Wall clock time and date at job start Tue Mar 31 2020 03:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30827 * 125.96320 * 2 1 4 4 C 1.33236 * 109.83381 * 179.86972 * 3 2 1 5 5 C 1.50698 * 125.53383 * 180.12555 * 4 3 2 6 6 C 1.50699 * 109.47230 * 270.29948 * 5 4 3 7 7 O 1.21280 * 120.00036 * 359.97438 * 6 5 4 8 8 N 1.34780 * 119.99937 * 179.97438 * 6 5 4 9 9 C 1.46493 * 120.00018 * 179.97438 * 8 6 5 10 10 H 1.09007 * 110.64249 * 325.69967 * 9 8 6 11 11 C 1.55155 * 110.72120 * 88.84377 * 9 8 6 12 12 C 1.54912 * 101.58470 * 153.86747 * 11 9 8 13 13 N 1.47426 * 104.82654 * 322.99047 * 12 11 9 14 14 C 1.36940 * 125.64629 * 204.16890 * 13 12 11 15 15 H 1.07999 * 120.00299 * 179.97438 * 14 13 12 16 16 C 1.38817 * 119.99901 * 359.97438 * 14 13 12 17 17 N 1.31623 * 119.99911 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 119.99896 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47384 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47410 * 119.99902 * 18 16 14 21 21 H 1.48507 * 109.47138 * 239.99803 * 18 16 14 22 22 C 1.47314 * 108.74033 * 24.28636 * 13 12 11 23 23 H 1.09004 * 109.84791 * 239.38923 * 22 13 12 24 24 C 1.52998 * 110.06692 * 118.12902 * 22 13 12 25 25 N 1.30721 * 108.94296 * 0.40224 * 4 3 2 26 26 N 1.34426 * 125.95770 * 180.31205 * 2 1 3 27 27 H 0.97004 * 126.82657 * 359.94238 * 26 2 1 28 28 H 1.09001 * 109.46953 * 269.68737 * 1 2 3 29 29 H 1.09000 * 109.47318 * 29.68335 * 1 2 3 30 30 H 1.09000 * 109.47161 * 149.68966 * 1 2 3 31 31 H 1.09004 * 109.46694 * 30.29653 * 5 4 3 32 32 H 1.08996 * 109.47267 * 150.28864 * 5 4 3 33 33 H 0.96999 * 119.99786 * 359.97438 * 8 6 5 34 34 H 1.09003 * 111.00193 * 271.94046 * 11 9 8 35 35 H 1.08996 * 111.00297 * 35.75178 * 11 9 8 36 36 H 1.08997 * 110.36480 * 81.82491 * 12 11 9 37 37 H 1.08993 * 110.36873 * 204.15212 * 12 11 9 38 38 H 0.96998 * 119.99543 * 180.02562 * 17 16 14 39 39 H 1.08999 * 109.47020 * 302.26734 * 24 22 13 40 40 H 1.08996 * 109.47009 * 62.26665 * 24 22 13 41 41 H 1.08999 * 109.47132 * 182.26648 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2754 1.0589 0.0000 4 6 3.5553 0.6888 0.0028 5 6 4.7373 1.6235 0.0065 6 6 5.1302 1.9420 -1.4131 7 8 4.5116 1.4573 -2.3368 8 7 6.1691 2.7656 -1.6562 9 6 6.5514 3.0748 -3.0361 10 1 6.3854 2.2133 -3.6831 11 6 5.7725 4.3111 -3.5577 12 6 6.7409 4.8564 -4.6368 13 7 8.0883 4.6359 -4.0806 14 6 9.2151 5.3377 -4.4168 15 1 10.1594 5.0988 -3.9502 16 6 9.1437 6.3561 -5.3574 17 7 7.9930 6.6469 -5.9265 18 14 10.6809 7.3128 -5.8166 19 1 11.8368 6.7940 -5.0420 20 1 10.9476 7.1540 -7.2688 21 1 10.4807 8.7509 -5.5045 22 6 8.0232 3.5339 -3.1052 23 1 8.3478 3.8865 -2.1262 24 6 8.9092 2.3739 -3.5637 25 7 3.6195 -0.6169 -0.0040 26 7 2.2964 -1.0881 -0.0059 27 1 2.0093 -2.0147 -0.0102 28 1 -0.3633 -0.0056 1.0277 29 1 -0.3634 0.8928 -0.5089 30 1 -0.3633 -0.8872 -0.5186 31 1 4.4706 2.5445 0.5250 32 1 5.5747 1.1484 0.5175 33 1 6.6636 3.1535 -0.9173 34 1 4.8211 4.0154 -4.0000 35 1 5.6211 5.0414 -2.7628 36 1 6.6202 4.3042 -5.5687 37 1 6.5672 5.9200 -4.7998 38 1 7.9433 7.3582 -6.5840 39 1 8.5896 2.0410 -4.5512 40 1 9.9465 2.7054 -3.6101 41 1 8.8226 1.5490 -2.8566 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088558001.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:55 Heat of formation + Delta-G solvation = 44.722044 kcal Electronic energy + Delta-G solvation = -23255.557354 eV Core-core repulsion = 19785.781616 eV Total energy + Delta-G solvation = -3469.775738 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.15953 -40.94350 -39.14944 -35.59275 -34.68275 -33.82109 -33.34586 -32.06512 -31.25856 -30.07732 -28.62322 -26.39839 -25.78414 -23.05798 -22.22736 -21.78762 -21.54163 -20.84627 -18.89002 -18.71243 -18.19687 -17.38933 -16.67155 -16.50124 -16.22309 -15.80838 -15.49319 -15.24705 -14.76354 -14.48213 -14.32362 -13.99993 -13.78825 -13.63627 -13.60362 -13.22781 -13.10899 -12.91879 -12.75293 -12.71808 -12.60800 -12.21572 -12.07468 -11.92944 -11.56636 -11.43646 -11.27333 -11.09412 -10.89745 -10.72839 -10.44366 -10.00831 -8.88709 -7.73202 -5.18286 0.56898 1.49507 1.50367 1.60283 1.63093 1.64536 1.75147 2.31054 2.54603 3.03296 3.37539 3.54391 3.57942 3.84356 3.87820 3.96289 4.00668 4.23088 4.42519 4.44854 4.51695 4.63813 4.69555 4.71546 4.77452 4.82169 4.95424 5.05807 5.07175 5.14769 5.25216 5.35424 5.38246 5.51843 5.60991 5.64404 5.81275 6.21915 6.31711 6.58647 7.07990 7.12590 7.27464 7.80181 8.44106 9.29067 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.041194 B = 0.002891 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.551913 B = 9683.760616 C =10044.116088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.284 3.716 3 N -0.569 5.569 4 C 0.236 3.764 5 C -0.043 4.043 6 C 0.522 3.478 7 O -0.583 6.583 8 N -0.700 5.700 9 C 0.154 3.846 10 H 0.073 0.927 11 C -0.138 4.138 12 C 0.159 3.841 13 N -0.614 5.614 14 C -0.223 4.223 15 H 0.087 0.913 16 C -0.072 4.072 17 N -0.952 5.952 18 Si 0.979 3.021 19 H -0.264 1.264 20 H -0.298 1.298 21 H -0.293 1.293 22 C 0.151 3.849 23 H 0.059 0.941 24 C -0.147 4.147 25 N -0.337 5.337 26 N -0.475 5.475 27 H 0.455 0.545 28 H 0.115 0.885 29 H 0.095 0.905 30 H 0.110 0.890 31 H 0.149 0.851 32 H 0.149 0.851 33 H 0.418 0.582 34 H 0.059 0.941 35 H 0.073 0.927 36 H -0.019 1.019 37 H 0.078 0.922 38 H 0.245 0.755 39 H 0.032 0.968 40 H 0.049 0.951 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.275 -14.126 17.367 25.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.006 3.994 3 N -0.300 5.300 4 C -0.048 4.048 5 C -0.085 4.085 6 C 0.308 3.692 7 O -0.463 6.463 8 N -0.352 5.352 9 C 0.048 3.952 10 H 0.091 0.909 11 C -0.178 4.178 12 C 0.033 3.967 13 N -0.340 5.340 14 C -0.352 4.352 15 H 0.105 0.895 16 C -0.264 4.264 17 N -0.603 5.603 18 Si 0.808 3.192 19 H -0.188 1.188 20 H -0.226 1.226 21 H -0.220 1.220 22 C 0.044 3.956 23 H 0.077 0.923 24 C -0.206 4.206 25 N -0.167 5.167 26 N -0.196 5.196 27 H 0.303 0.697 28 H 0.134 0.866 29 H 0.113 0.887 30 H 0.128 0.872 31 H 0.166 0.834 32 H 0.167 0.833 33 H 0.256 0.744 34 H 0.078 0.922 35 H 0.092 0.908 36 H -0.001 1.001 37 H 0.096 0.904 38 H 0.055 0.945 39 H 0.051 0.949 40 H 0.068 0.932 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.047 -14.353 16.607 25.039 hybrid contribution 0.613 0.158 -0.769 0.996 sum -11.434 -14.196 15.837 24.147 Atomic orbital electron populations 1.20641 0.80135 1.06267 1.06251 1.25242 0.98320 0.82048 0.93742 1.70298 1.01763 1.31362 1.26549 1.23687 0.93443 0.90110 0.97530 1.20020 0.94265 1.00105 0.94073 1.20725 0.79368 0.77624 0.91442 1.90709 1.54011 1.53722 1.47821 1.45733 1.32900 1.48266 1.08290 1.21675 0.93911 0.96534 0.83126 0.90884 1.23184 0.97885 0.97231 0.99466 1.21649 0.83077 1.00736 0.91244 1.44822 1.05454 1.36964 1.46730 1.19452 0.87932 1.09985 1.17868 0.89503 1.25630 0.99988 1.00971 0.99768 1.70061 1.24552 1.33731 1.31920 0.84992 0.79129 0.78008 0.77100 1.18784 1.22552 1.21967 1.21264 0.92278 0.88358 0.93654 0.92303 1.22121 1.00000 0.98134 1.00356 1.77852 0.98791 1.12525 1.27516 1.47863 1.03292 1.10969 1.57439 0.69671 0.86646 0.88665 0.87168 0.83373 0.83346 0.74363 0.92223 0.90805 1.00090 0.90405 0.94510 0.94925 0.93202 0.90966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.58 10.51 71.24 0.75 0.17 16 2 C 0.28 5.45 8.24 138.23 1.14 6.59 16 3 N -0.57 -15.24 11.19 -179.73 -2.01 -17.25 16 4 C 0.24 6.35 6.63 138.63 0.92 7.27 16 5 C -0.04 -0.90 6.33 29.10 0.18 -0.71 16 6 C 0.52 15.33 7.82 87.66 0.69 16.01 16 7 O -0.58 -23.25 15.72 -3.03 -0.05 -23.30 16 8 N -0.70 -19.02 5.19 -436.92 -2.27 -21.29 16 9 C 0.15 5.57 2.79 46.18 0.13 5.70 16 10 H 0.07 2.97 7.33 -2.38 -0.02 2.95 16 11 C -0.14 -5.64 6.77 31.99 0.22 -5.43 16 12 C 0.16 8.11 5.89 86.86 0.51 8.62 16 13 N -0.61 -30.91 3.14 -667.56 -2.10 -33.01 16 14 C -0.22 -12.16 9.91 84.03 0.83 -11.33 16 15 H 0.09 4.47 7.83 -2.91 -0.02 4.45 16 16 C -0.07 -4.03 5.49 84.86 0.47 -3.57 16 17 N -0.95 -57.26 10.09 21.65 0.22 -57.04 16 18 Si 0.98 45.52 29.55 68.60 2.03 47.54 16 19 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 20 H -0.30 -14.08 7.11 99.48 0.71 -13.38 16 21 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 22 C 0.15 5.87 3.49 45.28 0.16 6.03 16 23 H 0.06 2.08 7.70 -2.39 -0.02 2.06 16 24 C -0.15 -5.29 9.15 71.98 0.66 -4.63 16 25 N -0.34 -8.97 12.80 -51.33 -0.66 -9.63 16 26 N -0.48 -8.93 7.45 -50.71 -0.38 -9.31 16 27 H 0.45 4.68 8.96 -213.09 -1.91 2.77 16 28 H 0.12 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.09 0.88 8.14 -2.39 -0.02 0.87 16 30 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 31 H 0.15 2.28 8.14 -2.38 -0.02 2.26 16 32 H 0.15 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.42 8.26 8.34 -92.71 -0.77 7.49 16 34 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 35 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 36 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 37 H 0.08 4.49 5.87 -2.39 -0.01 4.48 16 38 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 39 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.05 1.83 8.06 -2.39 -0.02 1.81 16 41 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -82.36 343.28 -0.18 -82.54 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: -1.62 Total: 16.01 kcal Atomic # 6 Polarization: 18.08 SS G_CDS: 6.65 Total: 24.73 kcal Atomic # 7 Polarization: -140.34 SS G_CDS: -7.19 Total: -147.53 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: -0.05 Total: -23.30 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.54 kcal Total: -82.36 -0.18 -82.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088558001.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.263 kcal (2) G-P(sol) polarization free energy of solvation -82.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds