Wall clock time and date at job start Tue Mar 31 2020 03:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86794 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47291 * 239.99817 * 3 2 1 5 5 H 1.48504 * 109.47109 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47188 * 119.99572 * 3 2 1 7 7 C 1.38820 * 119.99537 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99356 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00138 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99692 * 179.97438 * 9 7 2 11 11 H 1.08994 * 109.67238 * 325.49669 * 10 9 7 12 12 C 1.53491 * 109.67284 * 205.00039 * 10 9 7 13 13 C 1.52449 * 109.15092 * 126.01097 * 12 10 9 14 14 C 1.53122 * 109.67677 * 43.93537 * 13 12 10 15 15 C 1.53432 * 109.32864 * 77.06220 * 14 13 12 16 16 C 1.53416 * 108.49356 * 287.67645 * 15 14 13 17 17 N 1.46070 * 110.11050 * 316.34091 * 16 15 14 18 18 C 1.34781 * 120.16785 * 293.08715 * 17 16 15 19 19 O 1.21615 * 119.99785 * 174.26693 * 18 17 16 20 20 C 1.47230 * 119.99860 * 354.26373 * 18 17 16 21 21 C 1.37008 * 127.18624 * 179.18527 * 20 18 17 22 22 N 1.33319 * 106.37104 * 179.90756 * 21 20 18 23 23 N 1.28506 * 109.43926 * 0.36834 * 22 21 20 24 24 N 1.28705 * 110.64157 * 359.76793 * 23 22 21 25 25 H 0.97009 * 126.04101 * 180.02562 * 24 23 22 26 26 C 1.47129 * 119.65850 * 113.05712 * 17 16 15 27 27 H 0.97000 * 119.99410 * 0.02562 * 1 2 3 28 28 H 0.96998 * 120.00156 * 359.97438 * 9 7 2 29 29 H 1.08997 * 109.52301 * 245.91536 * 12 10 9 30 30 H 1.09000 * 109.52307 * 6.10769 * 12 10 9 31 31 H 1.09004 * 109.43736 * 163.99773 * 13 12 10 32 32 H 1.08995 * 109.43837 * 283.87294 * 13 12 10 33 33 H 1.08995 * 109.49884 * 317.10186 * 14 13 12 34 34 H 1.08999 * 109.52140 * 197.02871 * 14 13 12 35 35 H 1.08998 * 109.63553 * 167.97301 * 15 14 13 36 36 H 1.09005 * 109.62993 * 47.37408 * 15 14 13 37 37 H 1.09000 * 109.36434 * 196.14478 * 16 15 14 38 38 H 1.09003 * 109.36716 * 76.54099 * 16 15 14 39 39 H 1.08001 * 126.81326 * 0.02562 * 21 20 18 40 40 H 1.08998 * 109.84526 * 168.33706 * 26 17 16 41 41 H 1.08999 * 109.90188 * 47.38783 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0102 -1.2023 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9739 -3.5517 -0.5808 12 6 1.1820 -4.7593 -0.6103 13 6 1.9452 -5.4336 -1.7446 14 6 3.3908 -5.6925 -1.3109 15 6 3.4310 -6.9108 -0.3792 16 6 2.8263 -6.5099 0.9726 17 7 3.3272 -5.1989 1.3777 18 6 4.6285 -5.0377 1.6894 19 8 5.0643 -3.9270 1.9249 20 6 5.5224 -6.2063 1.7448 21 6 6.8627 -6.2109 2.0286 22 7 7.2553 -7.4835 1.9678 23 7 6.2521 -8.2265 1.6629 24 7 5.1889 -7.5159 1.5173 25 1 4.3071 -7.8486 1.2876 26 6 2.4039 -4.0552 1.4432 27 1 -0.4849 0.8401 -0.0004 28 1 0.3555 -2.3881 0.0005 29 1 0.9390 -5.4970 0.1544 30 1 0.2632 -4.3206 -0.9996 31 1 1.4656 -6.3807 -1.9918 32 1 1.9400 -4.7855 -2.6209 33 1 3.7746 -4.8189 -0.7842 34 1 4.0056 -5.8864 -2.1899 35 1 4.4636 -7.2302 -0.2382 36 1 2.8493 -7.7237 -0.8139 37 1 3.1002 -7.2497 1.7247 38 1 1.7405 -6.4708 0.8855 39 1 7.4786 -5.3539 2.2581 40 1 2.8848 -3.2202 1.9527 41 1 1.4969 -4.3406 1.9760 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088339480.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:15 Heat of formation + Delta-G solvation = 98.745389 kcal Electronic energy + Delta-G solvation = -24942.268625 eV Core-core repulsion = 21474.835515 eV Total energy + Delta-G solvation = -3467.433110 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.64232 -41.58850 -39.16581 -36.94663 -35.33062 -34.77494 -33.70619 -32.45656 -31.27457 -28.89139 -28.12390 -26.32291 -24.91310 -24.30930 -23.33881 -22.76253 -21.88771 -20.48419 -19.17344 -19.12781 -17.91781 -17.68159 -17.47672 -16.88809 -16.46833 -16.13071 -15.73681 -15.43139 -15.34674 -15.13082 -14.85156 -14.21576 -13.80200 -13.60917 -13.37954 -13.22033 -13.05898 -12.89863 -12.72274 -12.49052 -12.35404 -12.31991 -12.21945 -11.88828 -11.74780 -11.63954 -11.40018 -11.06637 -11.01957 -10.86579 -10.67045 -9.94612 -8.95745 -7.97101 -5.24302 -0.24196 1.14503 1.33193 1.44987 1.46705 1.52929 1.78335 1.93220 2.55029 3.01117 3.36103 3.44318 3.53596 3.74829 3.80019 3.86951 3.97924 4.01529 4.04562 4.17990 4.30220 4.34011 4.43703 4.56024 4.66775 4.77049 4.83272 4.89634 5.01344 5.03361 5.08121 5.19230 5.32875 5.42142 5.46465 5.55086 5.57700 5.62520 6.14284 6.27263 6.83128 7.12941 7.33701 8.08505 8.31294 9.25169 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.020879 B = 0.004817 C = 0.004187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.715991 B = 5810.926605 C = 6685.345145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.064 4.064 3 Si 0.960 3.040 4 H -0.281 1.281 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.240 4.240 8 H 0.061 0.939 9 N -0.727 5.727 10 C 0.157 3.843 11 H 0.045 0.955 12 C -0.128 4.128 13 C -0.106 4.106 14 C -0.131 4.131 15 C -0.159 4.159 16 C 0.069 3.931 17 N -0.587 5.587 18 C 0.588 3.412 19 O -0.556 6.556 20 C -0.060 4.060 21 C 0.026 3.974 22 N -0.292 5.292 23 N -0.058 5.058 24 N -0.354 5.354 25 H 0.467 0.533 26 C 0.103 3.897 27 H 0.252 0.748 28 H 0.377 0.623 29 H 0.096 0.904 30 H 0.055 0.945 31 H 0.095 0.905 32 H 0.041 0.959 33 H 0.052 0.948 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.128 0.872 37 H 0.088 0.912 38 H 0.136 0.864 39 H 0.213 0.787 40 H 0.055 0.945 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.275 -20.750 0.551 21.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.257 4.257 3 Si 0.790 3.210 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.372 4.372 8 H 0.079 0.921 9 N -0.368 5.368 10 C 0.047 3.953 11 H 0.063 0.937 12 C -0.166 4.166 13 C -0.144 4.144 14 C -0.169 4.169 15 C -0.197 4.197 16 C -0.053 4.053 17 N -0.319 5.319 18 C 0.374 3.626 19 O -0.433 6.433 20 C -0.194 4.194 21 C -0.134 4.134 22 N -0.157 5.157 23 N -0.040 5.040 24 N -0.096 5.096 25 H 0.330 0.670 26 C -0.022 4.022 27 H 0.061 0.939 28 H 0.210 0.790 29 H 0.114 0.886 30 H 0.073 0.927 31 H 0.114 0.886 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.147 0.853 37 H 0.105 0.895 38 H 0.154 0.846 39 H 0.229 0.771 40 H 0.074 0.926 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.278 -21.404 0.652 22.055 hybrid contribution -0.828 2.490 -0.055 2.625 sum 4.450 -18.914 0.596 19.440 Atomic orbital electron populations 1.69765 1.06145 1.26071 1.59310 1.25366 0.96259 1.00443 1.03643 0.85413 0.77449 0.80184 0.77958 1.20755 1.21641 1.21058 1.19421 0.90863 0.85626 1.41252 0.92077 1.42632 1.05393 1.00637 1.88099 1.21294 0.94961 0.85744 0.93256 0.93707 1.22203 0.98159 0.97111 0.99085 1.21442 0.94867 1.01082 0.96985 1.21881 0.97476 0.98225 0.99320 1.22760 1.01865 0.99917 0.95166 1.22533 1.04245 0.82584 0.95917 1.47912 1.07191 1.11635 1.65162 1.17061 0.81953 0.86290 0.77296 1.90889 1.75416 1.25669 1.51285 1.22087 0.97167 0.85890 1.14291 1.24190 0.92099 0.96725 1.00383 1.74978 1.21401 1.02045 1.17234 1.78094 0.89703 1.20670 1.15563 1.47145 1.13562 1.04422 1.44461 0.67007 1.22738 0.92068 0.87115 1.00245 0.93929 0.79029 0.88639 0.92656 0.88625 0.93987 0.92949 0.91863 0.91861 0.85346 0.89454 0.84624 0.77067 0.92602 0.89082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.66 13.06 21.65 0.28 -57.37 16 2 C -0.06 -3.68 5.50 84.86 0.47 -3.21 16 3 Si 0.96 47.00 29.55 68.60 2.03 49.02 16 4 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 5 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 6 H -0.28 -13.76 7.11 99.48 0.71 -13.05 16 7 C -0.24 -13.34 9.94 84.04 0.84 -12.51 16 8 H 0.06 3.47 7.83 -2.91 -0.02 3.44 16 9 N -0.73 -34.88 5.09 -321.18 -1.63 -36.52 16 10 C 0.16 5.60 2.40 45.36 0.11 5.71 16 11 H 0.05 1.82 5.39 -2.39 -0.01 1.80 16 12 C -0.13 -3.24 5.24 30.58 0.16 -3.08 16 13 C -0.11 -2.20 5.67 30.45 0.17 -2.03 16 14 C -0.13 -2.68 5.44 30.78 0.17 -2.51 16 15 C -0.16 -1.90 4.75 30.88 0.15 -1.75 16 16 C 0.07 0.90 4.76 86.60 0.41 1.31 16 17 N -0.59 -14.18 1.72 -823.39 -1.42 -15.60 16 18 C 0.59 16.95 6.86 86.61 0.59 17.54 16 19 O -0.56 -21.57 16.36 -4.08 -0.07 -21.64 16 20 C -0.06 -1.38 6.32 40.41 0.26 -1.12 16 21 C 0.03 0.61 11.87 84.18 1.00 1.61 16 22 N -0.29 -7.23 12.35 -57.50 -0.71 -7.94 16 23 N -0.06 -1.24 13.35 37.02 0.49 -0.75 16 24 N -0.35 -6.00 4.67 -48.52 -0.23 -6.23 16 25 H 0.47 4.68 3.78 -219.89 -0.83 3.85 16 26 C 0.10 3.31 5.53 86.47 0.48 3.79 16 27 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 28 H 0.38 19.03 7.52 -92.71 -0.70 18.33 16 29 H 0.10 1.72 4.49 -2.39 -0.01 1.71 16 30 H 0.05 1.63 7.61 -2.39 -0.02 1.61 16 31 H 0.10 1.31 7.85 -2.38 -0.02 1.29 16 32 H 0.04 1.06 8.14 -2.39 -0.02 1.05 16 33 H 0.05 1.49 3.68 -2.39 -0.01 1.48 16 34 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.06 0.82 4.95 -2.39 -0.01 0.81 16 36 H 0.13 0.62 7.89 -2.38 -0.02 0.61 16 37 H 0.09 0.66 5.62 -2.39 -0.01 0.64 16 38 H 0.14 1.32 5.07 -2.39 -0.01 1.31 16 39 H 0.21 4.43 8.06 -2.91 -0.02 4.40 16 40 H 0.06 2.32 7.10 -2.39 -0.02 2.31 16 41 H 0.09 2.55 7.97 -2.39 -0.02 2.53 16 Total: -1.00 -73.16 311.12 3.12 -70.04 By element: Atomic # 1 Polarization: 23.63 SS G_CDS: -0.42 Total: 23.21 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: 4.80 Total: 3.76 kcal Atomic # 7 Polarization: -121.19 SS G_CDS: -3.21 Total: -124.40 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: -0.07 Total: -21.64 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 2.03 Total: 49.02 kcal Total: -73.16 3.12 -70.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088339480.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.789 kcal (2) G-P(sol) polarization free energy of solvation -73.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds