Wall clock time and date at job start Tue Mar 31 2020 03:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 119.99666 * 2 1 4 4 H 1.48501 * 109.47161 * 240.00115 * 3 2 1 5 5 H 1.48499 * 109.47201 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47216 * 119.99532 * 3 2 1 7 7 C 1.38803 * 120.00413 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00285 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00055 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00012 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.50136 * 35.04728 * 10 9 7 12 12 C 1.52878 * 109.48115 * 155.08812 * 10 9 7 13 13 C 1.53958 * 109.72867 * 192.87260 * 12 10 9 14 14 C 1.52440 * 110.73511 * 44.36373 * 13 12 10 15 15 C 1.53795 * 109.40652 * 246.27466 * 14 13 12 16 16 C 1.51798 * 109.05699 * 77.78850 * 15 14 13 17 17 N 1.46967 * 109.39705 * 287.19155 * 16 15 14 18 18 C 1.34774 * 120.36358 * 291.89666 * 17 16 15 19 19 O 1.21615 * 119.99752 * 182.58378 * 18 17 16 20 20 C 1.47236 * 120.00248 * 2.58945 * 18 17 16 21 21 C 1.37001 * 127.18748 * 172.85704 * 20 18 17 22 22 N 1.33319 * 106.37158 * 179.97438 * 21 20 18 23 23 N 1.28516 * 109.43973 * 359.76749 * 22 21 20 24 24 N 1.28717 * 110.63698 * 0.39111 * 23 22 21 25 25 H 0.96997 * 126.03821 * 179.88086 * 24 23 22 26 26 C 1.45339 * 119.26898 * 111.63073 * 17 16 15 27 27 H 0.96999 * 120.00507 * 0.02562 * 1 2 3 28 28 H 0.97002 * 119.99592 * 0.02562 * 9 7 2 29 29 H 1.09001 * 109.43478 * 312.94781 * 12 10 9 30 30 H 1.09002 * 109.42846 * 72.79595 * 12 10 9 31 31 H 1.09000 * 109.22745 * 164.68934 * 13 12 10 32 32 H 1.09007 * 109.22162 * 284.08296 * 13 12 10 33 33 H 1.09007 * 109.47998 * 6.25386 * 14 13 12 34 34 H 1.08996 * 109.48124 * 126.27810 * 14 13 12 35 35 H 1.09003 * 109.52738 * 197.73648 * 15 14 13 36 36 H 1.09002 * 109.52178 * 317.86479 * 15 14 13 37 37 H 1.09003 * 109.17186 * 167.34330 * 16 15 14 38 38 H 1.08999 * 109.60436 * 47.29832 * 16 15 14 39 39 H 1.07997 * 126.81684 * 359.97438 * 21 20 18 40 40 H 1.09000 * 109.67725 * 76.66154 * 26 17 16 41 41 H 1.08995 * 109.67467 * 197.16154 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0583 -3.6567 0.0005 11 1 2.9687 -3.5511 0.5906 12 6 1.1813 -4.7519 0.6076 13 6 2.0370 -5.9959 0.9084 14 6 3.3529 -5.5992 1.5678 15 6 4.5186 -5.9261 0.6193 16 6 4.5957 -4.8588 -0.4574 17 7 3.4804 -5.0335 -1.3985 18 6 3.4356 -6.1088 -2.2097 19 8 2.5347 -6.2231 -3.0186 20 6 4.4773 -7.1452 -2.1166 21 6 4.5049 -8.3521 -2.7644 22 7 5.6291 -8.9582 -2.3822 23 7 6.2670 -8.1997 -1.5640 24 7 5.6220 -7.1038 -1.3644 25 1 5.8993 -6.3755 -0.7869 26 6 2.4234 -4.0369 -1.4405 27 1 -0.4851 0.8400 -0.0004 28 1 0.3557 -2.3880 -0.0002 29 1 0.7340 -4.3874 1.5324 30 1 0.3921 -5.0162 -0.0963 31 1 1.4859 -6.6577 1.5765 32 1 2.2471 -6.5208 -0.0236 33 1 3.3455 -4.5300 1.7797 34 1 3.4747 -6.1535 2.4984 35 1 5.4518 -5.9457 1.1823 36 1 4.3510 -6.8993 0.1580 37 1 5.5413 -4.9561 -0.9908 38 1 4.5345 -3.8718 0.0009 39 1 3.7631 -8.7363 -3.4489 40 1 2.7725 -3.1539 -1.9758 41 1 1.5495 -4.4498 -1.9443 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088339479.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:13 Heat of formation + Delta-G solvation = 109.761875 kcal Electronic energy + Delta-G solvation = -24946.707765 eV Core-core repulsion = 21479.752366 eV Total energy + Delta-G solvation = -3466.955399 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.71496 -40.47910 -37.94923 -35.61154 -34.12291 -33.61486 -32.37082 -31.42876 -30.20527 -27.60893 -26.61156 -24.80484 -23.66540 -23.23952 -22.45878 -21.64158 -20.77910 -19.20752 -18.21697 -17.36613 -16.90067 -16.52259 -16.46409 -15.88954 -14.93480 -14.66943 -14.54125 -14.34218 -14.06296 -13.72033 -13.45951 -13.20681 -12.79840 -12.58664 -12.35410 -11.90070 -11.73390 -11.68087 -11.40197 -11.18458 -11.02252 -10.91959 -10.71784 -10.63977 -10.52787 -10.32680 -10.20883 -9.93425 -9.78393 -9.67588 -9.09959 -8.57359 -7.14094 -5.91100 -3.22098 0.74088 2.11898 2.27322 2.80536 2.99141 3.33654 3.38351 3.40334 3.95530 4.23605 4.36319 4.45987 4.53438 4.67451 4.79476 4.95649 5.06182 5.13575 5.15260 5.29416 5.36996 5.43765 5.56853 5.66216 5.75362 5.78068 5.80900 5.93740 6.10200 6.14439 6.25297 6.31214 6.34821 6.40158 6.55696 6.64655 6.85145 7.23338 7.52106 7.92163 8.08318 8.26226 9.37893 9.92713 10.27110 11.30664 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.024438 B = 0.004321 C = 0.004259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.476107 B = 6478.325530 C = 6572.533115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.006 4.006 3 Si 0.907 3.093 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.251 4.251 8 H 0.069 0.931 9 N -0.717 5.717 10 C 0.159 3.841 11 H 0.064 0.936 12 C -0.125 4.125 13 C -0.115 4.115 14 C -0.120 4.120 15 C -0.173 4.173 16 C 0.085 3.915 17 N -0.587 5.587 18 C 0.588 3.412 19 O -0.516 6.516 20 C -0.058 4.058 21 C 0.026 3.974 22 N -0.273 5.273 23 N -0.059 5.059 24 N -0.379 5.379 25 H 0.454 0.546 26 C 0.087 3.913 27 H 0.258 0.742 28 H 0.387 0.613 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.085 0.915 34 H 0.062 0.938 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.060 0.940 38 H 0.118 0.882 39 H 0.203 0.797 40 H 0.075 0.925 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.570 -13.091 1.230 16.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.203 4.203 3 Si 0.737 3.263 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.382 4.382 8 H 0.087 0.913 9 N -0.358 5.358 10 C 0.048 3.952 11 H 0.082 0.918 12 C -0.163 4.163 13 C -0.154 4.154 14 C -0.158 4.158 15 C -0.212 4.212 16 C -0.039 4.039 17 N -0.319 5.319 18 C 0.372 3.628 19 O -0.390 6.390 20 C -0.193 4.193 21 C -0.133 4.133 22 N -0.138 5.138 23 N -0.041 5.041 24 N -0.116 5.116 25 H 0.312 0.688 26 C -0.037 4.037 27 H 0.068 0.932 28 H 0.221 0.779 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.103 0.897 34 H 0.081 0.919 35 H 0.101 0.899 36 H 0.092 0.908 37 H 0.078 0.922 38 H 0.136 0.864 39 H 0.220 0.780 40 H 0.093 0.907 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 10.363 -13.826 1.086 17.312 hybrid contribution -0.539 2.055 0.040 2.125 sum 9.824 -11.770 1.126 15.373 Atomic orbital electron populations 1.69644 1.05167 1.26095 1.56477 1.24757 0.95478 0.97774 1.02279 0.86294 0.78616 0.83533 0.77846 1.21189 1.21582 1.21175 1.19121 0.90837 0.83985 1.44218 0.91258 1.42404 1.05969 0.99403 1.87987 1.20897 0.95679 0.86717 0.91925 0.91820 1.22033 0.98208 0.94710 1.01334 1.21660 0.95652 0.97980 1.00076 1.21758 0.93455 1.03211 0.97347 1.22651 1.01132 0.99156 0.98242 1.21910 0.88254 1.02920 0.90776 1.47807 1.24461 1.22896 1.36773 1.16794 0.83925 0.80460 0.81588 1.90861 1.34999 1.76874 1.36311 1.22504 0.92958 1.01198 1.02624 1.23900 0.97429 0.90861 1.01150 1.74962 1.05579 1.24013 1.09284 1.78156 1.19478 0.92187 1.14287 1.47102 1.14906 1.17135 1.32500 0.68765 1.22852 0.89252 0.89509 1.02106 0.93213 0.77944 0.91421 0.92117 0.92568 0.92456 0.89670 0.91908 0.89935 0.90811 0.92195 0.86379 0.78049 0.90724 0.89571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.53 13.06 55.49 0.72 -25.81 16 2 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 3 Si 0.91 21.05 29.55 -169.99 -5.02 16.03 16 4 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.29 -6.49 7.11 56.52 0.40 -6.08 16 7 C -0.25 -6.31 9.88 -15.06 -0.15 -6.46 16 8 H 0.07 1.65 7.83 -52.49 -0.41 1.24 16 9 N -0.72 -16.20 5.12 -53.27 -0.27 -16.48 16 10 C 0.16 2.70 2.29 -67.77 -0.16 2.55 16 11 H 0.06 1.03 3.29 -51.93 -0.17 0.85 16 12 C -0.12 -1.89 5.22 -26.29 -0.14 -2.03 16 13 C -0.12 -1.43 5.40 -26.52 -0.14 -1.57 16 14 C -0.12 -1.25 5.49 -26.60 -0.15 -1.40 16 15 C -0.17 -1.49 3.88 -26.93 -0.10 -1.59 16 16 C 0.09 0.83 4.81 -4.40 -0.02 0.81 16 17 N -0.59 -7.70 1.69 -176.02 -0.30 -8.00 16 18 C 0.59 8.27 6.28 -12.61 -0.08 8.19 16 19 O -0.52 -8.94 16.38 5.26 0.09 -8.85 16 20 C -0.06 -0.70 5.83 -82.33 -0.48 -1.18 16 21 C 0.03 0.31 11.87 -17.35 -0.21 0.10 16 22 N -0.27 -3.54 12.35 30.47 0.38 -3.16 16 23 N -0.06 -0.71 13.35 60.35 0.81 0.10 16 24 N -0.38 -3.83 4.90 33.31 0.16 -3.67 16 25 H 0.45 3.47 3.78 -190.33 -0.72 2.75 16 26 C 0.09 1.44 5.59 -4.44 -0.02 1.41 16 27 H 0.26 7.21 8.31 -40.82 -0.34 6.88 16 28 H 0.39 9.55 7.80 -40.82 -0.32 9.23 16 29 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.06 0.96 7.87 -51.93 -0.41 0.55 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.75 5.37 -51.93 -0.28 0.47 16 33 H 0.08 0.99 5.47 -51.93 -0.28 0.71 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.49 8.06 -51.93 -0.42 0.07 16 36 H 0.07 0.71 4.64 -51.93 -0.24 0.46 16 37 H 0.06 0.45 5.94 -51.93 -0.31 0.14 16 38 H 0.12 1.22 6.06 -51.93 -0.31 0.91 16 39 H 0.20 1.98 8.06 -52.49 -0.42 1.55 16 40 H 0.07 1.38 8.09 -51.93 -0.42 0.96 16 41 H 0.09 1.56 6.82 -51.93 -0.35 1.20 16 LS Contribution 311.59 15.07 4.70 4.70 Total: -1.00 -30.27 311.59 -5.96 -36.24 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -5.47 Total: 10.33 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: -1.74 Total: -1.42 kcal Atomic # 7 Polarization: -58.52 SS G_CDS: 1.50 Total: -57.02 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: 0.09 Total: -8.85 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.27 -5.96 -36.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088339479.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.997 kcal (2) G-P(sol) polarization free energy of solvation -30.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds