Wall clock time and date at job start Tue Mar 31 2020 03:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47189 * 2 1 4 4 H 1.08994 * 109.87442 * 301.83812 * 3 2 1 5 5 C 1.54323 * 109.88296 * 180.82423 * 3 2 1 6 6 H 1.08997 * 110.72048 * 336.59950 * 5 3 2 7 7 N 1.46497 * 110.72162 * 99.87541 * 5 3 2 8 8 C 1.34780 * 119.99886 * 199.97841 * 7 5 3 9 9 O 1.21280 * 119.99974 * 359.97438 * 8 7 5 10 10 C 1.50699 * 120.00080 * 179.97438 * 8 7 5 11 11 C 1.50700 * 109.47251 * 179.97438 * 10 8 7 12 12 N 1.33246 * 125.52285 * 90.00156 * 11 10 8 13 13 C 1.30834 * 109.82301 * 180.02562 * 12 11 10 14 14 N 1.34432 * 108.08098 * 359.97438 * 13 12 11 15 15 H 0.96999 * 126.82008 * 180.02562 * 14 13 12 16 16 N 1.30707 * 125.52486 * 269.69277 * 11 10 8 17 17 C 1.55164 * 102.94277 * 218.23767 * 5 3 2 18 18 C 1.54906 * 101.61744 * 35.48030 * 17 5 3 19 19 N 1.47026 * 110.01257 * 62.93708 * 3 2 1 20 20 C 1.36933 * 125.64756 * 298.49146 * 19 3 2 21 21 H 1.08006 * 119.99800 * 340.66097 * 20 19 3 22 22 C 1.38810 * 120.00212 * 160.66591 * 20 19 3 23 23 N 1.31618 * 120.00374 * 159.92209 * 22 20 19 24 24 Si 1.86800 * 119.99809 * 339.92417 * 22 20 19 25 25 H 1.48498 * 109.47460 * 84.87354 * 24 22 20 26 26 H 1.48502 * 109.46869 * 204.87493 * 24 22 20 27 27 H 1.48497 * 109.47082 * 324.86978 * 24 22 20 28 28 H 1.09008 * 109.47169 * 172.09087 * 1 2 3 29 29 H 1.09004 * 109.47115 * 292.08577 * 1 2 3 30 30 H 1.08999 * 109.47375 * 52.08392 * 1 2 3 31 31 H 1.08998 * 109.46807 * 240.00184 * 2 1 3 32 32 H 1.08996 * 109.47497 * 120.00169 * 2 1 3 33 33 H 0.96994 * 120.00128 * 19.97287 * 7 5 3 34 34 H 1.09000 * 109.47179 * 300.00325 * 10 8 7 35 35 H 1.08998 * 109.46997 * 59.99615 * 10 8 7 36 36 H 1.08001 * 125.95868 * 180.02562 * 13 12 11 37 37 H 1.09001 * 111.00633 * 153.57352 * 17 5 3 38 38 H 1.09004 * 111.00204 * 277.38814 * 17 5 3 39 39 H 1.09003 * 110.36820 * 81.84684 * 18 17 5 40 40 H 1.09000 * 110.36966 * 204.17169 * 18 17 5 41 41 H 0.96996 * 120.00532 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6537 1.9720 -0.8708 5 6 3.5830 1.4536 -0.0209 6 1 3.9808 0.5188 0.3742 7 7 4.0813 1.6988 -1.3765 8 6 5.3440 1.3580 -1.7022 9 8 6.0678 0.8488 -0.8729 10 6 5.8564 1.6097 -3.0969 11 6 7.2855 1.1424 -3.1990 12 7 7.6765 -0.0807 -3.5549 13 6 8.9829 -0.1506 -3.5406 14 7 9.4609 1.0496 -3.1687 15 1 10.3931 1.2988 -3.0694 16 7 8.3424 1.8727 -2.9582 17 6 3.9347 2.6393 0.9161 18 6 2.8154 2.5372 1.9821 19 7 1.6151 2.1264 1.2302 20 6 0.3192 2.3452 1.6148 21 1 -0.4758 2.2983 0.8852 22 6 0.0274 2.6273 2.9422 23 7 -1.1076 3.2153 3.2559 24 14 1.2456 2.1726 4.2833 25 1 2.2557 3.2524 4.4215 26 1 0.5242 2.0020 5.5701 27 1 1.9252 0.9020 3.9247 28 1 -0.3634 -1.0180 -0.1414 29 1 -0.3633 0.3864 0.9523 30 1 -0.3634 0.6315 -0.8107 31 1 1.8932 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.5026 2.1063 -2.0396 34 1 5.2431 1.0634 -3.8135 35 1 5.8069 2.6764 -3.3152 36 1 9.5742 -1.0204 -3.7857 37 1 4.9175 2.5026 1.3672 38 1 3.8806 3.5883 0.3825 39 1 3.0704 1.7855 2.7291 40 1 2.6539 3.5051 2.4565 41 1 -1.3118 3.4121 4.1835 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087789018.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:42:44 Heat of formation + Delta-G solvation = 49.948000 kcal Electronic energy + Delta-G solvation = -23702.882135 eV Core-core repulsion = 20233.333011 eV Total energy + Delta-G solvation = -3469.549124 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.04229 -41.04825 -39.48478 -35.64697 -34.34863 -34.14587 -33.84322 -32.67272 -31.33879 -29.88480 -28.50779 -26.08803 -23.91363 -23.79430 -22.95608 -21.73687 -21.46119 -20.64040 -19.24435 -18.88425 -18.22105 -17.57750 -16.94964 -16.53614 -16.26347 -16.17015 -15.59180 -15.32065 -14.91226 -14.81112 -14.58207 -14.30507 -14.04526 -13.82552 -13.59109 -13.14406 -13.05833 -13.00468 -12.96752 -12.58751 -12.36084 -11.96873 -11.92272 -11.66777 -11.54067 -11.27532 -11.18151 -11.05383 -10.94027 -10.71903 -10.58574 -10.02668 -9.00718 -8.10531 -5.36307 0.67398 1.30503 1.39910 1.45707 1.64397 1.71222 1.88449 2.33334 2.44699 3.10632 3.20113 3.32325 3.66257 3.70504 3.77200 3.91513 4.13866 4.20347 4.24161 4.42283 4.47475 4.50634 4.60549 4.62648 4.69457 4.83404 4.92420 5.01204 5.10699 5.15014 5.22294 5.26678 5.38007 5.39851 5.61288 5.69709 5.80989 6.18538 6.28561 6.58486 6.80363 7.12513 7.27460 7.59588 8.15038 9.08849 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.030125 B = 0.003520 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.252455 B = 7952.031284 C = 8400.404751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C 0.158 3.842 4 H 0.066 0.934 5 C 0.151 3.849 6 H 0.080 0.920 7 N -0.700 5.700 8 C 0.524 3.476 9 O -0.581 6.581 10 C -0.044 4.044 11 C 0.233 3.767 12 N -0.574 5.574 13 C 0.273 3.727 14 N -0.477 5.477 15 H 0.457 0.543 16 N -0.341 5.341 17 C -0.127 4.127 18 C 0.103 3.897 19 N -0.615 5.615 20 C -0.199 4.199 21 H 0.082 0.918 22 C -0.037 4.037 23 N -0.958 5.958 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.314 1.314 27 H -0.274 1.274 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.078 0.922 32 H 0.038 0.962 33 H 0.420 0.580 34 H 0.150 0.850 35 H 0.144 0.856 36 H 0.271 0.729 37 H 0.073 0.927 38 H 0.086 0.914 39 H 0.018 0.982 40 H 0.046 0.954 41 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.044 -5.349 -18.105 27.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.161 4.161 3 C 0.052 3.948 4 H 0.083 0.917 5 C 0.045 3.955 6 H 0.098 0.902 7 N -0.353 5.353 8 C 0.310 3.690 9 O -0.460 6.460 10 C -0.086 4.086 11 C -0.051 4.051 12 N -0.303 5.303 13 C -0.025 4.025 14 N -0.196 5.196 15 H 0.305 0.695 16 N -0.172 5.172 17 C -0.166 4.166 18 C -0.023 4.023 19 N -0.341 5.341 20 C -0.328 4.328 21 H 0.099 0.901 22 C -0.231 4.231 23 N -0.606 5.606 24 Si 0.761 3.239 25 H -0.205 1.205 26 H -0.243 1.243 27 H -0.200 1.200 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.097 0.903 32 H 0.057 0.943 33 H 0.258 0.742 34 H 0.168 0.832 35 H 0.162 0.838 36 H 0.287 0.713 37 H 0.091 0.909 38 H 0.105 0.895 39 H 0.035 0.965 40 H 0.064 0.936 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 20.100 -5.164 -17.278 27.004 hybrid contribution 0.637 -0.021 1.296 1.444 sum 20.737 -5.185 -15.982 26.690 Atomic orbital electron populations 1.21846 0.95875 1.00366 1.02412 1.21865 0.96636 0.96799 1.00802 1.21331 0.90934 0.92586 0.89993 0.91676 1.21682 0.93214 0.97962 0.82677 0.90172 1.45706 1.13486 1.63184 1.12879 1.20703 0.81385 0.76876 0.90016 1.90712 1.57466 1.44919 1.52887 1.20010 0.87602 1.06283 0.94721 1.23692 0.96133 0.88420 0.96822 1.70354 1.12587 1.21339 1.26059 1.27006 0.90717 0.91788 0.92994 1.48028 1.09926 1.09300 1.52374 0.69455 1.77871 0.93879 1.19365 1.26042 1.23017 0.97312 0.99470 0.96825 1.22018 0.87636 0.97527 0.95073 1.44914 1.00967 1.65451 1.22755 1.18602 0.83065 1.38491 0.92614 0.90066 1.25453 0.97412 1.01427 0.98775 1.69896 1.26718 1.45816 1.18210 0.86225 0.78863 0.79189 0.79584 1.20465 1.24335 1.20032 0.92972 0.92977 0.93140 0.90333 0.94326 0.74223 0.83198 0.83785 0.71318 0.90875 0.89506 0.96490 0.93620 0.93220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.34 8.73 71.98 0.63 -4.71 16 2 C -0.12 -4.12 5.50 30.59 0.17 -3.95 16 3 C 0.16 5.51 3.02 45.34 0.14 5.64 16 4 H 0.07 2.09 7.68 -2.39 -0.02 2.07 16 5 C 0.15 4.71 2.76 46.18 0.13 4.83 16 6 H 0.08 2.81 7.41 -2.39 -0.02 2.79 16 7 N -0.70 -16.14 5.20 -436.91 -2.27 -18.41 16 8 C 0.52 13.35 7.82 87.66 0.69 14.03 16 9 O -0.58 -20.64 15.76 -3.03 -0.05 -20.69 16 10 C -0.04 -0.79 6.33 29.10 0.18 -0.60 16 11 C 0.23 5.44 6.63 138.63 0.92 6.36 16 12 N -0.57 -12.74 11.19 -191.80 -2.15 -14.89 16 13 C 0.27 3.63 13.13 180.36 2.37 6.00 16 14 N -0.48 -6.87 7.45 -60.49 -0.45 -7.33 16 15 H 0.46 2.88 8.96 -213.09 -1.91 0.97 16 16 N -0.34 -8.00 12.80 -51.33 -0.66 -8.66 16 17 C -0.13 -4.29 6.76 31.99 0.22 -4.08 16 18 C 0.10 4.39 4.69 86.84 0.41 4.80 16 19 N -0.61 -27.77 2.94 -668.15 -1.97 -29.74 16 20 C -0.20 -10.70 7.93 84.03 0.67 -10.04 16 21 H 0.08 4.61 6.94 -2.91 -0.02 4.59 16 22 C -0.04 -2.14 5.45 84.86 0.46 -1.68 16 23 N -0.96 -59.67 13.97 21.65 0.30 -59.37 16 24 Si 0.93 47.71 24.25 68.60 1.66 49.38 16 25 H -0.28 -13.68 6.52 99.48 0.65 -13.04 16 26 H -0.31 -16.49 7.11 99.48 0.71 -15.78 16 27 H -0.27 -13.83 6.48 99.48 0.64 -13.19 16 28 H 0.05 1.63 8.14 -2.38 -0.02 1.62 16 29 H 0.05 2.34 5.42 -2.38 -0.01 2.32 16 30 H 0.05 1.72 8.13 -2.39 -0.02 1.70 16 31 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.42 6.76 8.31 -92.71 -0.77 5.99 16 34 H 0.15 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.14 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.27 0.29 8.06 -2.91 -0.02 0.26 16 37 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 38 H 0.09 2.70 8.14 -2.38 -0.02 2.68 16 39 H 0.02 0.79 5.43 -2.39 -0.01 0.78 16 40 H 0.05 2.10 6.58 -2.39 -0.02 2.08 16 41 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -82.63 330.65 -0.33 -82.97 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -1.73 Total: 10.12 kcal Atomic # 6 Polarization: 9.64 SS G_CDS: 6.97 Total: 16.61 kcal Atomic # 7 Polarization: -131.19 SS G_CDS: -7.19 Total: -138.39 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -0.05 Total: -20.69 kcal Atomic # 14 Polarization: 47.71 SS G_CDS: 1.66 Total: 49.38 kcal Total: -82.63 -0.33 -82.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087789018.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.913 kcal (2) G-P(sol) polarization free energy of solvation -82.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds