Wall clock time and date at job start Tue Mar 31 2020 03:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46877 * 2 1 4 4 H 1.08997 * 110.00247 * 56.18301 * 3 2 1 5 5 C 1.54319 * 109.88122 * 295.08333 * 3 2 1 6 6 H 1.09006 * 110.71957 * 336.75346 * 5 3 2 7 7 N 1.46502 * 110.72168 * 100.03135 * 5 3 2 8 8 C 1.34771 * 119.99704 * 199.97378 * 7 5 3 9 9 O 1.21283 * 120.00449 * 359.97438 * 8 7 5 10 10 C 1.50705 * 119.99786 * 179.97438 * 8 7 5 11 11 N 1.46494 * 109.47255 * 180.02562 * 10 8 7 12 12 N 1.28596 * 124.61870 * 269.69653 * 11 10 8 13 13 C 1.31385 * 108.72119 * 179.83060 * 12 11 10 14 14 C 1.39686 * 105.89297 * 0.41445 * 13 12 11 15 15 N 1.28597 * 124.61907 * 90.00086 * 11 10 8 16 16 C 1.55162 * 102.94125 * 218.39567 * 5 3 2 17 17 C 1.54911 * 101.58279 * 35.49869 * 16 5 3 18 18 N 1.47024 * 109.87510 * 177.27464 * 3 2 1 19 19 C 1.36932 * 125.65201 * 298.39101 * 18 3 2 20 20 H 1.07997 * 119.99981 * 348.07873 * 19 18 3 21 21 C 1.38813 * 119.99911 * 168.08382 * 19 18 3 22 22 N 1.31617 * 120.00231 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 119.99964 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46843 * 89.99356 * 23 21 19 25 25 H 1.48492 * 109.47090 * 209.99589 * 23 21 19 26 26 H 1.48499 * 109.46884 * 329.99964 * 23 21 19 27 27 H 1.09003 * 109.47200 * 305.49509 * 1 2 3 28 28 H 1.09000 * 109.46772 * 65.49279 * 1 2 3 29 29 H 1.08994 * 109.47075 * 185.49385 * 1 2 3 30 30 H 1.08993 * 109.47118 * 239.99487 * 2 1 3 31 31 H 1.09003 * 109.46872 * 119.99491 * 2 1 3 32 32 H 0.96994 * 119.99333 * 19.97446 * 7 5 3 33 33 H 1.09007 * 109.46937 * 300.00593 * 10 8 7 34 34 H 1.08999 * 109.47025 * 59.99844 * 10 8 7 35 35 H 1.07989 * 127.05491 * 180.16327 * 13 12 11 36 36 H 1.08001 * 127.04411 * 179.72476 * 14 13 12 37 37 H 1.08994 * 111.00867 * 153.57794 * 16 5 3 38 38 H 1.09005 * 111.00159 * 277.42832 * 16 5 3 39 39 H 1.09004 * 110.36033 * 81.83370 * 17 16 5 40 40 H 1.08998 * 110.36871 * 204.04065 * 17 16 5 41 41 H 0.97003 * 120.00297 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6268 1.9841 0.8509 5 6 1.6349 2.1424 -1.3144 6 1 1.4563 1.4103 -2.1019 7 7 0.4539 2.9849 -1.1103 8 6 -0.2984 3.3574 -2.1647 9 8 0.0025 2.9955 -3.2825 10 6 -1.5136 4.2236 -1.9548 11 7 -2.1550 4.4863 -3.2454 12 7 -1.8823 5.4862 -4.0067 13 6 -2.6345 5.4152 -5.0816 14 6 -3.4217 4.2723 -4.9229 15 7 -3.0713 3.7514 -3.7688 16 6 2.8782 3.0103 -1.6434 17 6 4.0316 2.1008 -1.1513 18 7 3.5087 1.4535 0.0657 19 6 4.2657 0.9460 1.0877 20 1 3.7968 0.6656 2.0193 21 6 5.6358 0.7920 0.9264 22 7 6.2072 1.1334 -0.2091 23 14 6.6686 0.1003 2.3208 24 1 6.7387 -1.3780 2.1987 25 1 8.0388 0.6684 2.2508 26 1 6.0491 0.4606 3.6214 27 1 -0.3634 0.5967 0.8367 28 1 -0.3633 0.4263 -0.9351 29 1 -0.3633 -1.0229 0.0984 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 0.2135 3.2746 -0.2164 33 1 -2.2163 3.7108 -1.2978 34 1 -1.2130 5.1671 -1.4993 35 1 -2.6451 6.1021 -5.9148 36 1 -4.1660 3.8946 -5.6083 37 1 2.9547 3.1929 -2.7153 38 1 2.8572 3.9489 -1.0894 39 1 4.2723 1.3518 -1.9058 40 1 4.9124 2.6985 -0.9167 41 1 7.1646 1.0255 -0.3220 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087587610.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:42:50 Heat of formation + Delta-G solvation = 103.219681 kcal Electronic energy + Delta-G solvation = -23829.155663 eV Core-core repulsion = 20361.916573 eV Total energy + Delta-G solvation = -3467.239090 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.62498 -39.89340 -37.83371 -34.18798 -33.86156 -32.83136 -32.49395 -31.77136 -29.38416 -28.34463 -26.44880 -24.47365 -22.98163 -22.70699 -21.84030 -20.69532 -20.25687 -19.65325 -17.70061 -17.63081 -16.87551 -16.04227 -15.72894 -15.58766 -14.84203 -14.76741 -14.51334 -14.03158 -13.91789 -13.78701 -13.25407 -12.78630 -12.73805 -12.04499 -11.99032 -11.73487 -11.70518 -11.21187 -10.93337 -10.89135 -10.88431 -10.67262 -10.53166 -10.43489 -10.39951 -10.14146 -10.09046 -9.79973 -9.68622 -9.33295 -8.80158 -8.63620 -6.87949 -5.78056 -3.15115 1.64439 2.04627 2.41006 2.47576 3.17715 3.36353 3.41624 3.43397 4.03813 4.41569 4.52044 4.63659 4.69936 4.95464 5.17755 5.23930 5.30082 5.44199 5.49877 5.67863 5.73556 5.78334 5.88264 5.99041 6.07001 6.16237 6.17433 6.34270 6.39595 6.48479 6.49250 6.62346 6.65199 6.87262 7.05748 7.45470 7.49409 7.56373 7.75597 8.13038 8.22669 8.23170 9.13750 9.74829 10.41163 11.32819 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.034888 B = 0.003357 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.374892 B = 8338.645359 C = 8801.626249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.133 4.133 3 C 0.162 3.838 4 H 0.036 0.964 5 C 0.140 3.860 6 H 0.093 0.907 7 N -0.707 5.707 8 C 0.500 3.500 9 O -0.522 6.522 10 C 0.121 3.879 11 N -0.142 5.142 12 N -0.280 5.280 13 C -0.027 4.027 14 C -0.027 4.027 15 N -0.281 5.281 16 C -0.156 4.156 17 C 0.172 3.828 18 N -0.594 5.594 19 C -0.229 4.229 20 H 0.076 0.924 21 C -0.004 4.004 22 N -0.917 5.917 23 Si 0.911 3.089 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.281 1.281 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.045 0.955 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.400 0.600 33 H 0.136 0.864 34 H 0.137 0.863 35 H 0.197 0.803 36 H 0.197 0.803 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.025 0.975 40 H 0.081 0.919 41 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.926 7.164 -3.631 19.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.173 4.173 3 C 0.054 3.946 4 H 0.054 0.946 5 C 0.035 3.965 6 H 0.111 0.889 7 N -0.358 5.358 8 C 0.282 3.718 9 O -0.397 6.397 10 C -0.004 4.004 11 N -0.042 5.042 12 N -0.121 5.121 13 C -0.210 4.210 14 C -0.210 4.210 15 N -0.122 5.122 16 C -0.196 4.196 17 C 0.047 3.953 18 N -0.319 5.319 19 C -0.357 4.357 20 H 0.094 0.906 21 C -0.201 4.201 22 N -0.564 5.564 23 Si 0.741 3.259 24 H -0.215 1.215 25 H -0.217 1.217 26 H -0.206 1.206 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.235 0.765 33 H 0.154 0.846 34 H 0.155 0.845 35 H 0.214 0.786 36 H 0.214 0.786 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.043 0.957 40 H 0.099 0.901 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -16.831 6.608 -3.158 18.355 hybrid contribution 0.091 -0.184 0.175 0.270 sum -16.740 6.424 -2.983 18.177 Atomic orbital electron populations 1.21776 0.97219 1.00662 1.00832 1.22033 0.93612 0.99134 1.02492 1.21057 0.87169 0.93345 0.93028 0.94601 1.22162 0.83104 0.92268 0.98924 0.88938 1.45951 1.28266 1.52364 1.09219 1.20325 0.84171 0.81476 0.85787 1.90793 1.70786 1.54732 1.23388 1.21737 0.95047 1.03501 0.80090 1.47306 1.25532 1.14569 1.16769 1.74056 1.22736 1.11327 1.03963 1.24776 0.97061 1.00892 0.98264 1.24770 1.04216 0.96466 0.95566 1.74036 1.06057 1.20791 1.11290 1.23432 0.96611 0.99087 1.00442 1.21494 0.93374 0.92978 0.87461 1.44458 0.98253 1.68369 1.20797 1.18949 0.89119 1.35699 0.91915 0.90588 1.24878 0.97010 1.01039 0.97163 1.69920 1.10150 1.52461 1.23819 0.86139 0.79758 0.78801 0.81153 1.21521 1.21662 1.20639 0.93384 0.93388 0.93587 0.92345 0.91630 0.76523 0.84599 0.84545 0.78605 0.78613 0.91901 0.91925 0.95669 0.90129 0.93583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.57 37.16 0.36 -1.70 16 2 C -0.13 -2.37 5.41 -26.73 -0.14 -2.52 16 3 C 0.16 3.06 2.94 -66.95 -0.20 2.87 16 4 H 0.04 0.65 7.69 -51.93 -0.40 0.25 16 5 C 0.14 2.40 1.92 -66.09 -0.13 2.28 16 6 H 0.09 1.78 7.34 -51.93 -0.38 1.40 16 7 N -0.71 -9.16 4.94 -52.03 -0.26 -9.41 16 8 C 0.50 6.91 7.90 -10.99 -0.09 6.82 16 9 O -0.52 -9.86 16.16 5.56 0.09 -9.77 16 10 C 0.12 1.19 7.02 -5.19 -0.04 1.16 16 11 N -0.14 -1.85 3.44 -11.66 -0.04 -1.89 16 12 N -0.28 -3.76 12.05 30.68 0.37 -3.39 16 13 C -0.03 -0.28 12.20 -17.20 -0.21 -0.49 16 14 C -0.03 -0.28 12.20 -17.21 -0.21 -0.49 16 15 N -0.28 -3.72 12.05 30.68 0.37 -3.35 16 16 C -0.16 -3.00 6.77 -24.58 -0.17 -3.17 16 17 C 0.17 4.10 5.46 -2.53 -0.01 4.08 16 18 N -0.59 -14.30 3.13 -162.57 -0.51 -14.81 16 19 C -0.23 -6.06 9.77 -15.06 -0.15 -6.20 16 20 H 0.08 1.95 7.83 -52.49 -0.41 1.54 16 21 C 0.00 -0.11 5.47 -17.43 -0.10 -0.20 16 22 N -0.92 -26.29 10.47 55.49 0.58 -25.71 16 23 Si 0.91 21.52 29.55 -169.99 -5.02 16.50 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.68 7.38 -51.93 -0.38 0.29 16 29 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 1.14 8.08 -51.93 -0.42 0.72 16 31 H 0.06 1.26 7.91 -51.93 -0.41 0.84 16 32 H 0.40 3.88 8.31 -40.82 -0.34 3.54 16 33 H 0.14 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.14 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.20 1.28 8.06 -52.49 -0.42 0.86 16 36 H 0.20 1.26 8.06 -52.49 -0.42 0.84 16 37 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.03 0.66 8.11 -51.93 -0.42 0.24 16 40 H 0.08 2.14 6.73 -51.93 -0.35 1.79 16 41 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 342.37 15.07 5.16 5.16 Total: -1.00 -34.97 342.37 -6.37 -41.34 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -6.03 Total: 2.90 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: -1.08 Total: 2.43 kcal Atomic # 7 Polarization: -59.08 SS G_CDS: 0.52 Total: -58.56 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.09 Total: -9.77 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.97 -6.37 -41.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087587610.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.557 kcal (2) G-P(sol) polarization free energy of solvation -34.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds