Wall clock time and date at job start Tue Mar 31 2020 03:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30827 * 125.96320 * 2 1 4 4 C 1.33236 * 109.83381 * 179.86972 * 3 2 1 5 5 C 1.50698 * 125.53383 * 180.12555 * 4 3 2 6 6 C 1.50699 * 109.47230 * 270.29948 * 5 4 3 7 7 O 1.21280 * 120.00036 * 359.97438 * 6 5 4 8 8 N 1.34780 * 119.99937 * 179.97438 * 6 5 4 9 9 C 1.46493 * 120.00018 * 179.97438 * 8 6 5 10 10 H 1.09007 * 110.64249 * 325.69967 * 9 8 6 11 11 C 1.55155 * 110.72120 * 88.84377 * 9 8 6 12 12 C 1.54912 * 101.58470 * 153.86747 * 11 9 8 13 13 N 1.47426 * 104.82654 * 322.99047 * 12 11 9 14 14 C 1.36940 * 125.64629 * 204.16890 * 13 12 11 15 15 H 1.07999 * 120.00299 * 179.97438 * 14 13 12 16 16 C 1.38817 * 119.99901 * 359.97438 * 14 13 12 17 17 N 1.31623 * 119.99911 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 119.99896 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47384 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47410 * 119.99902 * 18 16 14 21 21 H 1.48507 * 109.47138 * 239.99803 * 18 16 14 22 22 C 1.47314 * 108.74033 * 24.28636 * 13 12 11 23 23 H 1.09004 * 109.84791 * 239.38923 * 22 13 12 24 24 C 1.52998 * 110.06692 * 118.12902 * 22 13 12 25 25 N 1.30721 * 108.94296 * 0.40224 * 4 3 2 26 26 N 1.34426 * 125.95770 * 180.31205 * 2 1 3 27 27 H 0.97004 * 126.82657 * 359.94238 * 26 2 1 28 28 H 1.09001 * 109.46953 * 269.68737 * 1 2 3 29 29 H 1.09000 * 109.47318 * 29.68335 * 1 2 3 30 30 H 1.09000 * 109.47161 * 149.68966 * 1 2 3 31 31 H 1.09004 * 109.46694 * 30.29653 * 5 4 3 32 32 H 1.08996 * 109.47267 * 150.28864 * 5 4 3 33 33 H 0.96999 * 119.99786 * 359.97438 * 8 6 5 34 34 H 1.09003 * 111.00193 * 271.94046 * 11 9 8 35 35 H 1.08996 * 111.00297 * 35.75178 * 11 9 8 36 36 H 1.08997 * 110.36480 * 81.82491 * 12 11 9 37 37 H 1.08993 * 110.36873 * 204.15212 * 12 11 9 38 38 H 0.96998 * 119.99543 * 180.02562 * 17 16 14 39 39 H 1.08999 * 109.47020 * 302.26734 * 24 22 13 40 40 H 1.08996 * 109.47009 * 62.26665 * 24 22 13 41 41 H 1.08999 * 109.47132 * 182.26648 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2754 1.0589 0.0000 4 6 3.5553 0.6888 0.0028 5 6 4.7373 1.6235 0.0065 6 6 5.1302 1.9420 -1.4131 7 8 4.5116 1.4573 -2.3368 8 7 6.1691 2.7656 -1.6562 9 6 6.5514 3.0748 -3.0361 10 1 6.3854 2.2133 -3.6831 11 6 5.7725 4.3111 -3.5577 12 6 6.7409 4.8564 -4.6368 13 7 8.0883 4.6359 -4.0806 14 6 9.2151 5.3377 -4.4168 15 1 10.1594 5.0988 -3.9502 16 6 9.1437 6.3561 -5.3574 17 7 7.9930 6.6469 -5.9265 18 14 10.6809 7.3128 -5.8166 19 1 11.8368 6.7940 -5.0420 20 1 10.9476 7.1540 -7.2688 21 1 10.4807 8.7509 -5.5045 22 6 8.0232 3.5339 -3.1052 23 1 8.3478 3.8865 -2.1262 24 6 8.9092 2.3739 -3.5637 25 7 3.6195 -0.6169 -0.0040 26 7 2.2964 -1.0881 -0.0059 27 1 2.0093 -2.0147 -0.0102 28 1 -0.3633 -0.0056 1.0277 29 1 -0.3634 0.8928 -0.5089 30 1 -0.3633 -0.8872 -0.5186 31 1 4.4706 2.5445 0.5250 32 1 5.5747 1.1484 0.5175 33 1 6.6636 3.1535 -0.9173 34 1 4.8211 4.0154 -4.0000 35 1 5.6211 5.0414 -2.7628 36 1 6.6202 4.3042 -5.5687 37 1 6.5672 5.9200 -4.7998 38 1 7.9433 7.3582 -6.5840 39 1 8.5896 2.0410 -4.5512 40 1 9.9465 2.7054 -3.6101 41 1 8.8226 1.5490 -2.8566 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088558001.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:56 Heat of formation + Delta-G solvation = 71.770775 kcal Electronic energy + Delta-G solvation = -23254.384433 eV Core-core repulsion = 19785.781616 eV Total energy + Delta-G solvation = -3468.602817 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.30744 -39.57806 -37.50523 -33.98425 -33.79971 -32.54439 -32.03931 -30.42054 -30.07932 -28.52094 -27.78356 -24.67410 -23.95515 -22.00493 -21.14851 -20.26721 -20.08748 -19.44526 -18.06198 -17.06007 -16.71789 -15.92407 -15.59822 -15.15139 -14.77711 -14.43397 -14.03649 -13.80910 -13.62062 -13.38426 -13.08050 -13.00029 -12.76327 -12.36276 -12.11062 -12.02465 -11.79526 -11.53663 -11.10681 -10.84697 -10.81716 -10.50222 -10.39005 -10.30147 -10.17827 -10.04899 -9.77998 -9.72386 -9.57256 -9.42556 -8.66009 -8.56223 -6.85301 -5.63483 -3.06298 1.40918 2.42411 2.62467 2.83461 3.40456 3.44005 3.47701 3.48986 3.80921 4.33217 4.49815 4.53925 4.94401 4.97002 5.03910 5.21698 5.34440 5.42056 5.44611 5.46828 5.58731 5.67386 5.86727 6.06488 6.15661 6.23141 6.29543 6.35150 6.39565 6.58255 6.64597 6.77095 6.84703 6.90080 7.15191 7.55172 7.64824 7.76409 7.87878 7.93530 8.36711 8.45742 9.22589 9.83335 10.47550 11.39850 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.041194 B = 0.002891 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.551913 B = 9683.760616 C =10044.116088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.282 3.718 3 N -0.529 5.529 4 C 0.255 3.745 5 C -0.051 4.051 6 C 0.521 3.479 7 O -0.534 6.534 8 N -0.714 5.714 9 C 0.136 3.864 10 H 0.091 0.909 11 C -0.152 4.152 12 C 0.153 3.847 13 N -0.596 5.596 14 C -0.219 4.219 15 H 0.078 0.922 16 C -0.012 4.012 17 N -0.921 5.921 18 Si 0.914 3.086 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.291 1.291 22 C 0.155 3.845 23 H 0.037 0.963 24 C -0.155 4.155 25 N -0.305 5.305 26 N -0.483 5.483 27 H 0.439 0.561 28 H 0.091 0.909 29 H 0.099 0.901 30 H 0.082 0.918 31 H 0.122 0.878 32 H 0.117 0.883 33 H 0.399 0.601 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.013 0.987 37 H 0.109 0.891 38 H 0.251 0.749 39 H 0.051 0.949 40 H 0.054 0.946 41 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.302 -13.080 14.905 23.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.003 3.997 3 N -0.258 5.258 4 C -0.028 4.028 5 C -0.093 4.093 6 C 0.304 3.696 7 O -0.410 6.410 8 N -0.365 5.365 9 C 0.032 3.968 10 H 0.109 0.891 11 C -0.192 4.192 12 C 0.028 3.972 13 N -0.321 5.321 14 C -0.347 4.347 15 H 0.096 0.904 16 C -0.207 4.207 17 N -0.569 5.569 18 Si 0.745 3.255 19 H -0.206 1.206 20 H -0.218 1.218 21 H -0.218 1.218 22 C 0.047 3.953 23 H 0.055 0.945 24 C -0.215 4.215 25 N -0.134 5.134 26 N -0.202 5.202 27 H 0.284 0.716 28 H 0.109 0.891 29 H 0.118 0.882 30 H 0.101 0.899 31 H 0.140 0.860 32 H 0.135 0.865 33 H 0.233 0.767 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.031 0.969 37 H 0.127 0.873 38 H 0.062 0.938 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -12.087 -13.263 14.075 22.806 hybrid contribution 0.709 -0.078 -0.025 0.714 sum -11.378 -13.341 14.050 22.469 Atomic orbital electron populations 1.20388 0.83663 1.05155 1.04381 1.24365 0.96606 0.82787 0.95920 1.70299 1.01304 1.29516 1.24723 1.23269 0.92638 0.89682 0.97259 1.19930 0.93710 0.98877 0.96826 1.20061 0.80399 0.78861 0.90243 1.90724 1.52456 1.51942 1.45888 1.45983 1.32735 1.48344 1.09455 1.22142 0.95224 0.98282 0.81174 0.89106 1.23390 0.98951 0.96275 1.00597 1.21944 0.81452 1.02933 0.90859 1.44581 1.05991 1.35575 1.45965 1.19074 0.86943 1.10283 1.18389 0.90409 1.24795 0.97237 0.99515 0.99156 1.69814 1.22625 1.33206 1.31268 0.86010 0.81905 0.79692 0.77941 1.20567 1.21818 1.21774 1.21051 0.91071 0.89215 0.93991 0.94494 1.22230 1.00923 0.97762 1.00544 1.77974 0.96650 1.12277 1.26528 1.47922 1.04293 1.09952 1.58013 0.71603 0.89051 0.88239 0.89914 0.85986 0.86510 0.76669 0.92060 0.91898 0.96863 0.87321 0.93767 0.92978 0.92728 0.94268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.40 10.51 36.01 0.38 -0.02 16 2 C 0.28 2.93 8.24 -155.70 -1.28 1.65 16 3 N -0.53 -7.39 11.19 -8.16 -0.09 -7.48 16 4 C 0.25 3.61 6.63 -156.85 -1.04 2.57 16 5 C -0.05 -0.59 6.33 -29.04 -0.18 -0.78 16 6 C 0.52 8.09 7.82 -10.98 -0.09 8.00 16 7 O -0.53 -10.74 15.72 5.56 0.09 -10.65 16 8 N -0.71 -10.54 5.19 -52.03 -0.27 -10.81 16 9 C 0.14 2.54 2.79 -66.10 -0.18 2.35 16 10 H 0.09 1.85 7.33 -51.92 -0.38 1.47 16 11 C -0.15 -3.11 6.77 -24.58 -0.17 -3.27 16 12 C 0.15 3.79 5.89 -2.53 -0.01 3.77 16 13 N -0.60 -14.93 3.14 -162.35 -0.51 -15.44 16 14 C -0.22 -5.96 9.91 -15.06 -0.15 -6.11 16 15 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 16 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16 17 N -0.92 -26.81 10.09 55.49 0.56 -26.25 16 18 Si 0.91 21.97 29.55 -169.99 -5.02 16.95 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 C 0.15 3.12 3.49 -66.79 -0.23 2.88 16 23 H 0.04 0.71 7.70 -51.93 -0.40 0.31 16 24 C -0.16 -2.92 9.15 37.16 0.34 -2.58 16 25 N -0.31 -4.25 12.80 32.42 0.41 -3.83 16 26 N -0.48 -4.90 7.45 32.62 0.24 -4.66 16 27 H 0.44 2.64 8.96 -182.33 -1.63 1.00 16 28 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.12 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.12 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.40 4.65 8.34 -40.82 -0.34 4.31 16 34 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 35 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.11 3.00 5.87 -51.93 -0.30 2.69 16 38 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 39 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 40 H 0.05 1.05 8.06 -51.93 -0.42 0.63 16 41 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 343.28 15.07 5.17 5.17 Total: -1.00 -36.66 343.28 -9.39 -46.04 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -7.25 Total: 2.90 kcal Atomic # 6 Polarization: 10.77 SS G_CDS: -2.72 Total: 8.06 kcal Atomic # 7 Polarization: -68.82 SS G_CDS: 0.35 Total: -68.47 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.09 Total: -10.65 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -36.66 -9.39 -46.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088558001.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.815 kcal (2) G-P(sol) polarization free energy of solvation -36.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds