Wall clock time and date at job start Tue Mar 31 2020 03:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.36604 * 126.57830 * 2 1 4 4 C 1.47512 * 125.77014 * 0.02562 * 3 2 1 5 5 O 1.21596 * 120.00176 * 356.03650 * 4 3 2 6 6 N 1.34784 * 120.00018 * 176.03907 * 4 3 2 7 7 C 1.46496 * 119.99792 * 4.65009 * 6 4 3 8 8 C 1.46500 * 119.99882 * 184.65096 * 6 4 3 9 9 C 1.52998 * 109.47178 * 84.12912 * 8 6 4 10 10 H 1.09004 * 112.96340 * 310.94270 * 9 8 6 11 11 C 1.53942 * 113.77093 * 179.26221 * 9 8 6 12 12 C 1.53950 * 86.29407 * 222.09183 * 11 9 8 13 13 N 1.47583 * 113.77031 * 82.62135 * 9 8 6 14 14 C 1.36940 * 134.48925 * 318.92704 * 13 9 8 15 15 H 1.07996 * 120.00328 * 338.19060 * 14 13 9 16 16 C 1.38819 * 119.99737 * 158.18880 * 14 13 9 17 17 N 1.31611 * 120.00090 * 164.48723 * 16 14 13 18 18 Si 1.86802 * 119.99874 * 344.48944 * 16 14 13 19 19 H 1.48502 * 109.47245 * 85.14395 * 18 16 14 20 20 H 1.48501 * 109.47109 * 205.14573 * 18 16 14 21 21 H 1.48505 * 109.47094 * 325.14324 * 18 16 14 22 22 N 1.34406 * 108.45654 * 179.86669 * 3 2 1 23 23 N 1.28763 * 109.51984 * 0.40569 * 22 3 2 24 24 N 1.34815 * 126.58314 * 180.31067 * 2 1 3 25 25 C 1.46499 * 126.59008 * 0.02562 * 24 2 1 26 26 H 1.08996 * 109.47479 * 269.71485 * 1 2 3 27 27 H 1.09010 * 109.47116 * 149.71028 * 1 2 3 28 28 H 1.09004 * 109.47504 * 29.71380 * 1 2 3 29 29 H 1.08997 * 109.47173 * 57.82581 * 7 6 4 30 30 H 1.09002 * 109.47028 * 177.83320 * 7 6 4 31 31 H 1.09006 * 109.46778 * 297.82783 * 7 6 4 32 32 H 1.09001 * 109.47021 * 204.12798 * 8 6 4 33 33 H 1.08998 * 109.47492 * 324.12738 * 8 6 4 34 34 H 1.09001 * 113.74390 * 336.43856 * 11 9 8 35 35 H 1.09001 * 113.74506 * 107.63903 * 11 9 8 36 36 H 1.09000 * 113.77173 * 137.90734 * 12 11 9 37 37 H 1.08997 * 113.76817 * 269.19320 * 12 11 9 38 38 H 0.96997 * 120.00159 * 180.02562 * 17 16 14 39 39 H 1.09006 * 109.47307 * 90.00173 * 25 24 2 40 40 H 1.09009 * 109.46700 * 209.99870 * 25 24 2 41 41 H 1.08998 * 109.47255 * 329.99759 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3210 1.0970 0.0000 4 6 1.8737 2.5027 0.0005 5 8 0.6882 2.7635 -0.0718 6 7 2.7790 3.4979 0.0811 7 6 4.2108 3.1886 0.0654 8 6 2.3311 4.8890 0.1844 9 6 2.0269 5.2195 1.6470 10 1 1.3918 4.4755 2.1279 11 6 1.5629 6.6700 1.8717 12 6 2.4746 6.6639 3.1122 13 7 3.2205 5.5819 2.4356 14 6 4.5027 5.1066 2.5093 15 1 4.7257 4.1017 2.1825 16 6 5.5158 5.9165 3.0039 17 7 6.6661 5.3868 3.3622 18 14 5.2464 7.7583 3.1612 19 1 4.5784 8.0522 4.4545 20 1 6.5562 8.4563 3.1107 21 1 4.3904 8.2306 2.0434 22 7 3.5984 0.6789 0.0030 23 7 3.6298 -0.6083 -0.0038 24 7 2.3104 -1.0825 -0.0059 25 6 1.8863 -2.4848 -0.0140 26 1 -0.3634 -0.0051 1.0276 27 1 -0.3634 -0.8874 -0.5184 28 1 -0.3634 0.8926 -0.5094 29 1 4.4550 2.6446 -0.8470 30 1 4.7832 4.1157 0.1000 31 1 4.4596 2.5755 0.9317 32 1 3.1152 5.5513 -0.1823 33 1 1.4304 5.0261 -0.4140 34 1 1.8867 7.3601 1.0926 35 1 0.5020 6.7603 2.1052 36 1 3.0488 7.5815 3.2401 37 1 1.9716 6.3462 4.0255 38 1 7.3739 5.9526 3.7082 39 1 1.7815 -2.8268 -1.0437 40 1 2.6329 -3.0931 0.4967 41 1 0.9291 -2.5779 0.4990 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085530478.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:00 Heat of formation + Delta-G solvation = 139.756591 kcal Electronic energy + Delta-G solvation = -24347.527312 eV Core-core repulsion = 20881.872581 eV Total energy + Delta-G solvation = -3465.654731 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.19279 -39.34817 -37.94298 -35.28820 -34.55360 -32.35573 -32.20119 -29.34164 -28.36468 -27.55693 -27.45459 -25.90744 -23.68356 -23.08894 -22.24392 -20.95850 -19.47869 -18.93752 -17.27289 -16.97277 -16.42589 -15.90058 -15.74347 -15.30611 -14.85977 -14.35141 -14.16488 -13.78274 -13.51567 -13.38831 -13.15844 -13.12015 -12.88973 -12.71124 -12.34376 -12.26441 -12.01444 -11.62875 -11.39078 -11.22556 -11.05352 -10.78317 -10.76194 -10.38113 -10.23779 -10.19157 -9.68799 -9.56353 -9.27208 -9.05975 -8.61153 -8.06833 -6.97022 -5.86060 -3.19649 1.14713 1.91399 2.02201 3.37755 3.41132 3.49895 3.53818 3.59708 4.23219 4.24977 4.59022 4.61052 4.71084 4.72279 4.74816 4.97280 5.20697 5.33071 5.35763 5.40325 5.58507 5.68290 5.78253 5.81674 5.94049 5.99954 6.12449 6.14581 6.23115 6.34586 6.38483 6.41503 6.48433 6.51672 6.79517 6.95406 7.17568 7.39173 7.83673 8.05593 8.42791 8.51763 8.79863 9.72941 10.43793 11.30509 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.022559 B = 0.004683 C = 0.004121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.894760 B = 5977.332734 C = 6793.071903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.116 3.884 3 C -0.096 4.096 4 C 0.599 3.401 5 O -0.552 6.552 6 N -0.582 5.582 7 C 0.093 3.907 8 C 0.120 3.880 9 C 0.135 3.865 10 H 0.056 0.944 11 C -0.146 4.146 12 C 0.098 3.902 13 N -0.618 5.618 14 C -0.230 4.230 15 H 0.100 0.900 16 C 0.021 3.979 17 N -0.915 5.915 18 Si 0.889 3.111 19 H -0.289 1.289 20 H -0.304 1.304 21 H -0.273 1.273 22 N -0.189 5.189 23 N -0.076 5.076 24 N -0.370 5.370 25 C 0.089 3.911 26 H 0.089 0.911 27 H 0.071 0.929 28 H 0.114 0.886 29 H 0.053 0.947 30 H 0.089 0.911 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.060 0.940 36 H 0.045 0.955 37 H 0.042 0.958 38 H 0.262 0.738 39 H 0.086 0.914 40 H 0.100 0.900 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.396 -11.906 -8.667 19.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.022 4.022 3 C -0.235 4.235 4 C 0.385 3.615 5 O -0.431 6.431 6 N -0.311 5.311 7 C -0.049 4.049 8 C -0.003 4.003 9 C 0.028 3.972 10 H 0.073 0.927 11 C -0.185 4.185 12 C -0.026 4.026 13 N -0.346 5.346 14 C -0.357 4.357 15 H 0.117 0.883 16 C -0.177 4.177 17 N -0.559 5.559 18 Si 0.721 3.279 19 H -0.217 1.217 20 H -0.233 1.233 21 H -0.199 1.199 22 N -0.063 5.063 23 N -0.055 5.055 24 N -0.156 5.156 25 C -0.052 4.052 26 H 0.107 0.893 27 H 0.090 0.910 28 H 0.132 0.868 29 H 0.072 0.928 30 H 0.108 0.892 31 H 0.089 0.911 32 H 0.105 0.895 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.079 0.921 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.072 0.928 39 H 0.105 0.895 40 H 0.118 0.882 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -12.083 -12.251 -8.638 19.254 hybrid contribution -0.779 0.952 0.476 1.319 sum -12.863 -11.299 -8.162 18.967 Atomic orbital electron populations 1.20693 0.84850 1.05248 1.04473 1.21869 0.96096 0.86403 0.97791 1.21276 0.88900 0.95619 1.17723 1.16729 0.85319 0.82519 0.76945 1.90692 1.15970 1.83518 1.52917 1.47574 1.07550 1.06285 1.69671 1.22060 0.78806 1.02514 1.01541 1.21919 1.00443 0.80435 0.97546 1.22654 0.88907 0.94445 0.91239 0.92650 1.23590 0.98255 0.97506 0.99167 1.22829 0.92234 0.93071 0.94500 1.46353 1.06346 1.39259 1.42670 1.18859 0.79929 0.97895 1.38993 0.88264 1.24943 0.95105 0.97630 0.99983 1.69781 1.05394 1.34812 1.45961 0.86771 0.75302 0.87768 0.78038 1.21702 1.23267 1.19938 1.74907 1.18886 1.03391 1.09068 1.82026 0.95787 1.04080 1.23618 1.50274 1.06687 1.07535 1.51060 1.22099 1.02305 0.76464 1.04356 0.89252 0.90997 0.86804 0.92798 0.89236 0.91124 0.89466 0.90426 0.90225 0.92115 0.93728 0.94061 0.92837 0.89546 0.88166 0.88769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.88 9.43 36.00 0.34 -0.54 16 2 C 0.12 1.52 7.02 -81.88 -0.57 0.95 16 3 C -0.10 -1.61 6.76 -83.55 -0.57 -2.18 16 4 C 0.60 10.92 7.62 -12.48 -0.10 10.83 16 5 O -0.55 -10.24 14.34 5.28 0.08 -10.16 16 6 N -0.58 -10.93 2.89 -182.82 -0.53 -11.46 16 7 C 0.09 1.79 7.32 59.84 0.44 2.23 16 8 C 0.12 2.19 5.25 -4.04 -0.02 2.17 16 9 C 0.13 2.71 4.49 -66.87 -0.30 2.41 16 10 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 11 C -0.15 -2.62 7.86 -25.79 -0.20 -2.82 16 12 C 0.10 2.12 7.50 -2.85 -0.02 2.10 16 13 N -0.62 -14.90 3.26 -169.74 -0.55 -15.45 16 14 C -0.23 -6.37 9.86 -15.06 -0.15 -6.52 16 15 H 0.10 2.87 5.35 -52.49 -0.28 2.59 16 16 C 0.02 0.62 5.50 -17.43 -0.10 0.53 16 17 N -0.91 -28.21 13.97 55.49 0.78 -27.44 16 18 Si 0.89 22.85 24.71 -169.99 -4.20 18.65 16 19 H -0.29 -7.39 7.02 56.52 0.40 -6.99 16 20 H -0.30 -7.95 7.11 56.52 0.40 -7.55 16 21 H -0.27 -6.75 6.82 56.52 0.39 -6.36 16 22 N -0.19 -3.36 8.90 32.85 0.29 -3.07 16 23 N -0.08 -1.20 13.78 60.35 0.83 -0.37 16 24 N -0.37 -4.41 4.03 -63.59 -0.26 -4.67 16 25 C 0.09 0.52 11.18 59.85 0.67 1.19 16 26 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.07 0.42 7.82 -51.92 -0.41 0.02 16 28 H 0.11 1.26 6.34 -51.93 -0.33 0.93 16 29 H 0.05 0.94 7.31 -51.93 -0.38 0.56 16 30 H 0.09 1.83 6.71 -51.93 -0.35 1.48 16 31 H 0.07 1.50 6.45 -51.93 -0.34 1.17 16 32 H 0.09 1.62 7.78 -51.93 -0.40 1.21 16 33 H 0.08 1.29 7.54 -51.93 -0.39 0.90 16 34 H 0.08 1.36 8.10 -51.93 -0.42 0.94 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.04 1.02 3.68 -51.93 -0.19 0.83 16 37 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 39 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.10 0.51 8.14 -51.92 -0.42 0.08 16 41 H 0.09 0.32 7.76 -51.93 -0.40 -0.08 16 LS Contribution 328.64 15.07 4.95 4.95 Total: -1.00 -34.80 328.64 -4.77 -39.57 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -5.58 Total: -0.90 kcal Atomic # 6 Polarization: 10.92 SS G_CDS: -0.58 Total: 10.34 kcal Atomic # 7 Polarization: -63.02 SS G_CDS: 0.56 Total: -62.45 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.08 Total: -10.16 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -4.20 Total: 18.65 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -34.80 -4.77 -39.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085530478.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.331 kcal (2) G-P(sol) polarization free energy of solvation -34.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds