Wall clock time and date at job start Tue Mar 31 2020 03:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46877 * 2 1 4 4 H 1.08997 * 110.00247 * 56.18301 * 3 2 1 5 5 C 1.54319 * 109.88122 * 295.08333 * 3 2 1 6 6 H 1.09006 * 110.71957 * 336.75346 * 5 3 2 7 7 N 1.46502 * 110.72168 * 100.03135 * 5 3 2 8 8 C 1.34771 * 119.99704 * 199.97378 * 7 5 3 9 9 O 1.21283 * 120.00449 * 359.97438 * 8 7 5 10 10 C 1.50705 * 119.99786 * 179.97438 * 8 7 5 11 11 N 1.46494 * 109.47255 * 180.02562 * 10 8 7 12 12 N 1.28596 * 124.61870 * 269.69653 * 11 10 8 13 13 C 1.31385 * 108.72119 * 179.83060 * 12 11 10 14 14 C 1.39686 * 105.89297 * 0.41445 * 13 12 11 15 15 N 1.28597 * 124.61907 * 90.00086 * 11 10 8 16 16 C 1.55162 * 102.94125 * 218.39567 * 5 3 2 17 17 C 1.54911 * 101.58279 * 35.49869 * 16 5 3 18 18 N 1.47024 * 109.87510 * 177.27464 * 3 2 1 19 19 C 1.36932 * 125.65201 * 298.39101 * 18 3 2 20 20 H 1.07997 * 119.99981 * 348.07873 * 19 18 3 21 21 C 1.38813 * 119.99911 * 168.08382 * 19 18 3 22 22 N 1.31617 * 120.00231 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 119.99964 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46843 * 89.99356 * 23 21 19 25 25 H 1.48492 * 109.47090 * 209.99589 * 23 21 19 26 26 H 1.48499 * 109.46884 * 329.99964 * 23 21 19 27 27 H 1.09003 * 109.47200 * 305.49509 * 1 2 3 28 28 H 1.09000 * 109.46772 * 65.49279 * 1 2 3 29 29 H 1.08994 * 109.47075 * 185.49385 * 1 2 3 30 30 H 1.08993 * 109.47118 * 239.99487 * 2 1 3 31 31 H 1.09003 * 109.46872 * 119.99491 * 2 1 3 32 32 H 0.96994 * 119.99333 * 19.97446 * 7 5 3 33 33 H 1.09007 * 109.46937 * 300.00593 * 10 8 7 34 34 H 1.08999 * 109.47025 * 59.99844 * 10 8 7 35 35 H 1.07989 * 127.05491 * 180.16327 * 13 12 11 36 36 H 1.08001 * 127.04411 * 179.72476 * 14 13 12 37 37 H 1.08994 * 111.00867 * 153.57794 * 16 5 3 38 38 H 1.09005 * 111.00159 * 277.42832 * 16 5 3 39 39 H 1.09004 * 110.36033 * 81.83370 * 17 16 5 40 40 H 1.08998 * 110.36871 * 204.04065 * 17 16 5 41 41 H 0.97003 * 120.00297 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6268 1.9841 0.8509 5 6 1.6349 2.1424 -1.3144 6 1 1.4563 1.4103 -2.1019 7 7 0.4539 2.9849 -1.1103 8 6 -0.2984 3.3574 -2.1647 9 8 0.0025 2.9955 -3.2825 10 6 -1.5136 4.2236 -1.9548 11 7 -2.1550 4.4863 -3.2454 12 7 -1.8823 5.4862 -4.0067 13 6 -2.6345 5.4152 -5.0816 14 6 -3.4217 4.2723 -4.9229 15 7 -3.0713 3.7514 -3.7688 16 6 2.8782 3.0103 -1.6434 17 6 4.0316 2.1008 -1.1513 18 7 3.5087 1.4535 0.0657 19 6 4.2657 0.9460 1.0877 20 1 3.7968 0.6656 2.0193 21 6 5.6358 0.7920 0.9264 22 7 6.2072 1.1334 -0.2091 23 14 6.6686 0.1003 2.3208 24 1 6.7387 -1.3780 2.1987 25 1 8.0388 0.6684 2.2508 26 1 6.0491 0.4606 3.6214 27 1 -0.3634 0.5967 0.8367 28 1 -0.3633 0.4263 -0.9351 29 1 -0.3633 -1.0229 0.0984 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 0.2135 3.2746 -0.2164 33 1 -2.2163 3.7108 -1.2978 34 1 -1.2130 5.1671 -1.4993 35 1 -2.6451 6.1021 -5.9148 36 1 -4.1660 3.8946 -5.6083 37 1 2.9547 3.1929 -2.7153 38 1 2.8572 3.9489 -1.0894 39 1 4.2723 1.3518 -1.9058 40 1 4.9124 2.6985 -0.9167 41 1 7.1646 1.0255 -0.3220 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087587610.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:42:49 Heat of formation + Delta-G solvation = 77.261506 kcal Electronic energy + Delta-G solvation = -23830.281294 eV Core-core repulsion = 20361.916573 eV Total energy + Delta-G solvation = -3468.364721 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.43983 -41.15545 -39.36374 -35.72120 -34.75738 -34.29308 -33.49447 -33.34524 -31.02937 -29.46296 -27.88054 -26.31898 -23.99106 -23.77508 -23.00188 -22.18412 -21.66144 -21.08706 -18.86884 -18.69704 -18.47442 -17.34015 -16.76491 -16.68162 -16.53282 -15.84615 -15.64545 -15.52393 -15.32152 -14.98516 -14.61821 -14.33293 -13.92604 -13.56675 -13.41166 -13.23114 -12.87923 -12.74396 -12.60655 -12.53377 -12.23688 -12.07272 -11.99366 -11.93623 -11.75546 -11.57676 -11.42363 -11.30465 -11.28702 -10.70087 -10.22081 -10.10961 -8.86439 -7.84710 -5.23167 0.77167 1.29377 1.41741 1.47452 1.48794 1.57254 1.65624 2.11628 2.51012 3.33844 3.35247 3.44507 3.66168 3.80971 3.86956 4.03244 4.06992 4.16123 4.21444 4.35214 4.39347 4.59141 4.61704 4.63104 4.72233 4.82996 4.98571 5.10355 5.11552 5.20336 5.27030 5.38218 5.44262 5.49282 5.53732 5.62142 5.70601 5.71498 6.22312 6.42930 7.07972 7.10316 7.40639 7.76150 8.42131 9.25578 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.034888 B = 0.003357 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.374892 B = 8338.645359 C = 8801.626249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.128 4.128 3 C 0.160 3.840 4 H 0.062 0.938 5 C 0.160 3.840 6 H 0.071 0.929 7 N -0.690 5.690 8 C 0.502 3.498 9 O -0.577 6.577 10 C 0.122 3.878 11 N -0.157 5.157 12 N -0.313 5.313 13 C -0.027 4.027 14 C -0.027 4.027 15 N -0.311 5.311 16 C -0.141 4.141 17 C 0.180 3.820 18 N -0.613 5.613 19 C -0.230 4.230 20 H 0.086 0.914 21 C -0.065 4.065 22 N -0.952 5.952 23 Si 0.975 3.025 24 H -0.290 1.290 25 H -0.298 1.298 26 H -0.264 1.264 27 H 0.073 0.927 28 H 0.047 0.953 29 H 0.057 0.943 30 H 0.031 0.969 31 H 0.051 0.949 32 H 0.421 0.579 33 H 0.173 0.827 34 H 0.169 0.831 35 H 0.230 0.770 36 H 0.231 0.769 37 H 0.058 0.942 38 H 0.077 0.923 39 H -0.012 1.012 40 H 0.047 0.953 41 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.867 8.061 -2.380 22.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.168 4.168 3 C 0.053 3.947 4 H 0.079 0.921 5 C 0.054 3.946 6 H 0.089 0.911 7 N -0.343 5.343 8 C 0.288 3.712 9 O -0.455 6.455 10 C -0.001 4.001 11 N -0.057 5.057 12 N -0.154 5.154 13 C -0.210 4.210 14 C -0.210 4.210 15 N -0.151 5.151 16 C -0.181 4.181 17 C 0.054 3.946 18 N -0.338 5.338 19 C -0.359 4.359 20 H 0.104 0.896 21 C -0.258 4.258 22 N -0.600 5.600 23 Si 0.804 3.196 24 H -0.217 1.217 25 H -0.225 1.225 26 H -0.189 1.189 27 H 0.092 0.908 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.050 0.950 31 H 0.070 0.930 32 H 0.260 0.740 33 H 0.190 0.810 34 H 0.187 0.813 35 H 0.246 0.754 36 H 0.247 0.753 37 H 0.077 0.923 38 H 0.096 0.904 39 H 0.006 0.994 40 H 0.065 0.935 41 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -19.834 7.520 -1.845 21.292 hybrid contribution 0.937 -0.455 -0.294 1.082 sum -18.897 7.065 -2.139 20.287 Atomic orbital electron populations 1.21661 0.93587 1.02072 1.01880 1.21927 0.96701 0.97653 1.00488 1.21263 0.84321 0.94526 0.94545 0.92086 1.21615 0.83934 0.91756 0.97328 0.91076 1.45639 1.26683 1.51480 1.10510 1.21045 0.84746 0.80776 0.84677 1.90777 1.72326 1.56813 1.25601 1.22012 0.93647 1.04457 0.79959 1.47568 1.25932 1.14625 1.17566 1.74017 1.23955 1.12225 1.05196 1.25445 0.95963 1.01313 0.98289 1.25447 1.04307 0.96037 0.95165 1.73996 1.06865 1.21661 1.12619 1.23220 0.95766 0.98916 1.00163 1.21171 0.94152 0.92342 0.86939 1.44696 1.00623 1.68367 1.20111 1.19345 0.89537 1.34236 0.92786 0.89587 1.25692 0.98437 1.02256 0.99453 1.70145 1.09722 1.54305 1.25859 0.85121 0.77716 0.77613 0.79147 1.21706 1.22464 1.18864 0.90772 0.93431 0.92436 0.95049 0.93010 0.74023 0.80995 0.81337 0.75383 0.75285 0.92283 0.90417 0.99438 0.93459 0.94467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.38 9.57 71.98 0.69 -2.69 16 2 C -0.13 -4.48 5.41 30.60 0.17 -4.31 16 3 C 0.16 5.88 2.94 45.34 0.13 6.02 16 4 H 0.06 1.99 7.69 -2.39 -0.02 1.97 16 5 C 0.16 5.39 1.92 46.18 0.09 5.48 16 6 H 0.07 2.77 7.34 -2.38 -0.02 2.75 16 7 N -0.69 -16.14 4.94 -436.91 -2.16 -18.30 16 8 C 0.50 12.87 7.90 87.66 0.69 13.56 16 9 O -0.58 -21.49 16.16 -3.04 -0.05 -21.54 16 10 C 0.12 2.04 7.02 85.64 0.60 2.64 16 11 N -0.16 -3.76 3.44 -190.80 -0.66 -4.42 16 12 N -0.31 -7.83 12.05 -56.86 -0.69 -8.52 16 13 C -0.03 -0.51 12.20 85.11 1.04 0.52 16 14 C -0.03 -0.50 12.20 85.11 1.04 0.54 16 15 N -0.31 -7.60 12.05 -56.86 -0.69 -8.29 16 16 C -0.14 -5.47 6.77 31.99 0.22 -5.26 16 17 C 0.18 8.96 5.46 86.86 0.47 9.44 16 18 N -0.61 -29.94 3.13 -668.25 -2.09 -32.03 16 19 C -0.23 -12.27 9.77 84.03 0.82 -11.45 16 20 H 0.09 4.32 7.83 -2.91 -0.02 4.30 16 21 C -0.07 -3.64 5.47 84.86 0.46 -3.18 16 22 N -0.95 -56.99 10.47 21.65 0.23 -56.76 16 23 Si 0.98 44.89 29.55 68.60 2.03 46.92 16 24 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 25 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 26 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 27 H 0.07 1.50 8.14 -2.39 -0.02 1.49 16 28 H 0.05 1.22 7.38 -2.39 -0.02 1.20 16 29 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.03 1.24 8.08 -2.39 -0.02 1.22 16 31 H 0.05 1.94 7.91 -2.39 -0.02 1.92 16 32 H 0.42 6.46 8.31 -92.71 -0.77 5.69 16 33 H 0.17 1.55 8.14 -2.38 -0.02 1.53 16 34 H 0.17 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.23 2.34 8.06 -2.92 -0.02 2.32 16 36 H 0.23 2.24 8.06 -2.91 -0.02 2.22 16 37 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 38 H 0.08 2.78 8.14 -2.38 -0.02 2.76 16 39 H -0.01 -0.70 8.11 -2.38 -0.02 -0.72 16 40 H 0.05 2.65 6.73 -2.39 -0.02 2.63 16 41 H 0.25 14.44 8.31 -92.71 -0.77 13.66 16 Total: -1.00 -80.45 342.37 2.62 -77.83 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: 0.27 Total: 13.80 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: 6.42 Total: 11.31 kcal Atomic # 7 Polarization: -122.27 SS G_CDS: -6.05 Total: -128.32 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: -0.05 Total: -21.54 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -80.45 2.62 -77.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087587610.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.092 kcal (2) G-P(sol) polarization free energy of solvation -80.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds