Wall clock time and date at job start Tue Mar 31 2020 03:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36600 * 126.58125 * 2 1 4 4 C 1.47525 * 125.76960 * 359.97284 * 3 2 1 5 5 O 1.21590 * 119.99858 * 0.02562 * 4 3 2 6 6 N 1.34771 * 119.99577 * 179.97438 * 4 3 2 7 7 C 1.46505 * 119.99559 * 179.97438 * 6 4 3 8 8 H 1.09002 * 110.64189 * 325.70536 * 7 6 4 9 9 C 1.55157 * 110.71610 * 88.84735 * 7 6 4 10 10 C 1.54914 * 101.58180 * 154.04431 * 9 7 6 11 11 N 1.47431 * 104.82819 * 322.98999 * 10 9 7 12 12 C 1.36938 * 125.64246 * 204.17306 * 11 10 9 13 13 H 1.08002 * 119.99579 * 179.97438 * 12 11 10 14 14 C 1.38810 * 120.00588 * 359.96966 * 12 11 10 15 15 N 1.31616 * 119.99510 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00207 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47242 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47110 * 120.00209 * 16 14 12 19 19 H 1.48502 * 109.47171 * 240.00251 * 16 14 12 20 20 C 1.47479 * 108.75937 * 24.10728 * 11 10 9 21 21 H 1.09001 * 109.96484 * 239.64636 * 20 11 10 22 22 C 1.52997 * 110.03102 * 118.33822 * 20 11 10 23 23 N 1.34407 * 108.45972 * 180.24121 * 3 2 1 24 24 N 1.28766 * 109.52050 * 359.58226 * 23 3 2 25 25 N 1.34816 * 126.58071 * 179.97438 * 2 1 3 26 26 C 1.46499 * 126.59251 * 0.02562 * 25 2 1 27 27 H 1.09002 * 109.46781 * 90.00428 * 1 2 3 28 28 H 1.08998 * 109.47193 * 209.99685 * 1 2 3 29 29 H 1.08998 * 109.47176 * 330.00673 * 1 2 3 30 30 H 0.96995 * 120.00838 * 0.02562 * 6 4 3 31 31 H 1.09004 * 111.00537 * 272.11719 * 9 7 6 32 32 H 1.08993 * 111.00657 * 35.93181 * 9 7 6 33 33 H 1.08999 * 110.36938 * 81.82606 * 10 9 7 34 34 H 1.09003 * 110.36526 * 204.15298 * 10 9 7 35 35 H 0.97002 * 120.00010 * 179.97438 * 15 14 12 36 36 H 1.09000 * 109.47185 * 302.38640 * 22 20 11 37 37 H 1.08996 * 109.47557 * 62.38682 * 22 20 11 38 38 H 1.09002 * 109.47281 * 182.38957 * 22 20 11 39 39 H 1.09000 * 109.47157 * 89.99902 * 26 25 2 40 40 H 1.09005 * 109.46892 * 209.99308 * 26 25 2 41 41 H 1.08997 * 109.47315 * 329.99223 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3211 1.0969 0.0000 4 6 1.8738 2.5027 -0.0006 5 8 0.6860 2.7628 -0.0006 6 7 2.7818 3.4987 0.0000 7 6 2.3376 4.8948 -0.0011 8 1 1.4187 5.0052 -0.5769 9 6 2.1417 5.4096 1.4494 10 6 2.3581 6.9331 1.2706 11 7 3.4287 7.0464 0.2634 12 6 4.2722 8.1145 0.1122 13 1 5.0278 8.1009 -0.6594 14 6 4.1562 9.2148 0.9505 15 7 3.2357 9.2312 1.8911 16 14 5.3065 10.6720 0.7438 17 1 6.2438 10.4076 -0.3773 18 1 4.5124 11.8913 0.4474 19 1 6.0774 10.8758 1.9966 20 6 3.4428 5.8190 -0.5540 21 1 4.4124 5.3279 -0.4714 22 6 3.1522 6.1601 -2.0169 23 7 3.5985 0.6789 -0.0054 24 7 3.6299 -0.6084 0.0001 25 7 2.3104 -1.0826 0.0005 26 6 1.8863 -2.4849 0.0006 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5137 30 1 3.7293 3.2913 0.0004 31 1 1.1339 5.1974 1.8066 32 1 2.8890 4.9842 2.1192 33 1 1.4452 7.4060 0.9087 34 1 2.6730 7.3845 2.2114 35 1 3.1549 9.9998 2.4772 36 1 2.1903 6.6679 -2.0874 37 1 3.9364 6.8127 -2.4006 38 1 3.1228 5.2429 -2.6050 39 1 1.7815 -2.8328 -1.0270 40 1 2.6330 -3.0902 0.5147 41 1 0.9292 -2.5750 0.5142 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088503762.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:31 Heat of formation + Delta-G solvation = 62.092214 kcal Electronic energy + Delta-G solvation = -23625.461735 eV Core-core repulsion = 20156.439224 eV Total energy + Delta-G solvation = -3469.022511 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.29890 -40.78569 -39.05781 -36.03672 -35.48061 -33.81208 -33.26285 -32.03875 -30.61677 -29.05152 -28.31958 -26.54920 -25.81807 -24.34190 -22.34577 -21.90050 -21.52956 -21.18306 -18.98331 -18.65476 -17.47588 -17.40351 -16.86775 -16.61882 -15.81451 -15.68328 -15.56526 -15.22496 -14.97863 -14.37460 -14.23918 -14.12550 -13.99213 -13.94607 -13.66031 -13.23965 -13.22028 -12.96328 -12.91752 -12.73758 -12.60704 -12.22856 -12.17714 -12.08865 -11.93053 -11.56649 -11.42995 -11.16548 -11.06984 -10.72300 -10.29704 -9.93716 -8.88176 -7.72925 -5.17655 0.11543 0.59038 1.13916 1.49484 1.49990 1.60205 2.08050 2.21742 2.53504 3.16987 3.37304 3.43474 3.62107 3.63006 3.78805 3.85502 3.97970 4.22023 4.32490 4.40896 4.52122 4.60145 4.63563 4.67900 4.68586 4.69643 4.82507 4.87797 4.95470 5.05795 5.10078 5.15978 5.36238 5.51900 5.52492 5.61767 5.62959 5.82266 6.32615 6.43751 6.88998 7.13455 7.14186 7.80210 8.44101 9.29142 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.035650 B = 0.003219 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.217993 B = 8694.993779 C = 8927.415262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.134 3.866 3 C -0.132 4.132 4 C 0.606 3.394 5 O -0.558 6.558 6 N -0.696 5.696 7 C 0.154 3.846 8 H 0.091 0.909 9 C -0.138 4.138 10 C 0.159 3.841 11 N -0.615 5.615 12 C -0.225 4.225 13 H 0.083 0.917 14 C -0.069 4.069 15 N -0.950 5.950 16 Si 0.978 3.022 17 H -0.266 1.266 18 H -0.295 1.295 19 H -0.293 1.293 20 C 0.148 3.852 21 H 0.045 0.955 22 C -0.145 4.145 23 N -0.226 5.226 24 N -0.093 5.093 25 N -0.353 5.353 26 C 0.072 3.928 27 H 0.106 0.894 28 H 0.114 0.886 29 H 0.092 0.908 30 H 0.411 0.589 31 H 0.073 0.927 32 H 0.063 0.937 33 H -0.009 1.009 34 H 0.077 0.923 35 H 0.246 0.754 36 H 0.041 0.959 37 H 0.047 0.953 38 H 0.068 0.932 39 H 0.109 0.891 40 H 0.110 0.890 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.249 -25.583 -4.591 26.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.006 4.006 3 C -0.272 4.272 4 C 0.392 3.608 5 O -0.437 6.437 6 N -0.346 5.346 7 C 0.049 3.951 8 H 0.109 0.891 9 C -0.178 4.178 10 C 0.033 3.967 11 N -0.340 5.340 12 C -0.354 4.354 13 H 0.101 0.899 14 C -0.261 4.261 15 N -0.601 5.601 16 Si 0.807 3.193 17 H -0.191 1.191 18 H -0.222 1.222 19 H -0.220 1.220 20 C 0.041 3.959 21 H 0.063 0.937 22 C -0.204 4.204 23 N -0.098 5.098 24 N -0.073 5.073 25 N -0.139 5.139 26 C -0.067 4.067 27 H 0.124 0.876 28 H 0.132 0.868 29 H 0.111 0.889 30 H 0.247 0.753 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.009 0.991 34 H 0.095 0.905 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.087 0.913 39 H 0.128 0.872 40 H 0.129 0.871 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.533 -25.667 -4.529 26.644 hybrid contribution 0.138 1.286 0.110 1.298 sum -5.395 -24.380 -4.418 25.358 Atomic orbital electron populations 1.20842 0.82148 1.06311 1.05765 1.22341 0.97469 0.85696 0.95081 1.21216 0.89660 0.95364 1.20960 1.16890 0.85294 0.83002 0.75652 1.90735 1.16488 1.84037 1.52391 1.45724 1.10386 1.05035 1.73452 1.21812 0.97441 0.79148 0.96697 0.89099 1.23215 1.01238 0.97151 0.96201 1.21670 0.89015 0.91013 0.94956 1.44843 1.37238 1.15882 1.36045 1.19427 1.09262 0.93819 1.12909 0.89886 1.25597 1.00840 1.01123 0.98575 1.70046 1.36960 1.30366 1.22683 0.85000 0.78024 0.78985 0.77269 1.19062 1.22192 1.22042 1.21275 0.95860 0.87292 0.91424 0.93731 1.22089 1.00975 1.00925 0.96386 1.74577 1.19834 1.04948 1.10488 1.81883 0.97998 1.03008 1.24413 1.50619 1.05180 1.09395 1.48702 1.22733 1.04177 0.73063 1.06679 0.87573 0.86792 0.88915 0.75292 0.90842 0.91804 0.99137 0.90509 0.94441 0.93943 0.93413 0.91308 0.87222 0.87112 0.85371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.14 9.57 71.23 0.68 -0.46 16 2 C 0.13 2.63 7.02 41.72 0.29 2.92 16 3 C -0.13 -3.61 6.99 40.82 0.29 -3.33 16 4 C 0.61 19.08 7.82 86.69 0.68 19.75 16 5 O -0.56 -19.18 14.40 -4.00 -0.06 -19.23 16 6 N -0.70 -22.48 5.19 -440.08 -2.28 -24.76 16 7 C 0.15 5.75 2.79 46.18 0.13 5.88 16 8 H 0.09 3.50 7.33 -2.39 -0.02 3.48 16 9 C -0.14 -5.66 6.77 31.99 0.22 -5.45 16 10 C 0.16 8.10 5.89 86.86 0.51 8.61 16 11 N -0.61 -31.63 3.14 -667.16 -2.10 -33.72 16 12 C -0.23 -12.54 9.92 84.03 0.83 -11.71 16 13 H 0.08 4.43 7.83 -2.91 -0.02 4.41 16 14 C -0.07 -3.94 5.49 84.86 0.47 -3.48 16 15 N -0.95 -57.22 10.09 21.65 0.22 -57.00 16 16 Si 0.98 46.15 29.55 68.60 2.03 48.18 16 17 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 18 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 19 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 20 C 0.15 6.10 3.50 45.25 0.16 6.26 16 21 H 0.05 1.80 7.70 -2.39 -0.02 1.79 16 22 C -0.14 -5.38 9.15 71.98 0.66 -4.72 16 23 N -0.23 -6.55 12.04 -49.99 -0.60 -7.15 16 24 N -0.09 -2.35 13.78 37.02 0.51 -1.84 16 25 N -0.35 -5.92 4.03 -355.10 -1.43 -7.35 16 26 C 0.07 0.29 11.33 127.77 1.45 1.74 16 27 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.11 0.47 7.18 -2.39 -0.02 0.45 16 29 H 0.09 1.66 6.43 -2.39 -0.02 1.64 16 30 H 0.41 12.55 8.02 -92.71 -0.74 11.80 16 31 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 32 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 33 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 34 H 0.08 4.43 5.87 -2.39 -0.01 4.42 16 35 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 36 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.05 1.82 8.06 -2.39 -0.02 1.80 16 38 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.11 0.07 8.14 -2.39 -0.02 0.05 16 40 H 0.11 0.29 8.14 -2.38 -0.02 0.27 16 41 H 0.13 -0.26 7.16 -2.39 -0.02 -0.28 16 Total: -1.00 -74.22 338.81 2.95 -71.27 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: 0.31 Total: 15.60 kcal Atomic # 6 Polarization: 9.65 SS G_CDS: 6.36 Total: 16.01 kcal Atomic # 7 Polarization: -126.14 SS G_CDS: -5.68 Total: -131.82 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: -0.06 Total: -19.23 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -74.22 2.95 -71.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088503762.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.362 kcal (2) G-P(sol) polarization free energy of solvation -74.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds