Wall clock time and date at job start Tue Mar 31 2020 03:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.33319 * 126.81261 * 2 1 4 4 N 1.28519 * 109.43610 * 179.97438 * 3 2 1 5 5 N 1.28708 * 110.64061 * 359.71734 * 4 3 2 6 6 H 0.96995 * 126.03998 * 180.29322 * 5 4 3 7 7 C 1.37005 * 126.81206 * 179.97438 * 2 1 3 8 8 C 1.47230 * 127.19160 * 0.02562 * 7 2 1 9 9 O 1.21622 * 119.99993 * 0.02562 * 8 7 2 10 10 N 1.34774 * 120.00034 * 179.97438 * 8 7 2 11 11 C 1.46507 * 120.00199 * 180.02562 * 10 8 7 12 12 C 1.52993 * 109.47290 * 180.02562 * 11 10 8 13 13 H 1.09008 * 110.01785 * 306.39124 * 12 11 10 14 14 C 1.53872 * 110.07347 * 67.81104 * 12 11 10 15 15 C 1.54263 * 106.59900 * 119.30682 * 14 12 11 16 16 C 1.54885 * 104.19972 * 23.61133 * 15 14 12 17 17 H 1.08999 * 110.91633 * 80.44377 * 16 15 14 18 18 N 1.46494 * 110.76220 * 203.74728 * 16 15 14 19 19 C 1.36945 * 119.99612 * 268.32842 * 18 16 15 20 20 H 1.07999 * 120.00077 * 359.97438 * 19 18 16 21 21 C 1.38812 * 119.99637 * 179.97438 * 19 18 16 22 22 N 1.31617 * 120.00227 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99854 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47057 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.47102 * 119.99824 * 23 21 19 26 26 H 1.48500 * 109.47389 * 240.00173 * 23 21 19 27 27 C 1.54264 * 110.03265 * 185.00128 * 12 11 10 28 28 H 1.09004 * 109.46941 * 270.02252 * 1 2 3 29 29 H 1.08999 * 109.47447 * 30.02273 * 1 2 3 30 30 H 1.09006 * 109.47296 * 150.02462 * 1 2 3 31 31 H 0.97000 * 120.00259 * 0.02562 * 10 8 7 32 32 H 1.09001 * 109.46423 * 60.00014 * 11 10 8 33 33 H 1.08996 * 109.46842 * 300.00359 * 11 10 8 34 34 H 1.09009 * 110.03214 * 238.59199 * 14 12 11 35 35 H 1.08998 * 110.03094 * 359.97162 * 14 12 11 36 36 H 1.08993 * 110.48815 * 264.92919 * 15 14 12 37 37 H 1.09004 * 110.48620 * 142.28820 * 15 14 12 38 38 H 0.96995 * 120.00290 * 88.59733 * 18 16 15 39 39 H 0.97005 * 120.00046 * 179.97438 * 22 21 19 40 40 H 1.09005 * 110.48840 * 98.37867 * 27 12 11 41 41 H 1.08997 * 110.48668 * 335.73539 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3058 1.0674 0.0000 4 7 3.5324 0.6835 0.0005 5 7 3.6056 -0.6014 0.0069 6 1 4.4212 -1.1265 0.0126 7 6 2.3279 -1.0969 0.0005 8 6 1.9222 -2.5122 0.0006 9 8 0.7421 -2.8065 -0.0002 10 7 2.8584 -3.4816 0.0006 11 6 2.4547 -4.8899 0.0001 12 6 3.7008 -5.7777 0.0009 13 1 4.3578 -5.4992 -0.8231 14 6 4.4467 -5.6398 1.3396 15 6 4.4667 -7.0432 1.9796 16 6 4.3010 -8.0098 0.7808 17 1 5.2500 -8.1563 0.2650 18 7 3.7482 -9.2931 1.2209 19 6 4.5881 -10.3155 1.5739 20 1 5.6580 -10.1759 1.5273 21 6 4.0642 -11.5312 1.9914 22 7 2.7603 -11.7015 2.0476 23 14 5.2099 -12.9261 2.4722 24 1 6.6193 -12.4832 2.3219 25 1 4.9594 -13.3076 3.8854 26 1 4.9617 -14.0962 1.5922 27 6 3.2935 -7.2602 -0.1260 28 1 -0.3633 0.0004 1.0277 29 1 -0.3634 0.8898 -0.5142 30 1 -0.3634 -0.8902 -0.5135 31 1 3.7996 -3.2469 0.0009 32 1 1.8609 -5.0973 -0.8901 33 1 1.8604 -5.0978 0.8899 34 1 5.4658 -5.2943 1.1654 35 1 3.9214 -4.9397 1.9893 36 1 3.6375 -7.1559 2.6779 37 1 5.4173 -7.2194 2.4831 38 1 2.7873 -9.4198 1.2586 39 1 2.3942 -12.5512 2.3391 40 1 3.3879 -7.5947 -1.1591 41 1 2.2747 -7.4079 0.2323 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086772754.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:52 Heat of formation + Delta-G solvation = 51.588147 kcal Electronic energy + Delta-G solvation = -22750.202559 eV Core-core repulsion = 19280.724558 eV Total energy + Delta-G solvation = -3469.478002 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = -0.01 seconds Orbital eigenvalues (eV) -43.78425 -40.00482 -38.26267 -35.39576 -34.33660 -33.48333 -32.74774 -30.85416 -29.31519 -28.26611 -27.29349 -25.11692 -24.09273 -23.15962 -22.32792 -21.11376 -20.05361 -19.60036 -19.08792 -17.23192 -17.01277 -16.92074 -16.33915 -15.81827 -15.09141 -14.94099 -14.47592 -14.16073 -13.90188 -13.48524 -13.37859 -13.04768 -13.00595 -12.89147 -12.33452 -12.26824 -11.94185 -11.56696 -11.27831 -11.00918 -10.96368 -10.85911 -10.76016 -10.66788 -10.47151 -10.39043 -10.18915 -9.92372 -9.76597 -9.72442 -9.41451 -8.94143 -7.00518 -5.81891 -3.10867 0.45955 1.86326 1.98380 2.59216 2.67647 3.39295 3.44887 3.47246 3.84360 4.15764 4.41003 4.52652 4.60706 4.67343 4.77130 4.90655 5.30143 5.37418 5.37562 5.41649 5.52276 5.55773 5.59463 5.74428 5.80303 5.83581 5.90810 5.94353 6.02193 6.12409 6.17868 6.21642 6.34671 6.46746 6.59181 6.77714 6.93488 7.01526 7.62093 7.65724 7.84531 8.36861 9.47945 10.06003 10.39796 11.40696 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.042191 B = 0.002467 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.482364 B =11346.883258 C =11750.385398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.062 3.938 3 N -0.270 5.270 4 N -0.044 5.044 5 N -0.375 5.375 6 H 0.451 0.549 7 C -0.072 4.072 8 C 0.593 3.407 9 O -0.509 6.509 10 N -0.721 5.721 11 C 0.126 3.874 12 C -0.102 4.102 13 H 0.074 0.926 14 C -0.122 4.122 15 C -0.144 4.144 16 C 0.177 3.823 17 H 0.056 0.944 18 N -0.720 5.720 19 C -0.241 4.241 20 H 0.071 0.929 21 C -0.014 4.014 22 N -0.932 5.932 23 Si 0.906 3.094 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 C -0.123 4.123 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.395 0.605 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.064 0.936 37 H 0.056 0.944 38 H 0.384 0.616 39 H 0.255 0.745 40 H 0.065 0.935 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.827 21.853 -5.530 22.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.078 4.078 3 N -0.137 5.137 4 N -0.026 5.026 5 N -0.103 5.103 6 H 0.297 0.703 7 C -0.205 4.205 8 C 0.376 3.624 9 O -0.382 6.382 10 N -0.372 5.372 11 C 0.004 3.996 12 C -0.121 4.121 13 H 0.092 0.908 14 C -0.160 4.160 15 C -0.185 4.185 16 C 0.066 3.934 17 H 0.074 0.926 18 N -0.360 5.360 19 C -0.372 4.372 20 H 0.089 0.911 21 C -0.210 4.210 22 N -0.580 5.580 23 Si 0.737 3.263 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.218 1.218 27 C -0.162 4.162 28 H 0.102 0.898 29 H 0.098 0.902 30 H 0.114 0.886 31 H 0.228 0.772 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.218 0.782 39 H 0.065 0.935 40 H 0.084 0.916 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.759 22.825 -5.497 23.489 hybrid contribution 0.964 -2.026 0.406 2.280 sum 1.723 20.799 -5.092 21.482 Atomic orbital electron populations 1.20349 0.84675 1.04549 1.03994 1.22380 0.98731 0.86901 0.99774 1.74976 0.95153 1.25973 1.17552 1.78205 1.16076 0.92193 1.16092 1.45473 1.08820 1.07045 1.48933 0.70260 1.22152 0.84991 0.96624 1.16778 1.16713 0.86129 0.82093 0.77471 1.90865 1.16406 1.81800 1.49153 1.45976 1.08912 1.07294 1.74995 1.21717 0.97504 0.77250 1.03152 1.21986 0.95388 0.96162 0.98590 0.90753 1.22231 0.99160 0.99034 0.95580 1.23080 1.01565 0.93568 1.00292 1.21151 0.94862 0.85874 0.91463 0.92628 1.42393 1.06358 1.08530 1.78719 1.19293 0.89881 0.91322 1.36693 0.91147 1.24758 0.95792 0.98044 1.02375 1.69668 1.09750 1.24840 1.53740 0.86134 0.79755 0.82534 0.77854 1.20576 1.21855 1.21837 1.22619 1.00955 0.91844 1.00775 0.89784 0.90192 0.88632 0.77193 0.90780 0.90422 0.92432 0.92443 0.91754 0.92516 0.78161 0.93498 0.91620 0.91085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.65 9.93 36.00 0.36 -0.29 16 2 C 0.06 0.64 7.29 -82.39 -0.60 0.04 16 3 N -0.27 -3.08 12.35 33.51 0.41 -2.66 16 4 N -0.04 -0.44 13.35 60.35 0.81 0.37 16 5 N -0.38 -2.65 6.97 33.31 0.23 -2.42 16 6 H 0.45 1.33 8.32 -190.34 -1.58 -0.25 16 7 C -0.07 -0.66 7.17 -82.33 -0.59 -1.25 16 8 C 0.59 5.96 7.81 -12.61 -0.10 5.87 16 9 O -0.51 -6.73 14.99 5.26 0.08 -6.65 16 10 N -0.72 -5.77 5.34 -61.45 -0.33 -6.10 16 11 C 0.13 1.27 4.69 -4.04 -0.02 1.25 16 12 C -0.10 -1.07 2.96 -89.51 -0.26 -1.33 16 13 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 14 C -0.12 -1.36 6.19 -25.62 -0.16 -1.52 16 15 C -0.14 -2.30 6.51 -25.08 -0.16 -2.46 16 16 C 0.18 3.23 3.56 -65.94 -0.24 2.99 16 17 H 0.06 1.03 8.09 -51.93 -0.42 0.61 16 18 N -0.72 -17.31 5.23 -51.50 -0.27 -17.58 16 19 C -0.24 -6.49 9.96 -15.06 -0.15 -6.64 16 20 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 21 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 22 N -0.93 -27.69 13.06 55.49 0.72 -26.96 16 23 Si 0.91 21.97 29.55 -169.99 -5.02 16.95 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 27 C -0.12 -1.76 5.98 -25.07 -0.15 -1.91 16 28 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.10 0.86 6.61 -51.93 -0.34 0.52 16 31 H 0.39 1.98 7.62 -40.82 -0.31 1.67 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 35 H 0.06 0.60 7.62 -51.93 -0.40 0.21 16 36 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.38 9.87 7.76 -40.82 -0.32 9.56 16 39 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 40 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.07 1.08 7.73 -51.93 -0.40 0.68 16 LS Contribution 342.87 15.07 5.17 5.17 Total: -1.00 -33.04 342.87 -7.49 -40.53 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -7.12 Total: 5.10 kcal Atomic # 6 Polarization: -3.57 SS G_CDS: -2.17 Total: -5.74 kcal Atomic # 7 Polarization: -56.94 SS G_CDS: 1.58 Total: -55.36 kcal Atomic # 8 Polarization: -6.73 SS G_CDS: 0.08 Total: -6.65 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.04 -7.49 -40.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086772754.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.117 kcal (2) G-P(sol) polarization free energy of solvation -33.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.00 seconds