Wall clock time and date at job start Tue Mar 31 2020 03:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.33319 * 126.81261 * 2 1 4 4 N 1.28519 * 109.43610 * 179.97438 * 3 2 1 5 5 N 1.28708 * 110.64061 * 359.71734 * 4 3 2 6 6 H 0.96995 * 126.03998 * 180.29322 * 5 4 3 7 7 C 1.37005 * 126.81206 * 179.97438 * 2 1 3 8 8 C 1.47230 * 127.19160 * 0.02562 * 7 2 1 9 9 O 1.21622 * 119.99993 * 0.02562 * 8 7 2 10 10 N 1.34774 * 120.00034 * 179.97438 * 8 7 2 11 11 C 1.46507 * 120.00199 * 180.02562 * 10 8 7 12 12 C 1.52993 * 109.47290 * 180.02562 * 11 10 8 13 13 H 1.09008 * 110.01785 * 306.39124 * 12 11 10 14 14 C 1.53872 * 110.07347 * 67.81104 * 12 11 10 15 15 C 1.54263 * 106.59900 * 119.30682 * 14 12 11 16 16 C 1.54885 * 104.19972 * 23.61133 * 15 14 12 17 17 H 1.08999 * 110.91633 * 80.44377 * 16 15 14 18 18 N 1.46494 * 110.76220 * 203.74728 * 16 15 14 19 19 C 1.36945 * 119.99612 * 268.32842 * 18 16 15 20 20 H 1.07999 * 120.00077 * 359.97438 * 19 18 16 21 21 C 1.38812 * 119.99637 * 179.97438 * 19 18 16 22 22 N 1.31617 * 120.00227 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99854 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47057 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.47102 * 119.99824 * 23 21 19 26 26 H 1.48500 * 109.47389 * 240.00173 * 23 21 19 27 27 C 1.54264 * 110.03265 * 185.00128 * 12 11 10 28 28 H 1.09004 * 109.46941 * 270.02252 * 1 2 3 29 29 H 1.08999 * 109.47447 * 30.02273 * 1 2 3 30 30 H 1.09006 * 109.47296 * 150.02462 * 1 2 3 31 31 H 0.97000 * 120.00259 * 0.02562 * 10 8 7 32 32 H 1.09001 * 109.46423 * 60.00014 * 11 10 8 33 33 H 1.08996 * 109.46842 * 300.00359 * 11 10 8 34 34 H 1.09009 * 110.03214 * 238.59199 * 14 12 11 35 35 H 1.08998 * 110.03094 * 359.97162 * 14 12 11 36 36 H 1.08993 * 110.48815 * 264.92919 * 15 14 12 37 37 H 1.09004 * 110.48620 * 142.28820 * 15 14 12 38 38 H 0.96995 * 120.00290 * 88.59733 * 18 16 15 39 39 H 0.97005 * 120.00046 * 179.97438 * 22 21 19 40 40 H 1.09005 * 110.48840 * 98.37867 * 27 12 11 41 41 H 1.08997 * 110.48668 * 335.73539 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3058 1.0674 0.0000 4 7 3.5324 0.6835 0.0005 5 7 3.6056 -0.6014 0.0069 6 1 4.4212 -1.1265 0.0126 7 6 2.3279 -1.0969 0.0005 8 6 1.9222 -2.5122 0.0006 9 8 0.7421 -2.8065 -0.0002 10 7 2.8584 -3.4816 0.0006 11 6 2.4547 -4.8899 0.0001 12 6 3.7008 -5.7777 0.0009 13 1 4.3578 -5.4992 -0.8231 14 6 4.4467 -5.6398 1.3396 15 6 4.4667 -7.0432 1.9796 16 6 4.3010 -8.0098 0.7808 17 1 5.2500 -8.1563 0.2650 18 7 3.7482 -9.2931 1.2209 19 6 4.5881 -10.3155 1.5739 20 1 5.6580 -10.1759 1.5273 21 6 4.0642 -11.5312 1.9914 22 7 2.7603 -11.7015 2.0476 23 14 5.2099 -12.9261 2.4722 24 1 6.6193 -12.4832 2.3219 25 1 4.9594 -13.3076 3.8854 26 1 4.9617 -14.0962 1.5922 27 6 3.2935 -7.2602 -0.1260 28 1 -0.3633 0.0004 1.0277 29 1 -0.3634 0.8898 -0.5142 30 1 -0.3634 -0.8902 -0.5135 31 1 3.7996 -3.2469 0.0009 32 1 1.8609 -5.0973 -0.8901 33 1 1.8604 -5.0978 0.8899 34 1 5.4658 -5.2943 1.1654 35 1 3.9214 -4.9397 1.9893 36 1 3.6375 -7.1559 2.6779 37 1 5.4173 -7.2194 2.4831 38 1 2.7873 -9.4198 1.2586 39 1 2.3942 -12.5512 2.3391 40 1 3.3879 -7.5947 -1.1591 41 1 2.2747 -7.4079 0.2323 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086772754.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:51 Heat of formation + Delta-G solvation = 26.506790 kcal Electronic energy + Delta-G solvation = -22751.290169 eV Core-core repulsion = 19280.724558 eV Total energy + Delta-G solvation = -3470.565611 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.49986 -40.85445 -39.40726 -36.50571 -35.41142 -34.74596 -33.54658 -32.53684 -30.43411 -29.16463 -28.52780 -26.22510 -25.17882 -24.67643 -23.09556 -21.92864 -21.20833 -20.71995 -19.92303 -19.12984 -17.82990 -17.64423 -17.19356 -16.78592 -16.73662 -15.92952 -15.70448 -15.36152 -15.02403 -14.84137 -14.28397 -14.10402 -13.99227 -13.71095 -13.58829 -13.34774 -13.00013 -12.98825 -12.68526 -12.39203 -12.29936 -12.09006 -11.97985 -11.80342 -11.68133 -11.66620 -11.52953 -11.30045 -11.19919 -10.90574 -10.53641 -10.16560 -8.97454 -7.94357 -5.22037 -0.26038 1.10041 1.37526 1.47068 1.47335 1.57191 1.86044 1.90492 2.56312 3.16983 3.38247 3.46265 3.64237 3.73093 3.80158 3.83487 3.92207 4.30931 4.38076 4.49970 4.59791 4.63472 4.65504 4.75365 4.78805 4.79951 4.87758 4.93370 5.09541 5.12475 5.16652 5.22470 5.30806 5.45863 5.50725 5.55315 5.63961 5.64977 6.26268 6.29078 6.90173 7.11643 7.34231 8.13702 8.34073 9.29535 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.042191 B = 0.002467 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.482364 B =11346.883258 C =11750.385398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.049 3.951 3 N -0.296 5.296 4 N -0.053 5.053 5 N -0.348 5.348 6 H 0.469 0.531 7 C -0.070 4.070 8 C 0.597 3.403 9 O -0.543 6.543 10 N -0.703 5.703 11 C 0.133 3.867 12 C -0.085 4.085 13 H 0.106 0.894 14 C -0.110 4.110 15 C -0.141 4.141 16 C 0.163 3.837 17 H 0.055 0.945 18 N -0.737 5.737 19 C -0.235 4.235 20 H 0.076 0.924 21 C -0.080 4.080 22 N -0.971 5.971 23 Si 0.970 3.030 24 H -0.265 1.265 25 H -0.296 1.296 26 H -0.295 1.295 27 C -0.117 4.117 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.413 0.587 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.088 0.912 35 H 0.069 0.931 36 H 0.038 0.962 37 H 0.048 0.952 38 H 0.371 0.629 39 H 0.250 0.750 40 H 0.070 0.930 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.772 23.390 -6.187 24.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.091 4.091 3 N -0.163 5.163 4 N -0.035 5.035 5 N -0.079 5.079 6 H 0.320 0.680 7 C -0.205 4.205 8 C 0.381 3.619 9 O -0.419 6.419 10 N -0.355 5.355 11 C 0.010 3.990 12 C -0.104 4.104 13 H 0.125 0.875 14 C -0.148 4.148 15 C -0.181 4.181 16 C 0.054 3.946 17 H 0.073 0.927 18 N -0.375 5.375 19 C -0.367 4.367 20 H 0.094 0.906 21 C -0.272 4.272 22 N -0.623 5.623 23 Si 0.799 3.201 24 H -0.189 1.189 25 H -0.224 1.224 26 H -0.222 1.222 27 C -0.156 4.156 28 H 0.107 0.893 29 H 0.109 0.891 30 H 0.106 0.894 31 H 0.250 0.750 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.106 0.894 35 H 0.087 0.913 36 H 0.057 0.943 37 H 0.067 0.933 38 H 0.203 0.797 39 H 0.058 0.942 40 H 0.089 0.911 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.805 24.417 -6.169 25.340 hybrid contribution 0.404 -2.463 0.592 2.565 sum 3.208 21.954 -5.578 22.878 Atomic orbital electron populations 1.20368 0.83934 1.04705 1.04391 1.22715 0.99567 0.87090 0.99766 1.74968 0.95680 1.26787 1.18816 1.78139 1.15746 0.93184 1.16413 1.45423 1.09053 1.06385 1.47037 0.67983 1.21933 0.85570 0.95905 1.17045 1.16734 0.85779 0.82468 0.76907 1.90861 1.17961 1.82281 1.50798 1.45717 1.09694 1.06102 1.74015 1.21495 0.97049 0.78075 1.02376 1.21847 0.95808 0.93294 0.99425 0.87535 1.22173 1.01325 0.95873 0.95390 1.22905 1.00051 0.96217 0.98947 1.21493 0.95651 0.84337 0.93112 0.92681 1.42635 1.05549 1.10254 1.79100 1.19684 0.90497 0.91929 1.34630 0.90572 1.25552 0.97158 1.00692 1.03790 1.69822 1.11501 1.25084 1.55851 0.85118 0.78700 0.79401 0.76838 1.18889 1.22354 1.22194 1.22504 0.99056 0.94176 0.99905 0.89255 0.89057 0.89389 0.75014 0.90986 0.92127 0.89375 0.91259 0.94273 0.93315 0.79696 0.94152 0.91141 0.92551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.21 9.93 71.24 0.71 -0.50 16 2 C 0.05 0.95 7.29 42.04 0.31 1.26 16 3 N -0.30 -6.38 12.35 -47.89 -0.59 -6.97 16 4 N -0.05 -0.96 13.35 37.02 0.49 -0.46 16 5 N -0.35 -3.95 6.97 -48.52 -0.34 -4.29 16 6 H 0.47 1.00 8.32 -219.91 -1.83 -0.83 16 7 C -0.07 -1.13 7.17 40.40 0.29 -0.84 16 8 C 0.60 10.74 7.81 86.61 0.68 11.42 16 9 O -0.54 -13.79 14.99 -4.10 -0.06 -13.85 16 10 N -0.70 -8.94 5.34 -466.57 -2.49 -11.44 16 11 C 0.13 2.33 4.69 86.38 0.40 2.74 16 12 C -0.08 -1.48 2.96 -10.07 -0.03 -1.51 16 13 H 0.11 1.31 8.14 -2.38 -0.02 1.29 16 14 C -0.11 -2.05 6.19 31.32 0.19 -1.86 16 15 C -0.14 -4.32 6.51 31.67 0.21 -4.12 16 16 C 0.16 5.79 3.56 46.28 0.16 5.96 16 17 H 0.06 1.97 8.09 -2.39 -0.02 1.95 16 18 N -0.74 -35.93 5.23 -316.85 -1.66 -37.59 16 19 C -0.24 -12.76 9.96 84.03 0.84 -11.93 16 20 H 0.08 3.95 7.83 -2.91 -0.02 3.93 16 21 C -0.08 -4.55 5.50 84.86 0.47 -4.08 16 22 N -0.97 -59.27 13.06 21.65 0.28 -58.99 16 23 Si 0.97 45.62 29.55 68.60 2.03 47.65 16 24 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 25 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 26 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 27 C -0.12 -3.21 5.98 31.67 0.19 -3.02 16 28 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.09 1.55 6.61 -2.38 -0.02 1.54 16 31 H 0.41 2.22 7.62 -92.71 -0.71 1.52 16 32 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 35 H 0.07 1.19 7.62 -2.39 -0.02 1.17 16 36 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 38 H 0.37 19.72 7.76 -92.71 -0.72 19.00 16 39 H 0.25 14.79 8.31 -92.70 -0.77 14.02 16 40 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 41 H 0.06 1.71 7.73 -2.39 -0.02 1.69 16 Total: -1.00 -73.40 342.87 -0.10 -73.49 By element: Atomic # 1 Polarization: 21.10 SS G_CDS: -2.17 Total: 18.93 kcal Atomic # 6 Polarization: -10.90 SS G_CDS: 4.41 Total: -6.48 kcal Atomic # 7 Polarization: -115.43 SS G_CDS: -4.30 Total: -119.73 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: -0.06 Total: -13.85 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -73.40 -0.10 -73.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086772754.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.999 kcal (2) G-P(sol) polarization free energy of solvation -73.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds