Wall clock time and date at job start Tue Mar 31 2020 03:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36587 * 126.58487 * 2 1 4 4 C 1.47525 * 125.76837 * 359.97438 * 3 2 1 5 5 O 1.21594 * 119.99943 * 0.04764 * 4 3 2 6 6 N 1.34780 * 120.00185 * 180.02562 * 4 3 2 7 7 C 1.46497 * 120.00413 * 179.97438 * 6 4 3 8 8 C 1.52997 * 109.47360 * 180.02562 * 7 6 4 9 9 H 1.09002 * 112.84929 * 314.66844 * 8 7 6 10 10 C 1.53780 * 113.61745 * 85.86348 * 8 7 6 11 11 C 1.53954 * 87.01953 * 139.95171 * 10 8 7 12 12 H 1.08995 * 113.66485 * 220.06752 * 11 10 8 13 13 N 1.46497 * 113.61280 * 89.19899 * 11 10 8 14 14 C 1.36943 * 119.99888 * 107.46587 * 13 11 10 15 15 H 1.08005 * 119.99870 * 359.97438 * 14 13 11 16 16 C 1.38811 * 119.99930 * 180.02562 * 14 13 11 17 17 N 1.31610 * 120.00272 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99757 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47431 * 59.99716 * 18 16 14 20 20 H 1.48498 * 109.47306 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47230 * 299.99487 * 18 16 14 22 22 C 1.53779 * 113.61413 * 183.47338 * 8 7 6 23 23 N 1.34402 * 108.46316 * 179.97438 * 3 2 1 24 24 N 1.28764 * 109.51916 * 0.02562 * 23 3 2 25 25 N 1.34814 * 126.57531 * 179.97438 * 2 1 3 26 26 C 1.46499 * 126.59789 * 359.97438 * 25 2 1 27 27 H 1.09002 * 109.47429 * 269.97572 * 1 2 3 28 28 H 1.09000 * 109.47318 * 29.97469 * 1 2 3 29 29 H 1.08998 * 109.47391 * 149.97334 * 1 2 3 30 30 H 0.97007 * 119.99908 * 0.02562 * 6 4 3 31 31 H 1.09001 * 109.46794 * 300.00407 * 7 6 4 32 32 H 1.08999 * 109.46967 * 59.99604 * 7 6 4 33 33 H 1.08998 * 113.61474 * 254.53299 * 10 8 7 34 34 H 1.09001 * 113.60975 * 25.43102 * 10 8 7 35 35 H 0.96992 * 120.00369 * 287.47003 * 13 11 10 36 36 H 0.97002 * 120.00731 * 180.02562 * 17 16 14 37 37 H 1.09003 * 113.61671 * 334.56079 * 22 8 7 38 38 H 1.09004 * 113.61926 * 105.38322 * 22 8 7 39 39 H 1.09003 * 109.47074 * 270.00034 * 26 25 2 40 40 H 1.08998 * 109.47455 * 29.99743 * 26 25 2 41 41 H 1.09002 * 109.47512 * 150.00533 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0968 0.0000 4 6 1.8738 2.5026 -0.0005 5 8 0.6860 2.7627 -0.0002 6 7 2.7818 3.4987 -0.0010 7 6 2.3378 4.8947 -0.0021 8 6 3.5577 5.8180 -0.0031 9 1 4.3215 5.5109 0.7114 10 6 4.1101 6.1075 -1.4087 11 6 4.3253 7.5574 -0.9379 12 1 4.0759 8.3039 -1.6920 13 7 5.6349 7.7862 -0.3223 14 6 6.5918 8.4997 -0.9936 15 1 6.3811 8.8934 -1.9771 16 6 7.8328 8.7160 -0.4105 17 7 8.0896 8.2359 0.7876 18 14 9.1378 9.6899 -1.3260 19 1 8.6298 11.0569 -1.6061 20 1 10.3640 9.7790 -0.4932 21 1 9.4568 9.0084 -2.6062 22 6 3.2002 7.3113 0.0811 23 7 3.5984 0.6787 0.0006 24 7 3.6298 -0.6085 0.0004 25 7 2.3103 -1.0827 0.0005 26 6 1.8862 -2.4849 0.0016 27 1 -0.3634 -0.0004 1.0277 28 1 -0.3634 0.8902 -0.5134 29 1 -0.3634 -0.8897 -0.5142 30 1 3.7294 3.2911 -0.0014 31 1 1.7381 5.0845 -0.8924 32 1 1.7377 5.0858 0.8876 33 1 5.0363 5.5778 -1.6316 34 1 3.3654 6.0110 -2.1988 35 1 5.8242 7.4323 0.5607 36 1 8.9567 8.3873 1.1953 37 1 2.2064 7.5446 -0.3010 38 1 3.3915 7.7517 1.0597 39 1 1.7814 -2.8320 1.0296 40 1 0.9290 -2.5755 -0.5117 41 1 2.6327 -3.0908 -0.5119 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086331170.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:37:45 Heat of formation + Delta-G solvation = 87.086174 kcal Electronic energy + Delta-G solvation = -22659.601622 eV Core-core repulsion = 19191.662931 eV Total energy + Delta-G solvation = -3467.938692 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.48632 -39.52322 -38.35500 -35.31117 -34.54973 -33.13627 -32.58626 -30.21795 -28.81767 -27.81483 -26.96098 -25.00020 -23.93986 -23.26282 -21.76648 -21.17720 -20.50048 -18.57260 -17.90619 -17.21969 -16.72598 -16.23707 -15.86436 -15.24837 -14.84066 -14.51136 -14.36814 -14.13471 -13.86627 -13.75331 -13.46181 -13.39356 -13.10117 -12.89667 -12.81235 -12.22000 -12.16023 -11.86269 -11.40367 -11.34816 -10.99883 -10.79677 -10.51116 -10.44486 -10.22928 -10.15774 -9.79814 -9.64546 -9.44782 -9.39156 -8.90698 -8.82840 -6.95788 -5.76458 -3.05459 0.86301 1.55964 1.73491 3.18227 3.23175 3.45713 3.49979 3.51042 3.93910 4.03088 4.28371 4.48324 4.53122 4.59507 4.76559 4.95684 5.09501 5.12482 5.13901 5.28935 5.34517 5.46448 5.49700 5.66302 5.68843 5.75653 5.92107 6.00766 6.09525 6.16332 6.26287 6.42496 6.46713 6.64347 6.81699 6.95216 7.10373 7.47554 7.72289 7.78675 8.18381 8.42746 9.53208 10.11283 10.45403 11.45953 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.024946 B = 0.002722 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.155937 B =10282.374112 C =11112.755395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.121 3.879 3 C -0.105 4.105 4 C 0.603 3.397 5 O -0.545 6.545 6 N -0.707 5.707 7 C 0.132 3.868 8 C -0.121 4.121 9 H 0.094 0.906 10 C -0.169 4.169 11 C 0.168 3.832 12 H 0.062 0.938 13 N -0.706 5.706 14 C -0.242 4.242 15 H 0.071 0.929 16 C -0.013 4.013 17 N -0.933 5.933 18 Si 0.909 3.091 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.286 1.286 22 C -0.147 4.147 23 N -0.199 5.199 24 N -0.067 5.067 25 N -0.367 5.367 26 C 0.087 3.913 27 H 0.091 0.909 28 H 0.113 0.887 29 H 0.074 0.926 30 H 0.411 0.589 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.385 0.615 36 H 0.256 0.744 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.089 0.911 40 H 0.096 0.904 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.852 -20.820 -1.029 27.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.017 4.017 3 C -0.244 4.244 4 C 0.387 3.613 5 O -0.422 6.422 6 N -0.356 5.356 7 C 0.009 3.991 8 C -0.139 4.139 9 H 0.112 0.888 10 C -0.210 4.210 11 C 0.055 3.945 12 H 0.080 0.920 13 N -0.344 5.344 14 C -0.374 4.374 15 H 0.089 0.911 16 C -0.209 4.209 17 N -0.581 5.581 18 Si 0.739 3.261 19 H -0.212 1.212 20 H -0.217 1.217 21 H -0.212 1.212 22 C -0.187 4.187 23 N -0.072 5.072 24 N -0.047 5.047 25 N -0.153 5.153 26 C -0.054 4.054 27 H 0.110 0.890 28 H 0.131 0.869 29 H 0.092 0.908 30 H 0.246 0.754 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.219 0.781 36 H 0.066 0.934 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.108 0.892 40 H 0.114 0.886 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -17.058 -20.917 -1.126 27.014 hybrid contribution 0.394 0.123 -0.113 0.428 sum -16.664 -20.794 -1.239 26.676 Atomic orbital electron populations 1.20717 0.84632 1.05350 1.04643 1.21917 0.96231 0.86357 0.97191 1.21275 0.89004 0.95583 1.18570 1.16709 0.85599 0.82490 0.76504 1.90743 1.15926 1.83695 1.51871 1.45872 1.10411 1.06170 1.73194 1.21536 0.97122 0.78565 1.01872 1.22722 0.96412 0.94822 0.99975 0.88774 1.23920 1.00354 1.02275 0.94458 1.21085 0.86203 0.93397 0.93787 0.91990 1.42165 1.09043 1.63599 1.19610 1.19245 0.92523 1.26006 0.99584 0.91060 1.24760 0.97951 1.01335 0.96833 1.69646 1.23082 1.50146 1.15183 0.86246 0.81240 0.79869 0.78698 1.21229 1.21703 1.21225 1.23436 0.99664 0.94086 1.01465 1.74644 1.19026 1.04111 1.09413 1.82032 0.95819 1.03472 1.23382 1.50300 1.06553 1.07758 1.50695 1.22160 1.02412 0.76105 1.04706 0.89008 0.86901 0.90756 0.75372 0.91332 0.91560 0.91422 0.91418 0.78082 0.93390 0.90458 0.91314 0.89245 0.88561 0.88034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.63 9.57 36.00 0.34 -0.29 16 2 C 0.12 1.22 7.02 -81.88 -0.57 0.65 16 3 C -0.10 -1.39 6.99 -83.55 -0.58 -1.97 16 4 C 0.60 8.60 7.82 -12.47 -0.10 8.51 16 5 O -0.54 -8.40 14.72 5.28 0.08 -8.32 16 6 N -0.71 -9.86 5.55 -61.35 -0.34 -10.20 16 7 C 0.13 1.83 5.50 -4.05 -0.02 1.80 16 8 C -0.12 -1.87 3.63 -89.81 -0.33 -2.20 16 9 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 10 C -0.17 -2.91 7.44 -25.83 -0.19 -3.10 16 11 C 0.17 3.32 4.57 -67.03 -0.31 3.01 16 12 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 13 N -0.71 -17.68 5.31 -52.55 -0.28 -17.95 16 14 C -0.24 -6.76 9.97 -15.06 -0.15 -6.91 16 15 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 16 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 17 N -0.93 -28.26 13.06 55.49 0.72 -27.53 16 18 Si 0.91 22.50 29.55 -169.99 -5.02 17.48 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 C -0.15 -2.38 7.39 -25.92 -0.19 -2.57 16 23 N -0.20 -2.86 12.04 32.85 0.40 -2.46 16 24 N -0.07 -0.87 13.78 60.35 0.83 -0.04 16 25 N -0.37 -3.38 4.03 -63.59 -0.26 -3.63 16 26 C 0.09 0.31 11.33 59.85 0.68 0.99 16 27 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.11 0.96 6.43 -51.93 -0.33 0.63 16 29 H 0.07 0.26 7.18 -51.93 -0.37 -0.11 16 30 H 0.41 5.70 8.16 -40.82 -0.33 5.37 16 31 H 0.07 0.94 7.87 -51.93 -0.41 0.54 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.07 1.04 7.92 -51.93 -0.41 0.63 16 35 H 0.39 10.21 7.90 -40.82 -0.32 9.89 16 36 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 37 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 38 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 39 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16 40 H 0.10 0.10 7.16 -51.93 -0.37 -0.28 16 41 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 LS Contribution 348.04 15.07 5.24 5.24 Total: -1.00 -34.07 348.04 -6.04 -40.11 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -5.90 Total: 9.85 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: -1.52 Total: -2.54 kcal Atomic # 7 Polarization: -62.90 SS G_CDS: 1.08 Total: -61.82 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: 0.08 Total: -8.32 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.07 -6.04 -40.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086331170.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.196 kcal (2) G-P(sol) polarization free energy of solvation -34.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds