Wall clock time and date at job start Tue Mar 31 2020 03:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36587 * 126.58487 * 2 1 4 4 C 1.47525 * 125.76837 * 359.97438 * 3 2 1 5 5 O 1.21594 * 119.99943 * 0.04764 * 4 3 2 6 6 N 1.34780 * 120.00185 * 180.02562 * 4 3 2 7 7 C 1.46497 * 120.00413 * 179.97438 * 6 4 3 8 8 C 1.52997 * 109.47360 * 180.02562 * 7 6 4 9 9 H 1.09002 * 112.84929 * 314.66844 * 8 7 6 10 10 C 1.53780 * 113.61745 * 85.86348 * 8 7 6 11 11 C 1.53954 * 87.01953 * 139.95171 * 10 8 7 12 12 H 1.08995 * 113.66485 * 220.06752 * 11 10 8 13 13 N 1.46497 * 113.61280 * 89.19899 * 11 10 8 14 14 C 1.36943 * 119.99888 * 107.46587 * 13 11 10 15 15 H 1.08005 * 119.99870 * 359.97438 * 14 13 11 16 16 C 1.38811 * 119.99930 * 180.02562 * 14 13 11 17 17 N 1.31610 * 120.00272 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99757 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47431 * 59.99716 * 18 16 14 20 20 H 1.48498 * 109.47306 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47230 * 299.99487 * 18 16 14 22 22 C 1.53779 * 113.61413 * 183.47338 * 8 7 6 23 23 N 1.34402 * 108.46316 * 179.97438 * 3 2 1 24 24 N 1.28764 * 109.51916 * 0.02562 * 23 3 2 25 25 N 1.34814 * 126.57531 * 179.97438 * 2 1 3 26 26 C 1.46499 * 126.59789 * 359.97438 * 25 2 1 27 27 H 1.09002 * 109.47429 * 269.97572 * 1 2 3 28 28 H 1.09000 * 109.47318 * 29.97469 * 1 2 3 29 29 H 1.08998 * 109.47391 * 149.97334 * 1 2 3 30 30 H 0.97007 * 119.99908 * 0.02562 * 6 4 3 31 31 H 1.09001 * 109.46794 * 300.00407 * 7 6 4 32 32 H 1.08999 * 109.46967 * 59.99604 * 7 6 4 33 33 H 1.08998 * 113.61474 * 254.53299 * 10 8 7 34 34 H 1.09001 * 113.60975 * 25.43102 * 10 8 7 35 35 H 0.96992 * 120.00369 * 287.47003 * 13 11 10 36 36 H 0.97002 * 120.00731 * 180.02562 * 17 16 14 37 37 H 1.09003 * 113.61671 * 334.56079 * 22 8 7 38 38 H 1.09004 * 113.61926 * 105.38322 * 22 8 7 39 39 H 1.09003 * 109.47074 * 270.00034 * 26 25 2 40 40 H 1.08998 * 109.47455 * 29.99743 * 26 25 2 41 41 H 1.09002 * 109.47512 * 150.00533 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0968 0.0000 4 6 1.8738 2.5026 -0.0005 5 8 0.6860 2.7627 -0.0002 6 7 2.7818 3.4987 -0.0010 7 6 2.3378 4.8947 -0.0021 8 6 3.5577 5.8180 -0.0031 9 1 4.3215 5.5109 0.7114 10 6 4.1101 6.1075 -1.4087 11 6 4.3253 7.5574 -0.9379 12 1 4.0759 8.3039 -1.6920 13 7 5.6349 7.7862 -0.3223 14 6 6.5918 8.4997 -0.9936 15 1 6.3811 8.8934 -1.9771 16 6 7.8328 8.7160 -0.4105 17 7 8.0896 8.2359 0.7876 18 14 9.1378 9.6899 -1.3260 19 1 8.6298 11.0569 -1.6061 20 1 10.3640 9.7790 -0.4932 21 1 9.4568 9.0084 -2.6062 22 6 3.2002 7.3113 0.0811 23 7 3.5984 0.6787 0.0006 24 7 3.6298 -0.6085 0.0004 25 7 2.3103 -1.0827 0.0005 26 6 1.8862 -2.4849 0.0016 27 1 -0.3634 -0.0004 1.0277 28 1 -0.3634 0.8902 -0.5134 29 1 -0.3634 -0.8897 -0.5142 30 1 3.7294 3.2911 -0.0014 31 1 1.7381 5.0845 -0.8924 32 1 1.7377 5.0858 0.8876 33 1 5.0363 5.5778 -1.6316 34 1 3.3654 6.0110 -2.1988 35 1 5.8242 7.4323 0.5607 36 1 8.9567 8.3873 1.1953 37 1 2.2064 7.5446 -0.3010 38 1 3.3915 7.7517 1.0597 39 1 1.7814 -2.8320 1.0296 40 1 0.9290 -2.5755 -0.5117 41 1 2.6327 -3.0908 -0.5119 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086331170.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:37:43 Heat of formation + Delta-G solvation = 61.368580 kcal Electronic energy + Delta-G solvation = -22660.716821 eV Core-core repulsion = 19191.662931 eV Total energy + Delta-G solvation = -3469.053890 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -43.31936 -40.70804 -39.71505 -36.18595 -35.79541 -34.88959 -33.32873 -32.08148 -29.77494 -28.34299 -28.13164 -26.41485 -25.74359 -24.47183 -23.04449 -21.99329 -21.49540 -19.92730 -19.35591 -18.86145 -17.48642 -17.22309 -16.81820 -16.67784 -16.28979 -15.73948 -15.70284 -15.26050 -15.00557 -14.73367 -14.58712 -14.21578 -14.12211 -13.96827 -13.68211 -13.27498 -13.23305 -12.97937 -12.91189 -12.90321 -12.60451 -12.20886 -12.19669 -12.05700 -11.56905 -11.46787 -11.19683 -11.11423 -10.90573 -10.76560 -10.33856 -9.96079 -8.99001 -7.94340 -5.22783 0.09705 0.56875 1.13012 1.47670 1.50819 1.56787 2.14945 2.20206 2.56583 3.16737 3.37805 3.43769 3.61078 3.71956 3.75759 3.81503 3.92203 4.16118 4.30054 4.34783 4.39005 4.43885 4.59004 4.66556 4.66834 4.75125 4.78754 4.87173 4.95193 5.01019 5.06393 5.14449 5.28403 5.37298 5.46866 5.52168 5.56650 5.68512 6.29167 6.39958 6.86302 7.10816 7.33801 8.11890 8.33682 9.28937 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.024946 B = 0.002722 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.155937 B =10282.374112 C =11112.755395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.133 3.867 3 C -0.136 4.136 4 C 0.603 3.397 5 O -0.559 6.559 6 N -0.710 5.710 7 C 0.142 3.858 8 C -0.106 4.106 9 H 0.075 0.925 10 C -0.156 4.156 11 C 0.144 3.856 12 H 0.062 0.938 13 N -0.721 5.721 14 C -0.243 4.243 15 H 0.077 0.923 16 C -0.077 4.077 17 N -0.970 5.970 18 Si 0.974 3.026 19 H -0.276 1.276 20 H -0.296 1.296 21 H -0.279 1.279 22 C -0.129 4.129 23 N -0.230 5.230 24 N -0.097 5.097 25 N -0.354 5.354 26 C 0.072 3.928 27 H 0.106 0.894 28 H 0.095 0.905 29 H 0.113 0.887 30 H 0.409 0.591 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.041 0.959 34 H 0.094 0.906 35 H 0.373 0.627 36 H 0.251 0.749 37 H 0.111 0.889 38 H 0.058 0.942 39 H 0.109 0.891 40 H 0.130 0.870 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.192 -22.207 -1.928 30.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.007 4.007 3 C -0.276 4.276 4 C 0.388 3.612 5 O -0.438 6.438 6 N -0.359 5.359 7 C 0.019 3.981 8 C -0.125 4.125 9 H 0.093 0.907 10 C -0.196 4.196 11 C 0.034 3.966 12 H 0.081 0.919 13 N -0.359 5.359 14 C -0.375 4.375 15 H 0.095 0.905 16 C -0.269 4.269 17 N -0.621 5.621 18 Si 0.803 3.197 19 H -0.202 1.202 20 H -0.223 1.223 21 H -0.205 1.205 22 C -0.169 4.169 23 N -0.102 5.102 24 N -0.077 5.077 25 N -0.139 5.139 26 C -0.067 4.067 27 H 0.124 0.876 28 H 0.114 0.886 29 H 0.132 0.868 30 H 0.244 0.756 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.060 0.940 34 H 0.112 0.888 35 H 0.205 0.795 36 H 0.060 0.940 37 H 0.129 0.871 38 H 0.077 0.923 39 H 0.127 0.873 40 H 0.148 0.852 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -19.435 -22.338 -2.062 29.681 hybrid contribution 0.986 0.433 0.134 1.085 sum -18.449 -21.905 -1.927 28.703 Atomic orbital electron populations 1.20847 0.81916 1.06414 1.05769 1.22400 0.97562 0.85636 0.95089 1.21365 0.89505 0.95896 1.20873 1.16854 0.85351 0.82988 0.75974 1.90724 1.16267 1.84080 1.52709 1.45896 1.10409 1.06306 1.73323 1.21410 0.95972 0.78173 1.02547 1.22507 0.96604 0.95137 0.98273 0.90673 1.23764 1.00044 0.99620 0.96201 1.21430 0.85234 0.94781 0.95163 0.91936 1.42320 1.10665 1.63628 1.19276 1.19655 0.93142 1.25005 0.99691 0.90483 1.25578 1.00254 1.03229 0.97864 1.69808 1.23241 1.52184 1.16861 0.85203 0.78301 0.78784 0.77434 1.20218 1.22279 1.20504 1.23324 0.99719 0.93932 0.99893 1.74602 1.20108 1.04988 1.10535 1.81912 0.98104 1.03078 1.24595 1.50649 1.05197 1.09488 1.48596 1.22734 1.04201 0.73095 1.06661 0.87618 0.88628 0.86823 0.75566 0.90458 0.90964 0.93958 0.88769 0.79451 0.94036 0.87081 0.92306 0.87294 0.85162 0.87242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.94 9.57 71.23 0.68 -0.26 16 2 C 0.13 2.45 7.02 41.71 0.29 2.75 16 3 C -0.14 -3.56 6.99 40.81 0.29 -3.28 16 4 C 0.60 16.98 7.82 86.69 0.68 17.66 16 5 O -0.56 -16.67 14.72 -4.01 -0.06 -16.73 16 6 N -0.71 -19.68 5.55 -466.28 -2.59 -22.27 16 7 C 0.14 3.74 5.50 86.38 0.47 4.21 16 8 C -0.11 -3.24 3.63 -10.27 -0.04 -3.28 16 9 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 10 C -0.16 -5.26 7.44 31.18 0.23 -5.03 16 11 C 0.14 5.64 4.57 45.58 0.21 5.85 16 12 H 0.06 2.42 8.10 -2.39 -0.02 2.41 16 13 N -0.72 -36.80 5.31 -320.17 -1.70 -38.50 16 14 C -0.24 -13.69 9.97 84.03 0.84 -12.86 16 15 H 0.08 4.15 7.83 -2.91 -0.02 4.12 16 16 C -0.08 -4.50 5.50 84.86 0.47 -4.03 16 17 N -0.97 -60.38 13.06 21.65 0.28 -60.10 16 18 Si 0.97 46.84 29.55 68.60 2.03 48.86 16 19 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 20 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 21 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 22 C -0.13 -4.02 7.39 31.12 0.23 -3.79 16 23 N -0.23 -6.73 12.04 -50.00 -0.60 -7.33 16 24 N -0.10 -2.51 13.78 37.02 0.51 -2.00 16 25 N -0.35 -5.84 4.03 -355.11 -1.43 -7.28 16 26 C 0.07 0.27 11.33 127.77 1.45 1.72 16 27 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.10 1.43 6.43 -2.39 -0.02 1.41 16 29 H 0.11 0.27 7.18 -2.39 -0.02 0.25 16 30 H 0.41 11.67 8.16 -92.70 -0.76 10.91 16 31 H 0.08 1.94 7.87 -2.39 -0.02 1.92 16 32 H 0.07 1.85 8.14 -2.39 -0.02 1.84 16 33 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.09 2.70 7.92 -2.39 -0.02 2.68 16 35 H 0.37 20.49 7.90 -92.71 -0.73 19.75 16 36 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 37 H 0.11 2.74 8.10 -2.39 -0.02 2.72 16 38 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 39 H 0.11 0.07 8.14 -2.39 -0.02 0.05 16 40 H 0.13 -0.36 7.16 -2.39 -0.02 -0.38 16 41 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 Total: -1.00 -76.05 348.04 1.81 -74.24 By element: Atomic # 1 Polarization: 31.86 SS G_CDS: -0.42 Total: 31.44 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: 5.80 Total: -0.35 kcal Atomic # 7 Polarization: -131.94 SS G_CDS: -5.53 Total: -137.47 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: -0.06 Total: -16.73 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.03 Total: 48.86 kcal Total: -76.05 1.81 -74.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086331170.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.611 kcal (2) G-P(sol) polarization free energy of solvation -76.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds