Tue Mar 31 2020 03:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86806 * 119.99931 * 2 1 4 4 H 1.48489 * 109.47147 * 269.99852 * 3 2 1 5 5 H 1.48497 * 109.46859 * 30.00199 * 3 2 1 6 6 H 1.48499 * 109.47168 * 149.99794 * 3 2 1 7 7 C 1.38813 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99714 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99838 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99810 * 179.97438 * 9 7 2 11 11 H 1.08992 * 109.47276 * 35.00206 * 10 9 7 12 12 C 1.52996 * 109.46998 * 274.99659 * 10 9 7 13 13 C 1.53000 * 109.47328 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47060 * 60.00126 * 13 12 10 15 15 C 1.53006 * 109.47127 * 300.00449 * 14 13 12 16 16 C 1.52997 * 109.47164 * 59.99836 * 15 14 13 17 17 H 1.09001 * 109.47375 * 59.99966 * 16 15 14 18 18 N 1.46496 * 109.46941 * 179.97438 * 16 15 14 19 19 C 1.34774 * 120.00256 * 275.00029 * 18 16 15 20 20 O 1.21277 * 120.00311 * 359.97438 * 19 18 16 21 21 C 1.50706 * 119.99740 * 180.02562 * 19 18 16 22 22 N 1.46498 * 109.46741 * 179.97438 * 21 19 18 23 23 N 1.28604 * 124.61900 * 269.69480 * 22 21 19 24 24 C 1.31379 * 108.71947 * 179.83062 * 23 22 21 25 25 C 1.39678 * 105.89855 * 0.41692 * 24 23 22 26 26 N 1.28603 * 124.62065 * 89.99690 * 22 21 19 27 27 H 0.96998 * 120.00493 * 0.02562 * 1 2 3 28 28 H 0.96996 * 120.00484 * 359.97438 * 9 7 2 29 29 H 1.09004 * 109.47368 * 60.00227 * 12 10 9 30 30 H 1.09001 * 109.47372 * 300.00383 * 12 10 9 31 31 H 1.09002 * 109.47398 * 180.02562 * 13 12 10 32 32 H 1.09001 * 109.47194 * 300.00476 * 13 12 10 33 33 H 1.08998 * 109.47533 * 59.99948 * 14 13 12 34 34 H 1.08996 * 109.47853 * 180.02562 * 14 13 12 35 35 H 1.09001 * 109.47002 * 299.99574 * 15 14 13 36 36 H 1.09000 * 109.47050 * 179.97438 * 15 14 13 37 37 H 0.97011 * 120.00086 * 95.00096 * 18 16 15 38 38 H 1.09003 * 109.46831 * 299.99538 * 21 19 18 39 39 H 1.08997 * 109.47647 * 60.00143 * 21 19 18 40 40 H 1.07997 * 127.05441 * 180.16218 * 24 23 22 41 41 H 1.07999 * 127.04759 * 179.77142 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4403 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9687 -3.5505 0.5900 12 6 2.4219 -4.0356 -1.4365 13 6 3.1864 -5.3609 -1.4366 14 6 2.3088 -6.4559 -0.8272 15 6 1.9449 -6.0771 0.6099 16 6 1.1804 -4.7518 0.6099 17 1 0.2697 -4.8576 0.0204 18 7 0.8315 -4.3895 1.9858 19 6 -0.2870 -4.8861 2.5505 20 8 -1.0049 -5.6326 1.9195 21 6 -0.6462 -4.5127 3.9657 22 7 -1.8963 -5.1765 4.3435 23 7 -3.0688 -4.6745 4.1785 24 6 -3.9606 -5.5318 4.6211 25 6 -3.2356 -6.6280 5.0942 26 7 -1.9706 -6.3381 4.8903 27 1 -0.4851 0.8400 -0.0004 28 1 0.3556 -2.3881 0.0005 29 1 3.0469 -3.2552 -1.8709 30 1 1.5112 -4.1418 -2.0259 31 1 3.4460 -5.6305 -2.4603 32 1 4.0971 -5.2551 -0.8470 33 1 1.3980 -6.5618 -1.4166 34 1 2.8534 -7.4001 -0.8268 35 1 2.8555 -5.9713 1.1994 36 1 1.3192 -6.8571 1.0439 37 1 1.4054 -3.7920 2.4905 38 1 0.1512 -4.8290 4.6384 39 1 -0.7733 -3.4325 4.0355 40 1 -5.0338 -5.4117 4.6230 41 1 -3.6336 -7.5294 5.5365 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085212210.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:48 Heat of formation + Delta-G solvation = 51.702497 kcal Electronic energy + Delta-G solvation = -23861.120173 eV Core-core repulsion = 20391.647130 eV Total energy + Delta-G solvation = -3469.473043 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.46542 -41.16556 -39.28605 -35.82857 -35.24946 -34.69732 -33.37151 -33.00853 -30.99917 -29.74281 -28.57747 -25.64414 -24.03606 -23.79116 -22.77925 -22.43084 -21.54142 -20.84501 -19.27313 -18.67155 -18.51643 -17.24024 -16.93783 -16.65368 -16.51472 -15.73646 -15.69535 -15.38195 -15.28297 -15.00885 -14.69031 -14.61121 -14.11217 -13.82075 -13.56315 -13.32297 -12.93187 -12.80258 -12.54611 -12.26021 -12.19626 -12.04537 -12.03111 -11.76945 -11.68748 -11.46132 -11.37801 -11.32351 -11.10227 -10.88489 -10.23176 -10.06330 -9.00451 -7.91081 -5.20514 0.77010 1.25448 1.42513 1.49267 1.50427 1.58361 1.64373 2.20363 2.57295 3.32346 3.41867 3.53309 3.67444 3.80696 3.97357 4.03607 4.10746 4.17737 4.24006 4.29966 4.41712 4.46976 4.57140 4.59332 4.67678 4.92732 4.98801 5.09774 5.12166 5.21939 5.27802 5.28681 5.37087 5.43136 5.49674 5.55385 5.62494 5.69032 6.28220 6.44258 7.09444 7.35325 7.39567 8.08413 8.32577 9.31917 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.012520 B = 0.004898 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.861028 B = 5715.335296 C = 7564.459174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.072 4.072 3 Si 0.967 3.033 4 H -0.294 1.294 5 H -0.302 1.302 6 H -0.264 1.264 7 C -0.231 4.231 8 H 0.082 0.918 9 N -0.732 5.732 10 C 0.173 3.827 11 H 0.066 0.934 12 C -0.129 4.129 13 C -0.109 4.109 14 C -0.111 4.111 15 C -0.114 4.114 16 C 0.150 3.850 17 H 0.047 0.953 18 N -0.693 5.693 19 C 0.502 3.498 20 O -0.578 6.578 21 C 0.121 3.879 22 N -0.156 5.156 23 N -0.321 5.321 24 C -0.028 4.028 25 C -0.024 4.024 26 N -0.308 5.308 27 H 0.248 0.752 28 H 0.368 0.632 29 H 0.052 0.948 30 H 0.037 0.963 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.048 0.952 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.053 0.947 37 H 0.415 0.585 38 H 0.172 0.828 39 H 0.150 0.850 40 H 0.230 0.770 41 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.377 -14.253 9.058 17.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.265 4.265 3 Si 0.797 3.203 4 H -0.222 1.222 5 H -0.229 1.229 6 H -0.188 1.188 7 C -0.362 4.362 8 H 0.100 0.900 9 N -0.371 5.371 10 C 0.065 3.935 11 H 0.084 0.916 12 C -0.170 4.170 13 C -0.147 4.147 14 C -0.149 4.149 15 C -0.153 4.153 16 C 0.045 3.955 17 H 0.066 0.934 18 N -0.343 5.343 19 C 0.287 3.713 20 O -0.458 6.458 21 C -0.002 4.002 22 N -0.055 5.055 23 N -0.161 5.161 24 C -0.211 4.211 25 C -0.207 4.207 26 N -0.149 5.149 27 H 0.056 0.944 28 H 0.199 0.801 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.067 0.933 34 H 0.106 0.894 35 H 0.104 0.896 36 H 0.071 0.929 37 H 0.252 0.748 38 H 0.190 0.810 39 H 0.167 0.833 40 H 0.247 0.753 41 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 3.251 -13.992 8.279 16.579 hybrid contribution -1.062 1.177 -0.029 1.586 sum 2.189 -12.814 8.250 15.397 Atomic orbital electron populations 1.69837 1.06747 1.25763 1.59804 1.25472 0.96061 1.00842 1.04077 0.85233 0.77954 0.80040 0.77077 1.22206 1.22872 1.18843 1.19591 0.91458 0.84751 1.40430 0.90043 1.42608 1.05140 1.00789 1.88594 1.20674 0.93959 0.84090 0.94808 0.91650 1.22107 0.99415 0.97554 0.97943 1.21512 0.98423 0.93190 1.01578 1.21481 0.99726 0.99222 0.94511 1.21800 1.00175 0.94776 0.98520 1.21177 0.97549 0.95187 0.81607 0.93431 1.45722 1.24564 1.48816 1.15218 1.20864 0.81025 0.80330 0.89100 1.90721 1.51760 1.38322 1.64985 1.21916 0.83011 1.00717 0.94561 1.47491 1.05696 1.10523 1.41830 1.74093 0.92484 1.28866 1.20663 1.25482 1.02209 0.91727 1.01673 1.25485 0.87602 1.02934 1.04634 1.73963 1.24824 1.01235 1.14859 0.94354 0.80124 0.92969 0.94449 0.90978 0.90580 0.93268 0.89426 0.89640 0.92859 0.74786 0.81031 0.83272 0.75324 0.74742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.46 13.06 21.65 0.28 -58.17 16 2 C -0.07 -3.97 5.50 84.86 0.47 -3.51 16 3 Si 0.97 44.51 29.55 68.60 2.03 46.54 16 4 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 5 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 6 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 7 C -0.23 -11.86 9.93 84.03 0.83 -11.02 16 8 H 0.08 3.95 7.83 -2.91 -0.02 3.93 16 9 N -0.73 -34.36 4.95 -322.94 -1.60 -35.96 16 10 C 0.17 6.17 2.30 44.99 0.10 6.27 16 11 H 0.07 2.19 8.08 -2.39 -0.02 2.17 16 12 C -0.13 -4.29 5.50 30.59 0.17 -4.12 16 13 C -0.11 -2.61 5.92 30.59 0.18 -2.43 16 14 C -0.11 -2.59 5.92 30.60 0.18 -2.41 16 15 C -0.11 -2.94 5.49 30.60 0.17 -2.77 16 16 C 0.15 4.91 1.97 44.99 0.09 5.00 16 17 H 0.05 1.92 7.58 -2.39 -0.02 1.91 16 18 N -0.69 -20.84 4.91 -442.54 -2.17 -23.01 16 19 C 0.50 16.42 7.86 87.66 0.69 17.11 16 20 O -0.58 -24.24 16.09 -3.02 -0.05 -24.29 16 21 C 0.12 3.09 7.02 85.64 0.60 3.69 16 22 N -0.16 -4.74 3.44 -190.80 -0.66 -5.40 16 23 N -0.32 -10.28 12.05 -56.86 -0.69 -10.96 16 24 C -0.03 -0.66 12.20 85.11 1.04 0.37 16 25 C -0.02 -0.52 12.20 85.11 1.04 0.52 16 26 N -0.31 -8.81 12.05 -56.86 -0.69 -9.50 16 27 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 28 H 0.37 19.71 7.80 -92.71 -0.72 18.98 16 29 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.42 10.79 8.60 -92.70 -0.80 9.99 16 38 H 0.17 2.87 8.14 -2.39 -0.02 2.85 16 39 H 0.15 3.45 8.14 -2.39 -0.02 3.43 16 40 H 0.23 3.39 8.06 -2.91 -0.02 3.37 16 41 H 0.24 2.82 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -76.76 344.97 1.55 -75.21 By element: Atomic # 1 Polarization: 39.31 SS G_CDS: -0.47 Total: 38.84 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: 5.56 Total: 6.70 kcal Atomic # 7 Polarization: -137.49 SS G_CDS: -5.52 Total: -143.00 kcal Atomic # 8 Polarization: -24.24 SS G_CDS: -0.05 Total: -24.29 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -76.76 1.55 -75.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085212210.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.917 kcal (2) G-P(sol) polarization free energy of solvation -76.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds