Wall clock time and date at job start Tue Mar 31 2020 03:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47024 * 2 1 4 4 H 1.08995 * 109.87468 * 55.82534 * 3 2 1 5 5 C 1.54324 * 109.88371 * 294.80500 * 3 2 1 6 6 H 1.09000 * 110.71878 * 336.60648 * 5 3 2 7 7 N 1.46504 * 110.71546 * 99.87108 * 5 3 2 8 8 C 1.34776 * 119.99705 * 199.97643 * 7 5 3 9 9 O 1.21280 * 120.00325 * 0.02562 * 8 7 5 10 10 C 1.50701 * 119.99746 * 180.02562 * 8 7 5 11 11 N 1.46502 * 109.46952 * 180.02562 * 10 8 7 12 12 C 1.34434 * 126.82497 * 124.71126 * 11 10 8 13 13 N 1.30828 * 108.07969 * 179.89307 * 12 11 10 14 14 C 1.33249 * 109.82590 * 0.37523 * 13 12 11 15 15 N 1.30709 * 108.94802 * 359.77153 * 14 13 12 16 16 C 1.55157 * 102.94397 * 218.23492 * 5 3 2 17 17 C 1.54904 * 101.61469 * 35.48487 * 16 5 3 18 18 N 1.47022 * 110.01065 * 176.92248 * 3 2 1 19 19 C 1.36937 * 125.65181 * 298.48613 * 18 3 2 20 20 H 1.08004 * 119.99468 * 345.38905 * 19 18 3 21 21 C 1.38809 * 120.00135 * 165.38999 * 19 18 3 22 22 N 1.31616 * 120.00180 * 0.02562 * 21 19 18 23 23 Si 1.86808 * 119.99829 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46987 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47491 * 119.99914 * 23 21 19 26 26 H 1.48506 * 109.46722 * 239.99920 * 23 21 19 27 27 H 1.08999 * 109.47376 * 65.56758 * 1 2 3 28 28 H 1.09001 * 109.47282 * 185.56739 * 1 2 3 29 29 H 1.09003 * 109.47093 * 305.56534 * 1 2 3 30 30 H 1.09004 * 109.47077 * 240.00385 * 2 1 3 31 31 H 1.08998 * 109.47630 * 120.00222 * 2 1 3 32 32 H 0.96998 * 120.00290 * 19.98032 * 7 5 3 33 33 H 1.09002 * 109.47009 * 299.99337 * 10 8 7 34 34 H 1.08991 * 109.47235 * 59.99958 * 10 8 7 35 35 H 1.07994 * 125.95801 * 0.02984 * 12 11 10 36 36 H 1.08000 * 125.52307 * 179.79909 * 14 13 12 37 37 H 1.09000 * 110.99967 * 153.57804 * 16 5 3 38 38 H 1.08994 * 111.00162 * 277.38987 * 16 5 3 39 39 H 1.09004 * 110.36798 * 81.84686 * 17 16 5 40 40 H 1.08995 * 110.36636 * 204.16414 * 17 16 5 41 41 H 0.97000 * 120.00058 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6206 1.9838 0.8480 5 6 1.6409 2.1403 -1.3174 6 1 1.4684 1.4071 -2.1052 7 7 0.4567 2.9802 -1.1208 8 6 -0.2904 3.3501 -2.1798 9 8 0.0173 2.9872 -3.2954 10 6 -1.5082 4.2145 -1.9777 11 7 -2.1429 4.4743 -3.2723 12 6 -3.4212 4.2272 -3.6071 13 7 -3.5954 4.6014 -4.8485 14 6 -2.4542 5.0827 -5.3399 15 7 -1.5351 5.0256 -4.4122 16 6 2.8840 3.0109 -1.6399 17 6 4.0371 2.1053 -1.1402 18 7 3.5082 1.4571 0.0742 19 6 4.2606 0.9519 1.1008 20 1 3.7939 0.7115 2.0447 21 6 5.6228 0.7487 0.9283 22 7 6.1916 1.0422 -0.2218 23 14 6.6490 0.0589 2.3286 24 1 5.7784 -0.1853 3.5066 25 1 7.2744 -1.2185 1.9015 26 1 7.7100 1.0326 2.6911 27 1 -0.3634 0.4251 -0.9356 28 1 -0.3634 -1.0228 0.0997 29 1 -0.3633 0.5977 0.8360 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 0.2104 3.2702 -0.2286 33 1 -2.2137 3.7013 -1.3242 34 1 -1.2117 5.1591 -1.5220 35 1 -4.1736 3.7970 -2.9628 36 1 -2.3118 5.4594 -6.3420 37 1 2.9662 3.1926 -2.7115 38 1 2.8572 3.9501 -1.0874 39 1 4.2846 1.3563 -1.8925 40 1 4.9140 2.7061 -0.8992 41 1 7.1434 0.8999 -0.3425 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087820074.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:42:47 Heat of formation + Delta-G solvation = 85.130352 kcal Electronic energy + Delta-G solvation = -23780.670810 eV Core-core repulsion = 20312.647308 eV Total energy + Delta-G solvation = -3468.023502 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.18253 -39.82988 -37.81478 -34.16488 -34.13531 -32.84382 -31.79302 -31.30744 -29.34617 -28.21023 -26.42186 -24.44949 -22.76273 -22.10964 -22.01085 -20.69828 -20.24137 -19.62010 -17.59727 -17.28615 -16.87133 -15.94241 -15.82549 -15.09051 -14.92654 -14.72208 -14.20967 -14.06667 -13.92668 -13.73105 -13.26607 -13.00757 -12.77971 -12.11550 -12.01003 -11.94411 -11.71803 -11.21625 -10.95382 -10.89694 -10.68150 -10.53742 -10.44243 -10.23086 -10.14806 -10.08769 -9.89092 -9.82115 -9.71879 -9.52132 -8.77390 -8.63349 -6.86730 -5.80448 -3.17458 1.48282 2.02229 2.52832 2.86710 3.13018 3.34907 3.40750 3.43137 4.14266 4.22552 4.41723 4.54692 4.68360 4.73259 5.10101 5.19621 5.28713 5.44103 5.48527 5.65063 5.72827 5.76802 5.96564 6.04645 6.15553 6.18442 6.30563 6.32125 6.38532 6.48400 6.55332 6.62883 6.65304 6.86733 7.05786 7.45545 7.50972 7.58003 7.74094 7.94135 8.18486 8.22779 9.12442 9.73568 10.40893 11.31420 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.035063 B = 0.003333 C = 0.003152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.367521 B = 8399.758531 C = 8881.376131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.162 3.838 4 H 0.035 0.965 5 C 0.141 3.859 6 H 0.092 0.908 7 N -0.711 5.711 8 C 0.498 3.502 9 O -0.512 6.512 10 C 0.109 3.891 11 N -0.367 5.367 12 C 0.252 3.748 13 N -0.547 5.547 14 C 0.189 3.811 15 N -0.286 5.286 16 C -0.156 4.156 17 C 0.174 3.826 18 N -0.594 5.594 19 C -0.230 4.230 20 H 0.076 0.924 21 C -0.003 4.003 22 N -0.915 5.915 23 Si 0.910 3.090 24 H -0.279 1.279 25 H -0.290 1.290 26 H -0.290 1.290 27 H 0.046 0.954 28 H 0.045 0.955 29 H 0.047 0.953 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.398 0.602 33 H 0.129 0.871 34 H 0.119 0.881 35 H 0.218 0.782 36 H 0.216 0.784 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.028 0.972 40 H 0.074 0.926 41 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.997 6.280 -1.033 19.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.173 4.173 3 C 0.054 3.946 4 H 0.053 0.947 5 C 0.036 3.964 6 H 0.110 0.890 7 N -0.363 5.363 8 C 0.280 3.720 9 O -0.386 6.386 10 C -0.017 4.017 11 N -0.159 5.159 12 C -0.045 4.045 13 N -0.274 5.274 14 C -0.114 4.114 15 N -0.112 5.112 16 C -0.195 4.195 17 C 0.049 3.951 18 N -0.319 5.319 19 C -0.358 4.358 20 H 0.094 0.906 21 C -0.200 4.200 22 N -0.561 5.561 23 Si 0.740 3.260 24 H -0.204 1.204 25 H -0.217 1.217 26 H -0.217 1.217 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.233 0.767 33 H 0.147 0.853 34 H 0.136 0.864 35 H 0.235 0.765 36 H 0.232 0.768 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.046 0.954 40 H 0.092 0.908 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -17.038 6.169 -2.028 18.234 hybrid contribution 0.440 -0.468 1.373 1.516 sum -16.598 5.701 -0.655 17.562 Atomic orbital electron populations 1.21767 0.97323 1.00590 1.00705 1.22028 0.93534 0.99223 1.02506 1.21057 0.87233 0.93291 0.93007 0.94738 1.22117 0.83151 0.92283 0.98801 0.89039 1.45998 1.28345 1.52739 1.09184 1.20293 0.84469 0.81553 0.85668 1.90807 1.70351 1.53999 1.23437 1.21630 0.96062 1.02275 0.81774 1.49990 1.08504 1.46524 1.10862 1.26045 0.86922 0.97719 0.93794 1.70515 1.28035 1.20695 1.08125 1.26019 0.86013 0.98952 1.00405 1.78234 1.20906 1.18828 0.93222 1.23414 0.96652 0.98982 1.00485 1.21444 0.93114 0.92909 0.87647 1.44465 0.98318 1.68261 1.20808 1.18974 0.89863 1.36097 0.90880 0.90636 1.24922 0.97251 1.00823 0.96984 1.69937 1.10602 1.52655 1.22914 0.86085 0.80258 0.78519 0.81111 1.20428 1.21660 1.21720 0.93481 0.93635 0.93414 0.92368 0.91620 0.76738 0.85281 0.86361 0.76547 0.76792 0.91856 0.92036 0.95401 0.90756 0.93609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.57 37.16 0.36 -1.59 16 2 C -0.13 -2.33 5.42 -26.73 -0.14 -2.48 16 3 C 0.16 3.02 2.93 -66.95 -0.20 2.82 16 4 H 0.04 0.61 7.69 -51.93 -0.40 0.21 16 5 C 0.14 2.38 1.93 -66.09 -0.13 2.25 16 6 H 0.09 1.73 7.35 -51.93 -0.38 1.35 16 7 N -0.71 -8.76 4.93 -52.03 -0.26 -9.02 16 8 C 0.50 6.39 7.86 -10.99 -0.09 6.31 16 9 O -0.51 -9.28 15.47 5.56 0.09 -9.19 16 10 C 0.11 0.87 7.03 -5.19 -0.04 0.83 16 11 N -0.37 -4.05 3.41 -63.82 -0.22 -4.27 16 12 C 0.25 2.35 12.63 -90.65 -1.14 1.21 16 13 N -0.55 -6.52 11.19 -15.83 -0.18 -6.70 16 14 C 0.19 2.30 13.03 -91.81 -1.20 1.10 16 15 N -0.29 -4.04 11.81 29.29 0.35 -3.69 16 16 C -0.16 -2.97 6.76 -24.59 -0.17 -3.14 16 17 C 0.17 4.12 5.41 -2.51 -0.01 4.11 16 18 N -0.59 -14.20 3.13 -162.54 -0.51 -14.71 16 19 C -0.23 -6.06 9.75 -15.06 -0.15 -6.20 16 20 H 0.08 1.93 7.83 -52.48 -0.41 1.52 16 21 C 0.00 -0.07 5.47 -17.43 -0.10 -0.16 16 22 N -0.91 -26.19 10.57 55.49 0.59 -25.61 16 23 Si 0.91 21.42 29.55 -169.99 -5.02 16.39 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 27 H 0.05 0.62 7.40 -51.93 -0.38 0.24 16 28 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 1.12 8.07 -51.93 -0.42 0.70 16 31 H 0.07 1.24 7.91 -51.93 -0.41 0.83 16 32 H 0.40 3.65 8.31 -40.82 -0.34 3.31 16 33 H 0.13 0.43 8.09 -51.93 -0.42 0.01 16 34 H 0.12 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.22 0.89 8.06 -52.49 -0.42 0.47 16 36 H 0.22 1.86 8.06 -52.49 -0.42 1.43 16 37 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 39 H 0.03 0.73 8.06 -51.93 -0.42 0.31 16 40 H 0.07 1.96 6.93 -51.93 -0.36 1.60 16 41 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 341.95 15.07 5.15 5.15 Total: -1.00 -35.72 341.95 -9.05 -44.77 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -6.04 Total: 1.81 kcal Atomic # 6 Polarization: 8.06 SS G_CDS: -3.00 Total: 5.06 kcal Atomic # 7 Polarization: -63.77 SS G_CDS: -0.23 Total: -63.99 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: 0.09 Total: -9.19 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -35.72 -9.05 -44.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087820074.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.902 kcal (2) G-P(sol) polarization free energy of solvation -35.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds