Wall clock time and date at job start Tue Mar 31 2020 03:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 120.00292 * 2 1 4 4 H 1.48500 * 109.46984 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46637 * 300.00033 * 3 2 1 6 6 H 1.48494 * 109.47131 * 59.99728 * 3 2 1 7 7 C 1.38810 * 119.99704 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00070 * 179.97438 * 7 2 1 9 9 N 1.36944 * 120.00167 * 0.02562 * 7 2 1 10 10 C 1.46501 * 120.00230 * 180.02562 * 9 7 2 11 11 H 1.09005 * 109.47107 * 34.99177 * 10 9 7 12 12 C 1.53000 * 109.46780 * 274.99737 * 10 9 7 13 13 C 1.52999 * 109.47075 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.46835 * 60.00092 * 13 12 10 15 15 C 1.53000 * 109.47214 * 299.99823 * 14 13 12 16 16 C 1.52995 * 109.47489 * 154.99504 * 10 9 7 17 17 H 1.09008 * 109.46716 * 59.99803 * 16 10 9 18 18 N 1.46503 * 109.47026 * 300.00242 * 16 10 9 19 19 C 1.34781 * 119.99736 * 154.99709 * 18 16 10 20 20 O 1.21281 * 120.00025 * 359.97438 * 19 18 16 21 21 C 1.50699 * 119.99810 * 179.97438 * 19 18 16 22 22 N 1.46499 * 109.47293 * 180.02562 * 21 19 18 23 23 C 1.34430 * 126.82421 * 125.01367 * 22 21 19 24 24 N 1.30832 * 108.07308 * 179.72086 * 23 22 21 25 25 C 1.33234 * 109.83313 * 0.40801 * 24 23 22 26 26 N 1.30720 * 108.94479 * 359.58957 * 25 24 23 27 27 H 0.97001 * 119.99819 * 359.97438 * 1 2 3 28 28 H 0.96999 * 119.99557 * 359.97438 * 9 7 2 29 29 H 1.08998 * 109.47305 * 300.00105 * 12 10 9 30 30 H 1.09004 * 109.47215 * 59.99893 * 12 10 9 31 31 H 1.09004 * 109.47417 * 179.97438 * 13 12 10 32 32 H 1.08998 * 109.47434 * 300.00387 * 13 12 10 33 33 H 1.08996 * 109.47367 * 59.99883 * 14 13 12 34 34 H 1.09001 * 109.47562 * 180.02562 * 14 13 12 35 35 H 1.08998 * 109.47305 * 299.99858 * 15 14 13 36 36 H 1.09004 * 109.47215 * 180.02562 * 15 14 13 37 37 H 0.96993 * 119.99842 * 334.99277 * 18 16 10 38 38 H 1.09001 * 109.46907 * 59.99898 * 21 19 18 39 39 H 1.09000 * 109.46864 * 300.00418 * 21 19 18 40 40 H 1.07997 * 125.95719 * 0.02562 * 23 22 21 41 41 H 1.08002 * 125.53021 * 179.85853 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 2.0578 -3.6569 0.0017 11 1 2.9682 -3.5504 0.5917 12 6 2.4227 -4.0363 -1.4349 13 6 3.1882 -5.3611 -1.4338 14 6 2.3110 -6.4564 -0.8241 15 6 1.9461 -6.0769 0.6125 16 6 1.1803 -4.7519 0.6112 17 1 0.2699 -4.8584 0.0211 18 7 0.8309 -4.3885 1.9867 19 6 -0.2876 -4.8851 2.5515 20 8 -1.0051 -5.6324 1.9208 21 6 -0.6468 -4.5117 3.9667 22 7 -1.8963 -5.1764 4.3450 23 6 -2.0953 -5.9718 5.4103 24 7 -3.3444 -6.3610 5.3985 25 6 -3.9689 -5.8442 4.3412 26 7 -3.1244 -5.1085 3.6671 27 1 -0.4850 0.8401 0.0004 28 1 0.3554 -2.3880 0.0005 29 1 1.5125 -4.1428 -2.0250 30 1 3.0480 -3.2562 -1.8692 31 1 3.4478 -5.6317 -2.4573 32 1 4.0985 -5.2543 -0.8438 33 1 1.4007 -6.5632 -1.4140 34 1 2.8564 -7.4001 -0.8228 35 1 2.8564 -5.9701 1.2025 36 1 1.3215 -6.8575 1.0470 37 1 1.4045 -3.7906 2.4910 38 1 -0.7739 -3.4314 4.0363 39 1 0.1506 -4.8278 4.6393 40 1 -1.3547 -6.2386 6.1497 41 1 -5.0060 -6.0034 4.0851 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085414316.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:23 Heat of formation + Delta-G solvation = 36.057907 kcal Electronic energy + Delta-G solvation = -23810.123784 eV Core-core repulsion = 20339.972341 eV Total energy + Delta-G solvation = -3470.151443 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.97966 -41.04175 -39.21808 -35.82464 -35.14873 -34.94155 -33.00374 -32.15227 -30.94720 -29.67857 -28.36598 -25.64031 -23.98132 -22.94020 -22.83167 -22.45912 -21.44977 -20.79035 -19.21262 -18.38392 -18.26369 -17.21959 -16.69267 -16.63928 -16.04720 -15.85567 -15.52588 -15.41000 -15.01435 -14.94381 -14.64213 -14.49635 -14.10843 -13.89594 -13.54491 -13.44672 -12.92205 -12.85776 -12.75041 -12.21267 -12.17553 -12.02572 -12.00870 -11.66799 -11.45191 -11.32389 -11.09337 -10.99562 -10.91466 -10.75596 -10.47251 -9.96709 -9.00310 -7.91643 -5.20951 0.73138 1.32559 1.47990 1.49896 1.56921 1.58770 2.04327 2.25085 2.56870 3.41954 3.53893 3.56443 3.69117 3.72613 3.84001 4.06516 4.14265 4.17518 4.25442 4.31629 4.42805 4.43966 4.50595 4.58482 4.69107 4.93951 5.00419 5.15673 5.22838 5.24852 5.28891 5.30200 5.45291 5.49835 5.52764 5.56744 5.66988 5.91386 6.27929 6.57234 7.13817 7.25035 7.34793 8.08600 8.32372 9.31607 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.012484 B = 0.004816 C = 0.003689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2242.285576 B = 5812.039367 C = 7588.140273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.074 4.074 3 Si 0.967 3.033 4 H -0.261 1.261 5 H -0.303 1.303 6 H -0.296 1.296 7 C -0.228 4.228 8 H 0.082 0.918 9 N -0.733 5.733 10 C 0.173 3.827 11 H 0.066 0.934 12 C -0.130 4.130 13 C -0.109 4.109 14 C -0.113 4.113 15 C -0.111 4.111 16 C 0.151 3.849 17 H 0.043 0.957 18 N -0.698 5.698 19 C 0.496 3.504 20 O -0.571 6.571 21 C 0.112 3.888 22 N -0.375 5.375 23 C 0.264 3.736 24 N -0.574 5.574 25 C 0.183 3.817 26 N -0.344 5.344 27 H 0.247 0.753 28 H 0.367 0.633 29 H 0.035 0.965 30 H 0.050 0.950 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.046 0.954 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.054 0.946 37 H 0.414 0.586 38 H 0.125 0.875 39 H 0.190 0.810 40 H 0.272 0.728 41 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.379 -13.633 10.070 18.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.266 4.266 3 Si 0.797 3.203 4 H -0.185 1.185 5 H -0.231 1.231 6 H -0.223 1.223 7 C -0.360 4.360 8 H 0.100 0.900 9 N -0.371 5.371 10 C 0.065 3.935 11 H 0.084 0.916 12 C -0.171 4.171 13 C -0.147 4.147 14 C -0.151 4.151 15 C -0.150 4.150 16 C 0.045 3.955 17 H 0.061 0.939 18 N -0.349 5.349 19 C 0.281 3.719 20 O -0.450 6.450 21 C -0.013 4.013 22 N -0.166 5.166 23 C -0.031 4.031 24 N -0.302 5.302 25 C -0.120 4.120 26 N -0.171 5.171 27 H 0.056 0.944 28 H 0.198 0.802 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.065 0.935 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.072 0.928 37 H 0.250 0.750 38 H 0.143 0.857 39 H 0.207 0.793 40 H 0.287 0.713 41 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 5.776 -13.803 9.195 17.562 hybrid contribution -0.200 1.654 -0.327 1.698 sum 5.575 -12.149 8.868 16.041 Atomic orbital electron populations 1.69857 1.06799 1.25640 1.59997 1.25480 0.96047 1.00884 1.04190 0.85163 0.78548 0.80362 0.76218 1.18546 1.23140 1.22326 1.19636 0.91461 0.84741 1.40113 0.89983 1.42629 1.05127 1.00845 1.88530 1.20676 0.94013 0.84146 0.94695 0.91616 1.22115 0.99309 0.97564 0.98123 1.21509 0.98447 0.93196 1.01520 1.21487 0.99620 0.99173 0.94774 1.21784 1.00174 0.94794 0.98284 1.21111 0.97267 0.95024 0.82060 0.93865 1.45760 1.24982 1.49117 1.15032 1.21008 0.80660 0.80456 0.89726 1.90749 1.51185 1.38104 1.64935 1.21902 0.84042 1.00548 0.94790 1.50089 1.08715 1.37745 1.20015 1.27086 0.95838 0.88963 0.91220 1.70516 1.06199 1.29248 1.24235 1.26480 1.01727 0.93976 0.89770 1.78204 0.91947 1.25809 1.21161 0.94421 0.80201 0.94642 0.93101 0.91148 0.90491 0.93481 0.89444 0.89519 0.92756 0.74975 0.85713 0.79339 0.71257 0.74969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.59 13.06 21.65 0.28 -58.31 16 2 C -0.07 -4.05 5.50 84.86 0.47 -3.59 16 3 Si 0.97 44.32 29.55 68.60 2.03 46.35 16 4 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 5 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 6 H -0.30 -13.62 7.11 99.48 0.71 -12.91 16 7 C -0.23 -11.63 9.93 84.03 0.83 -10.80 16 8 H 0.08 3.95 7.83 -2.91 -0.02 3.93 16 9 N -0.73 -34.15 4.95 -322.93 -1.60 -35.75 16 10 C 0.17 6.06 2.29 44.99 0.10 6.17 16 11 H 0.07 2.14 8.08 -2.38 -0.02 2.12 16 12 C -0.13 -4.29 5.50 30.59 0.17 -4.13 16 13 C -0.11 -2.56 5.92 30.59 0.18 -2.38 16 14 C -0.11 -2.56 5.92 30.59 0.18 -2.37 16 15 C -0.11 -2.73 5.50 30.61 0.17 -2.56 16 16 C 0.15 4.79 1.98 45.00 0.09 4.88 16 17 H 0.04 1.74 7.58 -2.38 -0.02 1.72 16 18 N -0.70 -19.61 4.91 -442.45 -2.17 -21.78 16 19 C 0.50 14.85 7.83 87.66 0.69 15.53 16 20 O -0.57 -22.92 15.40 -3.03 -0.05 -22.97 16 21 C 0.11 2.23 7.03 85.63 0.60 2.83 16 22 N -0.37 -9.52 3.41 -355.81 -1.21 -10.73 16 23 C 0.26 5.17 12.63 180.36 2.28 7.45 16 24 N -0.57 -14.79 11.19 -204.00 -2.28 -17.08 16 25 C 0.18 5.17 13.03 180.77 2.36 7.53 16 26 N -0.34 -11.61 11.82 -61.24 -0.72 -12.33 16 27 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 28 H 0.37 19.68 7.80 -92.71 -0.72 18.96 16 29 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 31 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 32 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.05 1.21 8.14 -2.39 -0.02 1.20 16 34 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 37 H 0.41 9.90 8.60 -92.71 -0.80 9.10 16 38 H 0.13 2.47 8.14 -2.39 -0.02 2.45 16 39 H 0.19 1.29 8.09 -2.39 -0.02 1.27 16 40 H 0.27 1.70 8.06 -2.91 -0.02 1.67 16 41 H 0.23 4.98 8.06 -2.91 -0.02 4.95 16 Total: -1.00 -80.80 344.35 1.92 -78.88 By element: Atomic # 1 Polarization: 35.62 SS G_CDS: -0.47 Total: 35.15 kcal Atomic # 6 Polarization: 10.46 SS G_CDS: 8.11 Total: 18.57 kcal Atomic # 7 Polarization: -148.27 SS G_CDS: -7.71 Total: -155.98 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: -0.05 Total: -22.97 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -80.80 1.92 -78.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085414316.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.939 kcal (2) G-P(sol) polarization free energy of solvation -80.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds