Wall clock time and date at job start Tue Mar 31 2020 03:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86794 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47291 * 239.99817 * 3 2 1 5 5 H 1.48504 * 109.47109 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47188 * 119.99572 * 3 2 1 7 7 C 1.38820 * 119.99537 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99356 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00138 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99692 * 179.97438 * 9 7 2 11 11 H 1.08994 * 109.67238 * 325.49669 * 10 9 7 12 12 C 1.53491 * 109.67284 * 205.00039 * 10 9 7 13 13 C 1.52449 * 109.15092 * 126.01097 * 12 10 9 14 14 C 1.53122 * 109.67677 * 43.93537 * 13 12 10 15 15 C 1.53432 * 109.32864 * 77.06220 * 14 13 12 16 16 C 1.53416 * 108.49356 * 287.67645 * 15 14 13 17 17 N 1.46070 * 110.11050 * 316.34091 * 16 15 14 18 18 C 1.34781 * 120.16785 * 293.08715 * 17 16 15 19 19 O 1.21615 * 119.99785 * 174.26693 * 18 17 16 20 20 C 1.47230 * 119.99860 * 354.26373 * 18 17 16 21 21 C 1.37008 * 127.18624 * 179.18527 * 20 18 17 22 22 N 1.33319 * 106.37104 * 179.90756 * 21 20 18 23 23 N 1.28506 * 109.43926 * 0.36834 * 22 21 20 24 24 N 1.28705 * 110.64157 * 359.76793 * 23 22 21 25 25 H 0.97009 * 126.04101 * 180.02562 * 24 23 22 26 26 C 1.47129 * 119.65850 * 113.05712 * 17 16 15 27 27 H 0.97000 * 119.99410 * 0.02562 * 1 2 3 28 28 H 0.96998 * 120.00156 * 359.97438 * 9 7 2 29 29 H 1.08997 * 109.52301 * 245.91536 * 12 10 9 30 30 H 1.09000 * 109.52307 * 6.10769 * 12 10 9 31 31 H 1.09004 * 109.43736 * 163.99773 * 13 12 10 32 32 H 1.08995 * 109.43837 * 283.87294 * 13 12 10 33 33 H 1.08995 * 109.49884 * 317.10186 * 14 13 12 34 34 H 1.08999 * 109.52140 * 197.02871 * 14 13 12 35 35 H 1.08998 * 109.63553 * 167.97301 * 15 14 13 36 36 H 1.09005 * 109.62993 * 47.37408 * 15 14 13 37 37 H 1.09000 * 109.36434 * 196.14478 * 16 15 14 38 38 H 1.09003 * 109.36716 * 76.54099 * 16 15 14 39 39 H 1.08001 * 126.81326 * 0.02562 * 21 20 18 40 40 H 1.08998 * 109.84526 * 168.33706 * 26 17 16 41 41 H 1.08999 * 109.90188 * 47.38783 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0102 -1.2023 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9739 -3.5517 -0.5808 12 6 1.1820 -4.7593 -0.6103 13 6 1.9452 -5.4336 -1.7446 14 6 3.3908 -5.6925 -1.3109 15 6 3.4310 -6.9108 -0.3792 16 6 2.8263 -6.5099 0.9726 17 7 3.3272 -5.1989 1.3777 18 6 4.6285 -5.0377 1.6894 19 8 5.0643 -3.9270 1.9249 20 6 5.5224 -6.2063 1.7448 21 6 6.8627 -6.2109 2.0286 22 7 7.2553 -7.4835 1.9678 23 7 6.2521 -8.2265 1.6629 24 7 5.1889 -7.5159 1.5173 25 1 4.3071 -7.8486 1.2876 26 6 2.4039 -4.0552 1.4432 27 1 -0.4849 0.8401 -0.0004 28 1 0.3555 -2.3881 0.0005 29 1 0.9390 -5.4970 0.1544 30 1 0.2632 -4.3206 -0.9996 31 1 1.4656 -6.3807 -1.9918 32 1 1.9400 -4.7855 -2.6209 33 1 3.7746 -4.8189 -0.7842 34 1 4.0056 -5.8864 -2.1899 35 1 4.4636 -7.2302 -0.2382 36 1 2.8493 -7.7237 -0.8139 37 1 3.1002 -7.2497 1.7247 38 1 1.7405 -6.4708 0.8855 39 1 7.4786 -5.3539 2.2581 40 1 2.8848 -3.2202 1.9527 41 1 1.4969 -4.3406 1.9760 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088339480.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:16 Heat of formation + Delta-G solvation = 121.397533 kcal Electronic energy + Delta-G solvation = -24941.286355 eV Core-core repulsion = 21474.835515 eV Total energy + Delta-G solvation = -3466.450839 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.67906 -40.48168 -37.97054 -35.56555 -34.09653 -33.58999 -32.20902 -31.36008 -29.78840 -27.66264 -27.05625 -24.82538 -23.62374 -23.09983 -22.32031 -21.59006 -20.85856 -19.31898 -18.14723 -17.24268 -16.91051 -16.55704 -16.34567 -15.66240 -15.34259 -14.74995 -14.41047 -14.27258 -14.08145 -13.69405 -13.37067 -12.96798 -12.68882 -12.46521 -12.31284 -12.14087 -11.85227 -11.50074 -11.35779 -11.29185 -10.98075 -10.80658 -10.77080 -10.65109 -10.25413 -10.20868 -9.97194 -9.77186 -9.69267 -9.64621 -9.21253 -8.62281 -7.03938 -5.82830 -3.12515 0.75902 2.14606 2.28065 2.82101 3.02561 3.44257 3.48105 3.50540 3.95343 4.23632 4.40640 4.51437 4.56952 4.64564 4.82389 4.97342 4.97858 5.09444 5.19921 5.31692 5.40894 5.46309 5.52953 5.64444 5.77147 5.84320 5.89366 5.92837 6.03087 6.14379 6.25176 6.28814 6.35907 6.43114 6.55847 6.66963 6.91269 7.23769 7.70157 7.96031 8.10443 8.35574 9.47500 10.00521 10.34836 11.39145 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.020879 B = 0.004817 C = 0.004187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.715991 B = 5810.926605 C = 6685.345145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.008 4.008 3 Si 0.906 3.094 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.244 4.244 8 H 0.072 0.928 9 N -0.715 5.715 10 C 0.160 3.840 11 H 0.066 0.934 12 C -0.137 4.137 13 C -0.112 4.112 14 C -0.131 4.131 15 C -0.167 4.167 16 C 0.080 3.920 17 N -0.596 5.596 18 C 0.587 3.413 19 O -0.504 6.504 20 C -0.057 4.057 21 C 0.026 3.974 22 N -0.273 5.273 23 N -0.062 5.062 24 N -0.381 5.381 25 H 0.455 0.545 26 C 0.089 3.911 27 H 0.256 0.744 28 H 0.385 0.615 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.089 0.911 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.086 0.914 37 H 0.056 0.944 38 H 0.117 0.883 39 H 0.203 0.797 40 H 0.100 0.900 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.482 -17.594 0.696 18.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.205 4.205 3 Si 0.737 3.263 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.210 1.210 7 C -0.375 4.375 8 H 0.090 0.910 9 N -0.356 5.356 10 C 0.048 3.952 11 H 0.084 0.916 12 C -0.175 4.175 13 C -0.150 4.150 14 C -0.168 4.168 15 C -0.206 4.206 16 C -0.044 4.044 17 N -0.329 5.329 18 C 0.372 3.628 19 O -0.377 6.377 20 C -0.191 4.191 21 C -0.133 4.133 22 N -0.138 5.138 23 N -0.044 5.044 24 N -0.120 5.120 25 H 0.314 0.686 26 C -0.034 4.034 27 H 0.066 0.934 28 H 0.219 0.781 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.107 0.893 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.105 0.895 37 H 0.073 0.927 38 H 0.135 0.865 39 H 0.220 0.780 40 H 0.118 0.882 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.476 -18.155 0.811 18.980 hybrid contribution -0.940 1.626 -0.072 1.880 sum 4.535 -16.529 0.739 17.156 Atomic orbital electron populations 1.69650 1.05139 1.25932 1.57326 1.24732 0.95474 0.97750 1.02495 0.86280 0.78582 0.83357 0.78085 1.21182 1.21703 1.21039 1.19239 0.91153 0.83954 1.43193 0.90994 1.42507 1.05661 0.99618 1.87821 1.21087 0.95359 0.86438 0.92267 0.91642 1.22281 0.99691 0.97909 0.97631 1.21469 0.94626 1.00043 0.98867 1.21967 0.97944 0.98143 0.98776 1.22761 1.01168 1.00361 0.96313 1.22136 1.03113 0.84436 0.94701 1.48030 1.08156 1.10826 1.65881 1.16834 0.81465 0.86395 0.78138 1.90912 1.74385 1.23542 1.48836 1.22550 0.97655 0.85873 1.13031 1.23927 0.91768 0.96505 1.01088 1.74953 1.20812 1.01830 1.16184 1.78138 0.89469 1.20788 1.16012 1.47212 1.13310 1.05586 1.45844 0.68601 1.23272 0.91290 0.86825 1.02056 0.93405 0.78110 0.92208 0.91033 0.92459 0.91664 0.89294 0.92201 0.91639 0.89514 0.92666 0.86491 0.77989 0.88181 0.91172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.27 13.06 55.49 0.72 -26.55 16 2 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 3 Si 0.91 22.30 29.55 -169.99 -5.02 17.28 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 7 C -0.24 -6.58 9.94 -15.06 -0.15 -6.73 16 8 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 9 N -0.72 -16.67 5.09 -52.87 -0.27 -16.94 16 10 C 0.16 2.83 2.40 -67.36 -0.16 2.67 16 11 H 0.07 1.28 5.39 -51.93 -0.28 1.00 16 12 C -0.14 -1.87 5.24 -26.76 -0.14 -2.01 16 13 C -0.11 -1.31 5.67 -26.95 -0.15 -1.47 16 14 C -0.13 -1.48 5.44 -26.44 -0.14 -1.63 16 15 C -0.17 -1.38 4.75 -26.29 -0.12 -1.50 16 16 C 0.08 0.69 4.76 -4.06 -0.02 0.67 16 17 N -0.60 -7.63 1.72 -174.23 -0.30 -7.93 16 18 C 0.59 8.58 6.86 -12.61 -0.09 8.49 16 19 O -0.50 -9.40 16.36 5.26 0.09 -9.31 16 20 C -0.06 -0.70 6.32 -82.33 -0.52 -1.22 16 21 C 0.03 0.33 11.87 -17.35 -0.21 0.12 16 22 N -0.27 -3.62 12.35 30.47 0.38 -3.25 16 23 N -0.06 -0.75 13.35 60.35 0.81 0.05 16 24 N -0.38 -3.85 4.67 33.31 0.16 -3.70 16 25 H 0.45 3.33 3.78 -190.33 -0.72 2.61 16 26 C 0.09 1.44 5.53 -3.38 -0.02 1.42 16 27 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 28 H 0.38 9.47 7.52 -40.82 -0.31 9.16 16 29 H 0.06 0.66 4.49 -51.93 -0.23 0.43 16 30 H 0.07 1.10 7.61 -51.93 -0.40 0.70 16 31 H 0.06 0.54 7.85 -51.93 -0.41 0.13 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.09 1.28 3.68 -51.93 -0.19 1.09 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.57 4.95 -51.93 -0.26 0.31 16 36 H 0.09 0.51 7.89 -51.93 -0.41 0.11 16 37 H 0.06 0.36 5.62 -51.93 -0.29 0.07 16 38 H 0.12 0.90 5.07 -51.93 -0.26 0.64 16 39 H 0.20 2.14 8.06 -52.49 -0.42 1.72 16 40 H 0.10 1.99 7.10 -51.93 -0.37 1.62 16 41 H 0.07 1.03 7.97 -51.93 -0.41 0.62 16 LS Contribution 311.12 15.07 4.69 4.69 Total: -1.00 -31.74 311.12 -5.93 -37.67 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -5.35 Total: 9.49 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -1.82 Total: -1.51 kcal Atomic # 7 Polarization: -59.80 SS G_CDS: 1.49 Total: -58.31 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: 0.09 Total: -9.31 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.74 -5.93 -37.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088339480.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.064 kcal (2) G-P(sol) polarization free energy of solvation -31.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds