Wall clock time and date at job start Tue Mar 31 2020 03:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 120.00292 * 2 1 4 4 H 1.48500 * 109.46984 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46637 * 300.00033 * 3 2 1 6 6 H 1.48494 * 109.47131 * 59.99728 * 3 2 1 7 7 C 1.38810 * 119.99704 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00070 * 179.97438 * 7 2 1 9 9 N 1.36944 * 120.00167 * 0.02562 * 7 2 1 10 10 C 1.46501 * 120.00230 * 180.02562 * 9 7 2 11 11 H 1.09005 * 109.47107 * 34.99177 * 10 9 7 12 12 C 1.53000 * 109.46780 * 274.99737 * 10 9 7 13 13 C 1.52999 * 109.47075 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.46835 * 60.00092 * 13 12 10 15 15 C 1.53000 * 109.47214 * 299.99823 * 14 13 12 16 16 C 1.52995 * 109.47489 * 154.99504 * 10 9 7 17 17 H 1.09008 * 109.46716 * 59.99803 * 16 10 9 18 18 N 1.46503 * 109.47026 * 300.00242 * 16 10 9 19 19 C 1.34781 * 119.99736 * 154.99709 * 18 16 10 20 20 O 1.21281 * 120.00025 * 359.97438 * 19 18 16 21 21 C 1.50699 * 119.99810 * 179.97438 * 19 18 16 22 22 N 1.46499 * 109.47293 * 180.02562 * 21 19 18 23 23 C 1.34430 * 126.82421 * 125.01367 * 22 21 19 24 24 N 1.30832 * 108.07308 * 179.72086 * 23 22 21 25 25 C 1.33234 * 109.83313 * 0.40801 * 24 23 22 26 26 N 1.30720 * 108.94479 * 359.58957 * 25 24 23 27 27 H 0.97001 * 119.99819 * 359.97438 * 1 2 3 28 28 H 0.96999 * 119.99557 * 359.97438 * 9 7 2 29 29 H 1.08998 * 109.47305 * 300.00105 * 12 10 9 30 30 H 1.09004 * 109.47215 * 59.99893 * 12 10 9 31 31 H 1.09004 * 109.47417 * 179.97438 * 13 12 10 32 32 H 1.08998 * 109.47434 * 300.00387 * 13 12 10 33 33 H 1.08996 * 109.47367 * 59.99883 * 14 13 12 34 34 H 1.09001 * 109.47562 * 180.02562 * 14 13 12 35 35 H 1.08998 * 109.47305 * 299.99858 * 15 14 13 36 36 H 1.09004 * 109.47215 * 180.02562 * 15 14 13 37 37 H 0.96993 * 119.99842 * 334.99277 * 18 16 10 38 38 H 1.09001 * 109.46907 * 59.99898 * 21 19 18 39 39 H 1.09000 * 109.46864 * 300.00418 * 21 19 18 40 40 H 1.07997 * 125.95719 * 0.02562 * 23 22 21 41 41 H 1.08002 * 125.53021 * 179.85853 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 2.0578 -3.6569 0.0017 11 1 2.9682 -3.5504 0.5917 12 6 2.4227 -4.0363 -1.4349 13 6 3.1882 -5.3611 -1.4338 14 6 2.3110 -6.4564 -0.8241 15 6 1.9461 -6.0769 0.6125 16 6 1.1803 -4.7519 0.6112 17 1 0.2699 -4.8584 0.0211 18 7 0.8309 -4.3885 1.9867 19 6 -0.2876 -4.8851 2.5515 20 8 -1.0051 -5.6324 1.9208 21 6 -0.6468 -4.5117 3.9667 22 7 -1.8963 -5.1764 4.3450 23 6 -2.0953 -5.9718 5.4103 24 7 -3.3444 -6.3610 5.3985 25 6 -3.9689 -5.8442 4.3412 26 7 -3.1244 -5.1085 3.6671 27 1 -0.4850 0.8401 0.0004 28 1 0.3554 -2.3880 0.0005 29 1 1.5125 -4.1428 -2.0250 30 1 3.0480 -3.2562 -1.8692 31 1 3.4478 -5.6317 -2.4573 32 1 4.0985 -5.2543 -0.8438 33 1 1.4007 -6.5632 -1.4140 34 1 2.8564 -7.4001 -0.8228 35 1 2.8564 -5.9701 1.2025 36 1 1.3215 -6.8575 1.0470 37 1 1.4045 -3.7906 2.4910 38 1 -0.7739 -3.4314 4.0363 39 1 0.1506 -4.8278 4.6393 40 1 -1.3547 -6.2386 6.1497 41 1 -5.0060 -6.0034 4.0851 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085414316.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:24 Heat of formation + Delta-G solvation = 59.856745 kcal Electronic energy + Delta-G solvation = -23809.091789 eV Core-core repulsion = 20339.972341 eV Total energy + Delta-G solvation = -3469.119448 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.01895 -39.79253 -37.92039 -34.11567 -33.96214 -33.84917 -31.21745 -31.14770 -29.76926 -28.26173 -27.17674 -23.79379 -22.86100 -21.94308 -21.74492 -21.12774 -20.22489 -19.55201 -17.58257 -17.27780 -16.96196 -15.99074 -15.56116 -15.19226 -14.82441 -14.70156 -14.19512 -13.99879 -13.93767 -13.68082 -13.39762 -13.02504 -12.83823 -12.72174 -12.16706 -12.15256 -11.76803 -11.14525 -10.98891 -10.91190 -10.81949 -10.63772 -10.39267 -10.19376 -10.16125 -9.99685 -9.81142 -9.72750 -9.70144 -9.39343 -8.98763 -8.70603 -7.05635 -5.84213 -3.14732 1.66225 2.19822 2.72062 3.01920 3.34318 3.36581 3.42209 3.44915 4.28048 4.41102 4.49520 4.71628 4.86524 4.99196 5.00482 5.08881 5.23660 5.30106 5.45588 5.46500 5.64990 5.74360 5.82382 5.88946 5.91262 6.05894 6.20665 6.23938 6.39358 6.40484 6.42567 6.47541 6.52304 6.71933 6.77556 6.82336 7.01137 7.61704 7.72463 8.10091 8.32517 8.39499 9.44520 10.00480 10.35523 11.37537 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.012484 B = 0.004816 C = 0.003689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2242.285576 B = 5812.039367 C = 7588.140273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.010 4.010 3 Si 0.904 3.096 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.243 4.243 8 H 0.071 0.929 9 N -0.722 5.722 10 C 0.174 3.826 11 H 0.051 0.949 12 C -0.134 4.134 13 C -0.119 4.119 14 C -0.114 4.114 15 C -0.123 4.123 16 C 0.143 3.857 17 H 0.084 0.916 18 N -0.704 5.704 19 C 0.502 3.498 20 O -0.521 6.521 21 C 0.108 3.892 22 N -0.364 5.364 23 C 0.248 3.752 24 N -0.548 5.548 25 C 0.185 3.815 26 N -0.281 5.281 27 H 0.255 0.745 28 H 0.385 0.615 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.404 0.596 38 H 0.123 0.877 39 H 0.128 0.872 40 H 0.217 0.783 41 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.435 -12.419 8.339 15.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.206 4.206 3 Si 0.735 3.265 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.374 4.374 8 H 0.089 0.911 9 N -0.363 5.363 10 C 0.063 3.937 11 H 0.069 0.931 12 C -0.175 4.175 13 C -0.157 4.157 14 C -0.152 4.152 15 C -0.162 4.162 16 C 0.038 3.962 17 H 0.102 0.898 18 N -0.354 5.354 19 C 0.285 3.715 20 O -0.396 6.396 21 C -0.018 4.018 22 N -0.155 5.155 23 C -0.048 4.048 24 N -0.276 5.276 25 C -0.118 4.118 26 N -0.107 5.107 27 H 0.065 0.935 28 H 0.219 0.781 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.239 0.761 38 H 0.141 0.859 39 H 0.146 0.854 40 H 0.234 0.766 41 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 2.751 -12.567 7.454 14.868 hybrid contribution 0.680 1.360 0.223 1.536 sum 3.431 -11.207 7.677 14.011 Atomic orbital electron populations 1.69684 1.05100 1.25626 1.57165 1.24745 0.95424 0.97646 1.02803 0.86172 0.78766 0.84301 0.77233 1.20570 1.21879 1.21915 1.19240 0.90926 0.83962 1.43246 0.91128 1.42443 1.05838 0.99472 1.88568 1.20458 0.93840 0.85734 0.93647 0.93111 1.22227 0.99990 0.95556 0.99688 1.21582 0.98485 0.95643 1.00029 1.21472 0.99959 0.98068 0.95725 1.21868 0.99899 0.97133 0.97290 1.21331 0.99098 0.94066 0.81721 0.89761 1.45803 1.24748 1.49177 1.15691 1.20247 0.81541 0.81508 0.88189 1.90769 1.49822 1.35741 1.63282 1.21644 0.83227 1.00384 0.96575 1.49985 1.09057 1.36911 1.19549 1.26006 0.95673 0.91433 0.91720 1.70487 1.04838 1.28211 1.24032 1.26004 1.00924 0.94840 0.89990 1.78295 0.90052 1.23641 1.18751 0.93482 0.78107 0.92443 0.91543 0.92642 0.92357 0.91967 0.92358 0.91986 0.92105 0.76137 0.85923 0.85447 0.76646 0.76874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.17 13.06 55.49 0.72 -26.44 16 2 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 3 Si 0.90 21.45 29.55 -169.99 -5.02 16.42 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.24 -6.24 9.93 -15.06 -0.15 -6.39 16 8 H 0.07 1.77 7.83 -52.48 -0.41 1.35 16 9 N -0.72 -16.64 4.95 -53.42 -0.26 -16.91 16 10 C 0.17 3.10 2.29 -67.93 -0.16 2.94 16 11 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 12 C -0.13 -2.24 5.50 -26.73 -0.15 -2.38 16 13 C -0.12 -1.56 5.92 -26.73 -0.16 -1.72 16 14 C -0.11 -1.43 5.92 -26.73 -0.16 -1.59 16 15 C -0.12 -1.63 5.50 -26.71 -0.15 -1.78 16 16 C 0.14 2.28 1.98 -67.91 -0.13 2.15 16 17 H 0.08 1.61 7.58 -51.92 -0.39 1.22 16 18 N -0.70 -10.17 4.91 -53.78 -0.26 -10.43 16 19 C 0.50 7.61 7.83 -10.98 -0.09 7.53 16 20 O -0.52 -10.17 15.40 5.56 0.09 -10.08 16 21 C 0.11 1.19 7.03 -5.19 -0.04 1.15 16 22 N -0.36 -4.86 3.41 -63.81 -0.22 -5.08 16 23 C 0.25 2.76 12.63 -90.65 -1.14 1.61 16 24 N -0.55 -7.40 11.19 -15.83 -0.18 -7.58 16 25 C 0.19 2.60 13.03 -91.81 -1.20 1.40 16 26 N -0.28 -4.65 11.82 29.29 0.35 -4.30 16 27 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 28 H 0.38 9.93 7.80 -40.82 -0.32 9.61 16 29 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.40 5.19 8.60 -40.82 -0.35 4.84 16 38 H 0.12 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.13 0.74 8.09 -51.93 -0.42 0.32 16 40 H 0.22 1.22 8.06 -52.49 -0.42 0.80 16 41 H 0.21 2.22 8.06 -52.49 -0.42 1.80 16 LS Contribution 344.35 15.07 5.19 5.19 Total: -1.00 -35.06 344.35 -9.31 -44.37 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: -6.10 Total: 12.28 kcal Atomic # 6 Polarization: 6.17 SS G_CDS: -3.61 Total: 2.56 kcal Atomic # 7 Polarization: -70.88 SS G_CDS: 0.15 Total: -70.74 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.09 Total: -10.08 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -35.06 -9.31 -44.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085414316.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.225 kcal (2) G-P(sol) polarization free energy of solvation -35.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds