Wall clock time and date at job start Tue Mar 31 2020 03:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.36604 * 126.57830 * 2 1 4 4 C 1.47512 * 125.77014 * 0.02562 * 3 2 1 5 5 O 1.21596 * 120.00176 * 356.03650 * 4 3 2 6 6 N 1.34784 * 120.00018 * 176.03907 * 4 3 2 7 7 C 1.46496 * 119.99792 * 4.65009 * 6 4 3 8 8 C 1.46500 * 119.99882 * 184.65096 * 6 4 3 9 9 C 1.52998 * 109.47178 * 84.12912 * 8 6 4 10 10 H 1.09004 * 112.96340 * 310.94270 * 9 8 6 11 11 C 1.53942 * 113.77093 * 179.26221 * 9 8 6 12 12 C 1.53950 * 86.29407 * 222.09183 * 11 9 8 13 13 N 1.47583 * 113.77031 * 82.62135 * 9 8 6 14 14 C 1.36940 * 134.48925 * 318.92704 * 13 9 8 15 15 H 1.07996 * 120.00328 * 338.19060 * 14 13 9 16 16 C 1.38819 * 119.99737 * 158.18880 * 14 13 9 17 17 N 1.31611 * 120.00090 * 164.48723 * 16 14 13 18 18 Si 1.86802 * 119.99874 * 344.48944 * 16 14 13 19 19 H 1.48502 * 109.47245 * 85.14395 * 18 16 14 20 20 H 1.48501 * 109.47109 * 205.14573 * 18 16 14 21 21 H 1.48505 * 109.47094 * 325.14324 * 18 16 14 22 22 N 1.34406 * 108.45654 * 179.86669 * 3 2 1 23 23 N 1.28763 * 109.51984 * 0.40569 * 22 3 2 24 24 N 1.34815 * 126.58314 * 180.31067 * 2 1 3 25 25 C 1.46499 * 126.59008 * 0.02562 * 24 2 1 26 26 H 1.08996 * 109.47479 * 269.71485 * 1 2 3 27 27 H 1.09010 * 109.47116 * 149.71028 * 1 2 3 28 28 H 1.09004 * 109.47504 * 29.71380 * 1 2 3 29 29 H 1.08997 * 109.47173 * 57.82581 * 7 6 4 30 30 H 1.09002 * 109.47028 * 177.83320 * 7 6 4 31 31 H 1.09006 * 109.46778 * 297.82783 * 7 6 4 32 32 H 1.09001 * 109.47021 * 204.12798 * 8 6 4 33 33 H 1.08998 * 109.47492 * 324.12738 * 8 6 4 34 34 H 1.09001 * 113.74390 * 336.43856 * 11 9 8 35 35 H 1.09001 * 113.74506 * 107.63903 * 11 9 8 36 36 H 1.09000 * 113.77173 * 137.90734 * 12 11 9 37 37 H 1.08997 * 113.76817 * 269.19320 * 12 11 9 38 38 H 0.96997 * 120.00159 * 180.02562 * 17 16 14 39 39 H 1.09006 * 109.47307 * 90.00173 * 25 24 2 40 40 H 1.09009 * 109.46700 * 209.99870 * 25 24 2 41 41 H 1.08998 * 109.47255 * 329.99759 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3210 1.0970 0.0000 4 6 1.8737 2.5027 0.0005 5 8 0.6882 2.7635 -0.0718 6 7 2.7790 3.4979 0.0811 7 6 4.2108 3.1886 0.0654 8 6 2.3311 4.8890 0.1844 9 6 2.0269 5.2195 1.6470 10 1 1.3918 4.4755 2.1279 11 6 1.5629 6.6700 1.8717 12 6 2.4746 6.6639 3.1122 13 7 3.2205 5.5819 2.4356 14 6 4.5027 5.1066 2.5093 15 1 4.7257 4.1017 2.1825 16 6 5.5158 5.9165 3.0039 17 7 6.6661 5.3868 3.3622 18 14 5.2464 7.7583 3.1612 19 1 4.5784 8.0522 4.4545 20 1 6.5562 8.4563 3.1107 21 1 4.3904 8.2306 2.0434 22 7 3.5984 0.6789 0.0030 23 7 3.6298 -0.6083 -0.0038 24 7 2.3104 -1.0825 -0.0059 25 6 1.8863 -2.4848 -0.0140 26 1 -0.3634 -0.0051 1.0276 27 1 -0.3634 -0.8874 -0.5184 28 1 -0.3634 0.8926 -0.5094 29 1 4.4550 2.6446 -0.8470 30 1 4.7832 4.1157 0.1000 31 1 4.4596 2.5755 0.9317 32 1 3.1152 5.5513 -0.1823 33 1 1.4304 5.0261 -0.4140 34 1 1.8867 7.3601 1.0926 35 1 0.5020 6.7603 2.1052 36 1 3.0488 7.5815 3.2401 37 1 1.9716 6.3462 4.0255 38 1 7.3739 5.9526 3.7082 39 1 1.7815 -2.8268 -1.0437 40 1 2.6329 -3.0931 0.4967 41 1 0.9291 -2.5779 0.4990 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085530478.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:59 Heat of formation + Delta-G solvation = 113.915023 kcal Electronic energy + Delta-G solvation = -24348.647886 eV Core-core repulsion = 20881.872581 eV Total energy + Delta-G solvation = -3466.775305 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -43.29070 -40.82652 -39.54844 -36.59025 -35.67816 -34.37294 -33.30863 -30.87243 -30.02348 -28.72856 -28.31717 -27.39719 -25.26157 -24.86664 -23.55064 -21.97226 -20.94465 -20.49751 -19.00191 -18.40677 -17.55911 -17.42020 -16.99476 -16.84064 -16.41840 -15.80563 -15.37579 -15.14487 -14.83505 -14.82299 -14.28977 -14.22855 -14.12171 -13.97228 -13.79703 -13.48918 -13.22818 -13.06399 -12.94929 -12.77693 -12.68282 -12.59257 -12.13638 -12.06539 -11.84777 -11.53551 -11.25296 -11.10465 -10.96522 -10.69877 -10.20854 -9.57636 -8.95687 -8.06824 -5.36530 0.12944 0.63763 1.18485 1.33791 1.40643 1.51360 2.01983 2.24819 2.49630 2.95035 3.18562 3.28916 3.41187 3.66119 3.71867 3.81453 4.20547 4.30147 4.34269 4.37305 4.43313 4.55816 4.59533 4.62567 4.65594 4.66390 4.70406 4.75931 4.82717 4.84489 4.93752 5.02327 5.08926 5.17924 5.40368 5.52488 5.57132 5.66712 6.26014 6.38974 6.65703 6.87028 7.13655 7.55758 8.39167 9.13836 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.022559 B = 0.004683 C = 0.004121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.894760 B = 5977.332734 C = 6793.071903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.132 3.868 3 C -0.136 4.136 4 C 0.598 3.402 5 O -0.557 6.557 6 N -0.592 5.592 7 C 0.117 3.883 8 C 0.123 3.877 9 C 0.133 3.867 10 H 0.047 0.953 11 C -0.119 4.119 12 C 0.085 3.915 13 N -0.643 5.643 14 C -0.208 4.208 15 H 0.074 0.926 16 C -0.042 4.042 17 N -0.966 5.966 18 Si 0.949 3.051 19 H -0.287 1.287 20 H -0.315 1.315 21 H -0.254 1.254 22 N -0.223 5.223 23 N -0.103 5.103 24 N -0.354 5.354 25 C 0.073 3.927 26 H 0.102 0.898 27 H 0.115 0.885 28 H 0.098 0.902 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.042 0.958 32 H 0.082 0.918 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.100 0.900 36 H 0.037 0.963 37 H 0.050 0.950 38 H 0.258 0.742 39 H 0.112 0.888 40 H 0.107 0.893 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.890 -12.383 -9.573 23.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.008 4.008 3 C -0.276 4.276 4 C 0.386 3.614 5 O -0.436 6.436 6 N -0.321 5.321 7 C -0.026 4.026 8 C 0.000 4.000 9 C 0.026 3.974 10 H 0.065 0.935 11 C -0.157 4.157 12 C -0.039 4.039 13 N -0.371 5.371 14 C -0.336 4.336 15 H 0.091 0.909 16 C -0.235 4.235 17 N -0.614 5.614 18 Si 0.780 3.220 19 H -0.214 1.214 20 H -0.244 1.244 21 H -0.179 1.179 22 N -0.095 5.095 23 N -0.083 5.083 24 N -0.140 5.140 25 C -0.066 4.066 26 H 0.120 0.880 27 H 0.134 0.866 28 H 0.116 0.884 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.060 0.940 32 H 0.101 0.899 33 H 0.118 0.882 34 H 0.111 0.889 35 H 0.118 0.882 36 H 0.055 0.945 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.130 0.870 40 H 0.126 0.874 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -15.637 -12.754 -9.565 22.331 hybrid contribution 0.150 0.859 0.756 1.153 sum -15.487 -11.896 -8.809 21.423 Atomic orbital electron populations 1.20839 0.81791 1.06606 1.05592 1.22385 0.97560 0.85533 0.95312 1.21377 0.89626 0.95940 1.20643 1.16939 0.85151 0.83075 0.76285 1.90668 1.15852 1.83885 1.53197 1.47641 1.07241 1.06883 1.70360 1.21685 0.79293 1.00810 1.00814 1.21883 1.01177 0.80233 0.96679 1.22777 0.86943 0.96071 0.91569 0.93547 1.23438 0.99783 0.95389 0.97113 1.23065 0.92671 0.91612 0.96512 1.46640 1.06071 1.39897 1.44534 1.18827 0.81856 0.96795 1.36106 0.90898 1.25554 0.95129 1.01629 1.01204 1.69925 1.06633 1.36030 1.48824 0.85809 0.74830 0.82799 0.78587 1.21399 1.24370 1.17867 1.74857 1.20000 1.04454 1.10238 1.81897 0.98177 1.03501 1.24706 1.50648 1.05220 1.09406 1.48727 1.22712 1.04054 0.73137 1.06685 0.87992 0.86626 0.88385 0.91612 0.91244 0.93961 0.89944 0.88157 0.88887 0.88192 0.94539 0.93219 0.93348 0.87012 0.87425 0.85378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.37 9.43 71.23 0.67 -0.70 16 2 C 0.13 3.22 7.02 41.72 0.29 3.51 16 3 C -0.14 -4.57 6.76 40.81 0.28 -4.29 16 4 C 0.60 21.71 7.62 86.69 0.66 22.38 16 5 O -0.56 -19.94 14.34 -4.02 -0.06 -19.99 16 6 N -0.59 -22.49 2.89 -850.57 -2.46 -24.94 16 7 C 0.12 4.74 7.32 127.77 0.94 5.67 16 8 C 0.12 4.38 5.25 86.38 0.45 4.83 16 9 C 0.13 5.11 4.49 45.09 0.20 5.32 16 10 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 11 C -0.12 -3.80 7.86 31.25 0.25 -3.56 16 12 C 0.09 3.50 7.50 86.44 0.65 4.15 16 13 N -0.64 -30.66 3.26 -690.94 -2.25 -32.91 16 14 C -0.21 -11.80 9.86 84.03 0.83 -10.98 16 15 H 0.07 4.46 5.35 -2.91 -0.02 4.44 16 16 C -0.04 -2.50 5.50 84.87 0.47 -2.03 16 17 N -0.97 -62.09 13.97 21.65 0.30 -61.78 16 18 Si 0.95 47.75 24.71 68.60 1.70 49.44 16 19 H -0.29 -14.10 7.02 99.48 0.70 -13.40 16 20 H -0.31 -16.19 7.11 99.48 0.71 -15.49 16 21 H -0.25 -11.79 6.82 99.48 0.68 -11.11 16 22 N -0.22 -8.15 8.90 -50.00 -0.45 -8.60 16 23 N -0.10 -3.29 13.78 37.02 0.51 -2.78 16 24 N -0.35 -7.77 4.03 -355.09 -1.43 -9.20 16 25 C 0.07 0.59 11.18 127.77 1.43 2.02 16 26 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.12 0.75 7.82 -2.38 -0.02 0.74 16 28 H 0.10 1.91 6.34 -2.38 -0.02 1.90 16 29 H 0.07 2.44 7.31 -2.39 -0.02 2.42 16 30 H 0.07 3.02 6.71 -2.39 -0.02 3.01 16 31 H 0.04 1.93 6.45 -2.38 -0.02 1.92 16 32 H 0.08 3.00 7.78 -2.39 -0.02 2.98 16 33 H 0.10 3.11 7.54 -2.39 -0.02 3.09 16 34 H 0.09 2.78 8.10 -2.39 -0.02 2.76 16 35 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 36 H 0.04 1.57 3.68 -2.39 -0.01 1.56 16 37 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 39 H 0.11 0.44 8.14 -2.38 -0.02 0.42 16 40 H 0.11 0.79 8.14 -2.38 -0.02 0.77 16 41 H 0.13 0.24 7.76 -2.39 -0.02 0.22 16 Total: -1.00 -79.42 328.64 3.99 -75.43 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: 1.01 Total: 9.02 kcal Atomic # 6 Polarization: 19.21 SS G_CDS: 7.11 Total: 26.32 kcal Atomic # 7 Polarization: -134.44 SS G_CDS: -5.77 Total: -140.22 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -0.06 Total: -19.99 kcal Atomic # 14 Polarization: 47.75 SS G_CDS: 1.70 Total: 49.44 kcal Total: -79.42 3.99 -75.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085530478.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.342 kcal (2) G-P(sol) polarization free energy of solvation -79.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds