Wall clock time and date at job start Tue Mar 31 2020 03:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46643 * 2 1 4 4 H 1.08994 * 109.99807 * 304.61609 * 3 2 1 5 5 C 1.54340 * 109.98751 * 183.58340 * 3 2 1 6 6 H 1.09002 * 110.51407 * 336.97573 * 5 3 2 7 7 N 1.46498 * 110.85067 * 100.19520 * 5 3 2 8 8 C 1.34774 * 120.00395 * 200.14331 * 7 5 3 9 9 O 1.21601 * 119.99586 * 0.02562 * 8 7 5 10 10 C 1.47517 * 120.00056 * 180.02562 * 8 7 5 11 11 C 1.36602 * 125.77035 * 179.71649 * 10 8 7 12 12 N 1.34806 * 106.84090 * 179.89720 * 11 10 8 13 13 C 1.46507 * 126.59501 * 180.13056 * 12 11 10 14 14 N 1.40203 * 106.81295 * 0.36009 * 12 11 10 15 15 N 1.28761 * 108.36703 * 359.77037 * 14 12 11 16 16 C 1.55155 * 103.01949 * 218.66416 * 5 3 2 17 17 C 1.54919 * 101.58150 * 35.30862 * 16 5 3 18 18 N 1.47019 * 109.88134 * 65.71875 * 3 2 1 19 19 C 1.36934 * 125.65134 * 298.38829 * 18 3 2 20 20 H 1.08009 * 119.99580 * 333.71688 * 19 18 3 21 21 C 1.38804 * 120.00285 * 153.71028 * 19 18 3 22 22 N 1.31621 * 120.00316 * 334.84121 * 21 19 18 23 23 Si 1.86803 * 119.99924 * 154.83885 * 21 19 18 24 24 H 1.48504 * 109.46817 * 90.00557 * 23 21 19 25 25 H 1.48499 * 109.47385 * 330.00167 * 23 21 19 26 26 H 1.48505 * 109.47293 * 210.00051 * 23 21 19 27 27 H 1.09000 * 109.47383 * 291.79134 * 1 2 3 28 28 H 1.09006 * 109.47178 * 51.79643 * 1 2 3 29 29 H 1.09003 * 109.47043 * 171.79480 * 1 2 3 30 30 H 1.09000 * 109.47428 * 239.99996 * 2 1 3 31 31 H 1.08996 * 109.47296 * 119.99555 * 2 1 3 32 32 H 0.97006 * 119.99848 * 20.15202 * 7 5 3 33 33 H 1.08005 * 126.57748 * 0.04130 * 11 10 8 34 34 H 1.08994 * 109.47216 * 270.29780 * 13 12 11 35 35 H 1.08999 * 109.46814 * 30.30014 * 13 12 11 36 36 H 1.08997 * 109.46949 * 150.29518 * 13 12 11 37 37 H 1.08999 * 111.00589 * 277.23090 * 16 5 3 38 38 H 1.09000 * 111.00554 * 153.37944 * 16 5 3 39 39 H 1.08997 * 110.36502 * 204.14890 * 17 16 5 40 40 H 1.09001 * 110.36410 * 81.82771 * 17 16 5 41 41 H 0.96996 * 119.99635 * 353.73227 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6155 1.9879 -0.8429 5 6 3.5806 1.4576 -0.0907 6 1 3.9933 0.5136 0.2653 7 7 4.0196 1.7330 -1.4609 8 6 5.2661 1.3986 -1.8492 9 8 6.0262 0.8679 -1.0623 10 6 5.7083 1.6764 -3.2288 11 6 6.9414 1.3937 -3.7443 12 7 6.9308 1.8027 -5.0288 13 6 8.0352 1.7029 -5.9863 14 7 5.6615 2.3468 -5.2708 15 7 4.9683 2.2558 -4.1895 16 6 3.9751 2.6213 0.8566 17 6 2.9032 2.4949 1.9678 18 7 1.6705 2.1035 1.2603 19 6 0.3931 2.3152 1.7059 20 1 -0.4195 2.3937 0.9986 21 6 0.1425 2.4288 3.0664 22 7 0.9575 1.8685 3.9348 23 14 -1.3516 3.3770 3.6649 24 1 -2.5094 2.4543 3.7813 25 1 -1.6737 4.4559 2.6967 26 1 -1.0594 3.9745 4.9927 27 1 -0.3634 0.3815 0.9542 28 1 -0.3634 0.6356 -0.8076 29 1 -0.3633 -1.0172 -0.1467 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 3.4132 2.1561 -2.0887 33 1 7.7657 0.9293 -3.2235 34 1 8.6490 2.6017 -5.9280 35 1 8.6444 0.8308 -5.7486 36 1 7.6338 1.6018 -6.9946 37 1 3.8990 3.5822 0.3478 38 1 4.9764 2.4735 1.2611 39 1 2.7641 3.4516 2.4713 40 1 3.1894 1.7258 2.6852 41 1 1.6806 1.3010 3.6250 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087561037.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:42:37 Heat of formation + Delta-G solvation = 57.375643 kcal Electronic energy + Delta-G solvation = -23698.730314 eV Core-core repulsion = 20229.503277 eV Total energy + Delta-G solvation = -3469.227037 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.22971 -40.93500 -39.35348 -35.88266 -35.51982 -34.27072 -33.63552 -32.06103 -30.43934 -28.93965 -28.27045 -26.38811 -24.69953 -23.48762 -23.17464 -22.12736 -21.65235 -21.13762 -19.35911 -19.06517 -17.65232 -17.25714 -17.11402 -16.23275 -16.13677 -15.71698 -15.59136 -15.54490 -15.18801 -14.84847 -14.60408 -14.13447 -14.03997 -13.95048 -13.68822 -13.34326 -13.14317 -12.82121 -12.66038 -12.51693 -12.29018 -12.17912 -11.88207 -11.84209 -11.72476 -11.55762 -11.37224 -11.33549 -11.25285 -10.44252 -10.42028 -10.05240 -8.90476 -8.16308 -5.30451 0.14266 0.57414 1.17079 1.60911 1.68826 1.85359 2.02139 2.19471 2.68948 3.14489 3.28348 3.42614 3.55022 3.73171 3.78020 3.88748 3.95796 4.11381 4.28998 4.38586 4.38919 4.43871 4.50698 4.57757 4.67627 4.69643 4.77647 4.88833 4.95194 5.00644 5.06946 5.15377 5.24303 5.32997 5.44716 5.53926 5.65267 5.85798 6.37973 6.41881 6.86851 6.98351 7.09070 7.76794 8.38175 9.10118 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.031717 B = 0.003355 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.585739 B = 8343.961281 C = 8517.891625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.118 4.118 3 C 0.154 3.846 4 H 0.046 0.954 5 C 0.152 3.848 6 H 0.086 0.914 7 N -0.695 5.695 8 C 0.607 3.393 9 O -0.566 6.566 10 C -0.125 4.125 11 C 0.113 3.887 12 N -0.351 5.351 13 C 0.074 3.926 14 N -0.092 5.092 15 N -0.228 5.228 16 C -0.128 4.128 17 C 0.149 3.851 18 N -0.607 5.607 19 C -0.314 4.314 20 H 0.061 0.939 21 C -0.079 4.079 22 N -0.947 5.947 23 Si 1.112 2.888 24 H -0.284 1.284 25 H -0.276 1.276 26 H -0.295 1.295 27 H 0.054 0.946 28 H 0.048 0.952 29 H 0.051 0.949 30 H 0.067 0.933 31 H 0.034 0.966 32 H 0.413 0.587 33 H 0.240 0.760 34 H 0.108 0.892 35 H 0.131 0.869 36 H 0.109 0.891 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.025 0.975 40 H 0.007 0.993 41 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.345 -1.555 -20.369 25.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.157 4.157 3 C 0.048 3.952 4 H 0.063 0.937 5 C 0.047 3.953 6 H 0.104 0.896 7 N -0.345 5.345 8 C 0.392 3.608 9 O -0.445 6.445 10 C -0.266 4.266 11 C -0.046 4.046 12 N -0.135 5.135 13 C -0.064 4.064 14 N -0.073 5.073 15 N -0.101 5.101 16 C -0.168 4.168 17 C 0.023 3.977 18 N -0.333 5.333 19 C -0.443 4.443 20 H 0.079 0.921 21 C -0.275 4.275 22 N -0.590 5.590 23 Si 0.937 3.063 24 H -0.211 1.211 25 H -0.201 1.201 26 H -0.221 1.221 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.053 0.947 32 H 0.249 0.751 33 H 0.256 0.744 34 H 0.126 0.874 35 H 0.149 0.851 36 H 0.128 0.872 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.044 0.956 40 H 0.025 0.975 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 14.122 -0.681 -19.563 24.138 hybrid contribution 1.045 -0.940 -0.549 1.509 sum 15.168 -1.621 -20.112 25.243 Atomic orbital electron populations 1.21769 0.95662 1.00213 1.02317 1.21811 0.97013 0.96982 0.99914 1.21305 0.91154 0.92591 0.90195 0.93672 1.21756 0.94083 0.98349 0.81161 0.89615 1.45696 1.14253 1.61406 1.13108 1.16980 0.81608 0.77382 0.84796 1.90788 1.54387 1.45225 1.54088 1.21390 0.94904 1.14188 0.96084 1.23854 0.99481 0.96173 0.85087 1.50745 1.13308 1.39403 1.10058 1.22746 0.84895 1.06875 0.91921 1.81913 0.88851 1.19760 1.16733 1.74616 1.26188 1.11613 0.97700 1.23055 0.98433 0.98628 0.96661 1.21399 0.86336 0.96458 0.93545 1.44715 1.01618 1.66225 1.20725 1.19784 0.84758 1.47145 0.92568 0.92102 1.27041 1.05972 1.01464 0.93045 1.70844 1.20159 1.31219 1.36786 0.82902 0.72567 0.75646 0.75155 1.21066 1.20148 1.22096 0.92726 0.93318 0.93029 0.91435 0.94666 0.75064 0.74399 0.87355 0.85118 0.87243 0.90722 0.90344 0.95621 0.97480 0.93448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.60 8.98 71.98 0.65 -4.96 16 2 C -0.12 -4.60 5.47 30.60 0.17 -4.43 16 3 C 0.15 6.26 3.00 45.35 0.14 6.40 16 4 H 0.05 1.81 7.69 -2.39 -0.02 1.79 16 5 C 0.15 5.51 2.76 46.19 0.13 5.64 16 6 H 0.09 3.31 7.40 -2.39 -0.02 3.29 16 7 N -0.69 -21.43 5.20 -440.06 -2.29 -23.72 16 8 C 0.61 18.20 7.82 86.69 0.68 18.87 16 9 O -0.57 -19.47 16.59 -4.04 -0.07 -19.53 16 10 C -0.13 -3.10 6.99 40.82 0.29 -2.82 16 11 C 0.11 1.80 11.31 83.85 0.95 2.75 16 12 N -0.35 -4.91 4.03 -368.58 -1.49 -6.40 16 13 C 0.07 0.14 11.51 127.77 1.47 1.61 16 14 N -0.09 -2.10 13.78 37.02 0.51 -1.59 16 15 N -0.23 -6.07 12.04 -50.00 -0.60 -6.67 16 16 C -0.13 -4.90 6.77 31.99 0.22 -4.68 16 17 C 0.15 7.11 5.56 86.86 0.48 7.59 16 18 N -0.61 -30.11 2.92 -668.21 -1.95 -32.06 16 19 C -0.31 -17.08 7.22 84.03 0.61 -16.47 16 20 H 0.06 3.30 7.24 -2.91 -0.02 3.28 16 21 C -0.08 -4.47 5.17 84.86 0.44 -4.04 16 22 N -0.95 -58.20 13.05 21.65 0.28 -57.92 16 23 Si 1.11 51.42 29.99 68.60 2.06 53.48 16 24 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 25 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 26 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 27 H 0.05 2.57 5.52 -2.39 -0.01 2.56 16 28 H 0.05 1.79 8.13 -2.38 -0.02 1.77 16 29 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.41 11.90 8.00 -92.70 -0.74 11.16 16 33 H 0.24 1.99 8.06 -2.91 -0.02 1.97 16 34 H 0.11 -0.09 8.14 -2.39 -0.02 -0.11 16 35 H 0.13 -0.53 8.14 -2.39 -0.02 -0.55 16 36 H 0.11 0.10 8.14 -2.39 -0.02 0.08 16 37 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 38 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 39 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.01 0.39 6.73 -2.39 -0.02 0.37 16 41 H 0.26 15.99 6.20 -92.71 -0.57 15.42 16 Total: -1.00 -74.96 339.74 3.16 -71.80 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: 0.50 Total: 17.14 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: 6.20 Total: 5.47 kcal Atomic # 7 Polarization: -122.82 SS G_CDS: -5.54 Total: -128.35 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: -0.07 Total: -19.53 kcal Atomic # 14 Polarization: 51.42 SS G_CDS: 2.06 Total: 53.48 kcal Total: -74.96 3.16 -71.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087561037.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.175 kcal (2) G-P(sol) polarization free energy of solvation -74.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds