Wall clock time and date at job start Tue Mar 31 2020 03:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47189 * 2 1 4 4 H 1.08994 * 109.87442 * 301.83812 * 3 2 1 5 5 C 1.54323 * 109.88296 * 180.82423 * 3 2 1 6 6 H 1.08997 * 110.72048 * 336.59950 * 5 3 2 7 7 N 1.46497 * 110.72162 * 99.87541 * 5 3 2 8 8 C 1.34780 * 119.99886 * 199.97841 * 7 5 3 9 9 O 1.21280 * 119.99974 * 359.97438 * 8 7 5 10 10 C 1.50699 * 120.00080 * 179.97438 * 8 7 5 11 11 C 1.50700 * 109.47251 * 179.97438 * 10 8 7 12 12 N 1.33246 * 125.52285 * 90.00156 * 11 10 8 13 13 C 1.30834 * 109.82301 * 180.02562 * 12 11 10 14 14 N 1.34432 * 108.08098 * 359.97438 * 13 12 11 15 15 H 0.96999 * 126.82008 * 180.02562 * 14 13 12 16 16 N 1.30707 * 125.52486 * 269.69277 * 11 10 8 17 17 C 1.55164 * 102.94277 * 218.23767 * 5 3 2 18 18 C 1.54906 * 101.61744 * 35.48030 * 17 5 3 19 19 N 1.47026 * 110.01257 * 62.93708 * 3 2 1 20 20 C 1.36933 * 125.64756 * 298.49146 * 19 3 2 21 21 H 1.08006 * 119.99800 * 340.66097 * 20 19 3 22 22 C 1.38810 * 120.00212 * 160.66591 * 20 19 3 23 23 N 1.31618 * 120.00374 * 159.92209 * 22 20 19 24 24 Si 1.86800 * 119.99809 * 339.92417 * 22 20 19 25 25 H 1.48498 * 109.47460 * 84.87354 * 24 22 20 26 26 H 1.48502 * 109.46869 * 204.87493 * 24 22 20 27 27 H 1.48497 * 109.47082 * 324.86978 * 24 22 20 28 28 H 1.09008 * 109.47169 * 172.09087 * 1 2 3 29 29 H 1.09004 * 109.47115 * 292.08577 * 1 2 3 30 30 H 1.08999 * 109.47375 * 52.08392 * 1 2 3 31 31 H 1.08998 * 109.46807 * 240.00184 * 2 1 3 32 32 H 1.08996 * 109.47497 * 120.00169 * 2 1 3 33 33 H 0.96994 * 120.00128 * 19.97287 * 7 5 3 34 34 H 1.09000 * 109.47179 * 300.00325 * 10 8 7 35 35 H 1.08998 * 109.46997 * 59.99615 * 10 8 7 36 36 H 1.08001 * 125.95868 * 180.02562 * 13 12 11 37 37 H 1.09001 * 111.00633 * 153.57352 * 17 5 3 38 38 H 1.09004 * 111.00204 * 277.38814 * 17 5 3 39 39 H 1.09003 * 110.36820 * 81.84684 * 18 17 5 40 40 H 1.09000 * 110.36966 * 204.17169 * 18 17 5 41 41 H 0.96996 * 120.00532 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6537 1.9720 -0.8708 5 6 3.5830 1.4536 -0.0209 6 1 3.9808 0.5188 0.3742 7 7 4.0813 1.6988 -1.3765 8 6 5.3440 1.3580 -1.7022 9 8 6.0678 0.8488 -0.8729 10 6 5.8564 1.6097 -3.0969 11 6 7.2855 1.1424 -3.1990 12 7 7.6765 -0.0807 -3.5549 13 6 8.9829 -0.1506 -3.5406 14 7 9.4609 1.0496 -3.1687 15 1 10.3931 1.2988 -3.0694 16 7 8.3424 1.8727 -2.9582 17 6 3.9347 2.6393 0.9161 18 6 2.8154 2.5372 1.9821 19 7 1.6151 2.1264 1.2302 20 6 0.3192 2.3452 1.6148 21 1 -0.4758 2.2983 0.8852 22 6 0.0274 2.6273 2.9422 23 7 -1.1076 3.2153 3.2559 24 14 1.2456 2.1726 4.2833 25 1 2.2557 3.2524 4.4215 26 1 0.5242 2.0020 5.5701 27 1 1.9252 0.9020 3.9247 28 1 -0.3634 -1.0180 -0.1414 29 1 -0.3633 0.3864 0.9523 30 1 -0.3634 0.6315 -0.8107 31 1 1.8932 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.5026 2.1063 -2.0396 34 1 5.2431 1.0634 -3.8135 35 1 5.8069 2.6764 -3.3152 36 1 9.5742 -1.0204 -3.7857 37 1 4.9175 2.5026 1.3672 38 1 3.8806 3.5883 0.3825 39 1 3.0704 1.7855 2.7291 40 1 2.6539 3.5051 2.4565 41 1 -1.3118 3.4121 4.1835 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087789018.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:42:45 Heat of formation + Delta-G solvation = 78.076350 kcal Electronic energy + Delta-G solvation = -23701.662398 eV Core-core repulsion = 20233.333011 eV Total energy + Delta-G solvation = -3468.329387 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.32700 -39.78904 -38.00531 -34.19374 -33.52161 -32.51680 -32.15682 -31.83620 -29.87825 -28.70207 -27.00731 -24.31318 -23.08377 -22.19104 -21.79599 -20.49384 -20.24799 -19.29586 -18.56455 -17.13778 -16.97683 -16.14199 -15.73659 -15.39580 -15.00061 -14.87288 -14.57770 -13.71548 -13.54433 -13.43814 -13.15509 -12.89341 -12.45438 -12.41822 -12.29309 -12.09464 -11.81870 -11.36933 -11.11698 -10.91461 -10.63709 -10.41378 -10.31087 -10.27792 -10.25736 -10.07515 -9.99505 -9.84849 -9.61940 -9.25838 -8.82137 -8.61785 -7.04443 -5.92963 -3.24396 1.37249 2.39289 2.57885 2.70370 3.34135 3.37244 3.51175 3.52720 3.86402 4.37770 4.56018 4.64660 4.78611 5.01717 5.15283 5.17516 5.23641 5.29443 5.32402 5.63619 5.82695 5.91230 5.94060 5.96991 6.11630 6.13313 6.20802 6.35217 6.43548 6.55724 6.61670 6.64566 6.76237 6.77570 6.79124 7.04711 7.35861 7.60903 7.72395 7.83313 8.30044 8.33049 8.83075 9.69106 10.17334 11.22543 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.030125 B = 0.003520 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.252455 B = 7952.031284 C = 8400.404751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C 0.160 3.840 4 H 0.047 0.953 5 C 0.136 3.864 6 H 0.094 0.906 7 N -0.714 5.714 8 C 0.522 3.478 9 O -0.533 6.533 10 C -0.051 4.051 11 C 0.252 3.748 12 N -0.534 5.534 13 C 0.261 3.739 14 N -0.485 5.485 15 H 0.441 0.559 16 N -0.304 5.304 17 C -0.139 4.139 18 C 0.108 3.892 19 N -0.600 5.600 20 C -0.233 4.233 21 H 0.099 0.901 22 C 0.021 3.979 23 N -0.911 5.911 24 Si 0.882 3.118 25 H -0.286 1.286 26 H -0.304 1.304 27 H -0.275 1.275 28 H 0.030 0.970 29 H 0.094 0.906 30 H 0.042 0.958 31 H 0.044 0.956 32 H 0.055 0.945 33 H 0.401 0.599 34 H 0.123 0.877 35 H 0.118 0.882 36 H 0.222 0.778 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.029 0.971 40 H 0.062 0.938 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.835 -4.545 -15.568 24.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C 0.053 3.947 4 H 0.065 0.935 5 C 0.031 3.969 6 H 0.112 0.888 7 N -0.365 5.365 8 C 0.306 3.694 9 O -0.409 6.409 10 C -0.093 4.093 11 C -0.032 4.032 12 N -0.262 5.262 13 C -0.038 4.038 14 N -0.203 5.203 15 H 0.286 0.714 16 N -0.133 5.133 17 C -0.179 4.179 18 C -0.017 4.017 19 N -0.326 5.326 20 C -0.359 4.359 21 H 0.117 0.883 22 C -0.178 4.178 23 N -0.555 5.555 24 Si 0.713 3.287 25 H -0.213 1.213 26 H -0.232 1.232 27 H -0.201 1.201 28 H 0.049 0.951 29 H 0.113 0.887 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.236 0.764 34 H 0.141 0.859 35 H 0.136 0.864 36 H 0.239 0.761 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.046 0.954 40 H 0.080 0.920 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 17.834 -4.364 -14.683 23.509 hybrid contribution 1.229 -0.198 0.646 1.402 sum 19.062 -4.562 -14.037 24.108 Atomic orbital electron populations 1.21971 0.95261 0.99167 1.04642 1.21911 0.97352 0.97234 1.00025 1.21149 0.89563 0.92404 0.91605 0.93507 1.22091 0.94782 0.99080 0.80935 0.88775 1.45934 1.13216 1.63343 1.14049 1.20098 0.82011 0.78301 0.89033 1.90728 1.56252 1.42789 1.51162 1.19919 0.88159 1.04227 0.97027 1.23308 0.95322 0.88006 0.96540 1.70365 1.10458 1.21056 1.24320 1.26064 0.91306 0.90989 0.95417 1.48078 1.09732 1.09488 1.52985 0.71360 1.77988 0.92810 1.17631 1.24896 1.23122 0.98784 0.98228 0.97756 1.22013 0.86713 0.98892 0.94079 1.44797 1.01806 1.64558 1.21448 1.18639 0.81801 1.42110 0.93388 0.88334 1.24986 0.96053 0.99828 0.96891 1.69797 1.24597 1.42778 1.18312 0.87021 0.80454 0.79332 0.81890 1.21334 1.23231 1.20061 0.95068 0.88730 0.93867 0.93699 0.92610 0.76391 0.85907 0.86396 0.76138 0.91372 0.90930 0.95356 0.91961 0.92725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 8.73 37.16 0.32 -2.55 16 2 C -0.13 -2.26 5.50 -26.73 -0.15 -2.41 16 3 C 0.16 2.97 3.02 -66.95 -0.20 2.77 16 4 H 0.05 0.83 7.68 -51.93 -0.40 0.44 16 5 C 0.14 2.28 2.76 -66.09 -0.18 2.10 16 6 H 0.09 1.73 7.41 -51.93 -0.39 1.35 16 7 N -0.71 -9.39 5.20 -52.03 -0.27 -9.66 16 8 C 0.52 7.33 7.82 -10.98 -0.09 7.24 16 9 O -0.53 -9.89 15.76 5.56 0.09 -9.80 16 10 C -0.05 -0.53 6.33 -29.04 -0.18 -0.71 16 11 C 0.25 3.20 6.63 -156.85 -1.04 2.16 16 12 N -0.53 -6.53 11.19 -11.97 -0.13 -6.66 16 13 C 0.26 2.11 13.13 -90.65 -1.19 0.92 16 14 N -0.48 -4.04 7.45 29.53 0.22 -3.82 16 15 H 0.44 1.89 8.96 -182.33 -1.63 0.25 16 16 N -0.30 -3.83 12.80 32.42 0.41 -3.41 16 17 C -0.14 -2.49 6.76 -24.58 -0.17 -2.66 16 18 C 0.11 2.36 4.69 -2.50 -0.01 2.35 16 19 N -0.60 -13.76 2.94 -162.54 -0.48 -14.24 16 20 C -0.23 -6.19 7.93 -15.06 -0.12 -6.31 16 21 H 0.10 2.75 6.94 -52.48 -0.36 2.39 16 22 C 0.02 0.59 5.45 -17.43 -0.10 0.49 16 23 N -0.91 -27.49 13.97 55.49 0.78 -26.71 16 24 Si 0.88 22.56 24.25 -169.99 -4.12 18.44 16 25 H -0.29 -7.13 6.52 56.52 0.37 -6.76 16 26 H -0.30 -7.94 7.11 56.52 0.40 -7.54 16 27 H -0.27 -6.97 6.48 56.52 0.37 -6.61 16 28 H 0.03 0.51 8.14 -51.92 -0.42 0.09 16 29 H 0.09 2.12 5.42 -51.93 -0.28 1.84 16 30 H 0.04 0.77 8.13 -51.93 -0.42 0.35 16 31 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.40 4.07 8.31 -40.82 -0.34 3.73 16 34 H 0.12 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.12 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.22 0.58 8.06 -52.49 -0.42 0.15 16 37 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.03 0.66 5.43 -51.93 -0.28 0.38 16 40 H 0.06 1.44 6.58 -51.93 -0.34 1.10 16 41 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 330.65 15.07 4.98 4.98 Total: -1.00 -36.85 330.65 -8.66 -45.51 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -7.03 Total: 1.98 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: -3.10 Total: 3.39 kcal Atomic # 7 Polarization: -65.03 SS G_CDS: 0.53 Total: -64.50 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.09 Total: -9.80 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -4.12 Total: 18.44 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -36.85 -8.66 -45.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087789018.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.587 kcal (2) G-P(sol) polarization free energy of solvation -36.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds