Wall clock time and date at job start Tue Mar 31 2020 03:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.35535 * 125.67520 * 2 1 4 4 C 1.35452 * 108.86581 * 180.26522 * 3 2 1 5 5 C 1.39833 * 107.86763 * 359.76556 * 4 3 2 6 6 C 1.37644 * 125.67603 * 179.86655 * 2 1 3 7 7 C 1.46679 * 126.23465 * 0.02562 * 6 2 1 8 8 O 1.21690 * 120.00039 * 354.33629 * 7 6 2 9 9 N 1.34781 * 120.00191 * 174.34189 * 7 6 2 10 10 C 1.46497 * 120.00328 * 184.72760 * 9 7 6 11 11 H 1.09003 * 109.45868 * 324.97014 * 10 9 7 12 12 C 1.53036 * 109.46185 * 84.92779 * 10 9 7 13 13 C 1.52761 * 109.38442 * 181.26077 * 12 10 9 14 14 N 1.46926 * 109.01090 * 305.59175 * 13 12 10 15 15 C 1.36930 * 120.63108 * 233.58455 * 14 13 12 16 16 H 1.07998 * 120.00022 * 148.36550 * 15 14 13 17 17 C 1.38816 * 119.99832 * 328.09196 * 15 14 13 18 18 N 1.31618 * 119.99908 * 349.88470 * 17 15 14 19 19 Si 1.86799 * 119.99923 * 169.88650 * 17 15 14 20 20 H 1.48500 * 109.47154 * 89.99738 * 19 17 15 21 21 H 1.48497 * 109.47046 * 209.99902 * 19 17 15 22 22 H 1.48499 * 109.47183 * 329.99815 * 19 17 15 23 23 C 1.46929 * 118.73733 * 53.30661 * 14 13 12 24 24 C 1.53041 * 109.45952 * 205.00169 * 10 9 7 25 25 H 1.08997 * 109.52905 * 58.64653 * 24 10 9 26 26 O 1.42903 * 109.49329 * 298.55888 * 24 10 9 27 27 H 1.08998 * 109.46949 * 273.88186 * 1 2 3 28 28 H 1.08995 * 109.46996 * 33.87933 * 1 2 3 29 29 H 1.08997 * 109.47110 * 153.88199 * 1 2 3 30 30 H 1.07991 * 125.57101 * 359.97438 * 3 2 1 31 31 H 1.08004 * 126.06712 * 179.74523 * 4 3 2 32 32 H 1.07999 * 126.45913 * 179.97438 * 5 4 3 33 33 H 0.97008 * 119.99595 * 4.72447 * 9 7 6 34 34 H 1.08999 * 109.49944 * 301.34052 * 12 10 9 35 35 H 1.09003 * 109.49751 * 61.43451 * 12 10 9 36 36 H 1.08998 * 109.50936 * 185.70385 * 13 12 10 37 37 H 1.09004 * 109.42716 * 65.42788 * 13 12 10 38 38 H 0.97003 * 119.99686 * 180.02562 * 18 17 15 39 39 H 1.08996 * 109.58556 * 66.43473 * 23 14 13 40 40 H 1.09002 * 109.58538 * 186.86193 * 23 14 13 41 41 H 0.96701 * 113.99399 * 180.16529 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2555 1.1010 0.0000 4 6 3.5521 0.7093 -0.0059 5 6 3.5780 -0.6888 -0.0044 6 6 2.2678 -1.1181 0.0026 7 6 1.8124 -2.5124 0.0053 8 8 0.6265 -2.7649 0.1094 9 7 2.7073 -3.5139 -0.1074 10 6 2.2459 -4.9006 -0.2089 11 1 1.3520 -5.0315 0.4010 12 6 1.9185 -5.2234 -1.6686 13 6 1.4078 -6.6597 -1.7680 14 7 2.3935 -7.5615 -1.1566 15 6 2.8850 -8.6331 -1.8531 16 1 3.8941 -8.9751 -1.6766 17 6 2.0843 -9.2835 -2.7820 18 7 0.7999 -9.0047 -2.8535 19 14 2.8295 -10.5545 -3.9303 20 1 2.7567 -11.8961 -3.2979 21 1 2.0753 -10.5685 -5.2094 22 1 4.2490 -10.2091 -4.1965 23 6 2.8465 -7.2881 0.2141 24 6 3.3453 -5.8415 0.2893 25 1 3.5949 -5.5960 1.3215 26 8 4.5066 -5.6942 -0.5304 27 1 -0.3633 0.0696 1.0253 28 1 -0.3633 0.8531 -0.5728 29 1 -0.3633 -0.9227 -0.4524 30 1 1.9083 2.1236 -0.0004 31 1 4.4133 1.3611 -0.0113 32 1 4.4583 -1.3144 -0.0083 33 1 3.6570 -3.3165 -0.1212 34 1 1.1520 -4.5377 -2.0298 35 1 2.8177 -5.1169 -2.2753 36 1 1.2701 -6.9254 -2.8161 37 1 0.4581 -6.7442 -1.2396 38 1 0.2404 -9.4595 -3.5023 39 1 2.0166 -7.4250 0.9073 40 1 3.6579 -7.9682 0.4733 41 1 5.2444 -6.2639 -0.2730 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090088413.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:29 Heat of formation + Delta-G solvation = -9.684619 kcal Electronic energy + Delta-G solvation = -24046.892439 eV Core-core repulsion = 20542.464700 eV Total energy + Delta-G solvation = -3504.427739 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.38870 -39.35343 -37.76887 -34.90597 -34.41448 -32.89982 -31.83176 -30.29243 -29.27500 -28.37878 -26.56401 -25.14036 -22.94996 -22.20154 -21.44764 -20.49032 -19.74307 -19.13198 -17.86013 -17.09874 -16.05937 -15.78116 -15.67754 -15.51809 -14.68290 -14.34134 -14.24795 -13.97680 -13.77654 -13.47105 -13.33439 -13.12411 -12.80212 -12.46685 -12.36102 -12.09794 -12.04743 -11.97021 -11.21390 -10.96873 -10.86640 -10.69747 -10.28433 -10.20897 -10.02485 -9.85306 -9.62246 -9.30899 -8.82973 -8.72282 -8.44073 -8.22779 -6.59921 -5.77113 -3.25379 1.49926 2.61767 2.68394 3.37715 3.44666 3.46451 3.47881 3.57159 4.47652 4.69513 4.73457 4.86813 4.91292 5.12699 5.27532 5.32019 5.34291 5.38624 5.43635 5.55630 5.62407 5.77618 5.96986 5.97464 6.09858 6.26828 6.41157 6.51372 6.58869 6.65021 6.68299 6.85410 6.91022 6.96667 7.12315 7.43680 7.71324 7.78338 7.79651 8.11093 8.41010 8.48620 9.22194 9.82873 10.40967 11.31026 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.029595 B = 0.003617 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.879653 B = 7740.133534 C = 8087.475796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.412 5.412 3 C 0.006 3.994 4 C -0.209 4.209 5 C -0.145 4.145 6 C -0.045 4.045 7 C 0.583 3.417 8 O -0.554 6.554 9 N -0.705 5.705 10 C 0.164 3.836 11 H 0.092 0.908 12 C -0.144 4.144 13 C 0.175 3.825 14 N -0.582 5.582 15 C -0.250 4.250 16 H 0.063 0.937 17 C 0.004 3.996 18 N -0.904 5.904 19 Si 0.905 3.095 20 H -0.287 1.287 21 H -0.290 1.290 22 H -0.279 1.279 23 C 0.119 3.881 24 C 0.082 3.918 25 H 0.046 0.954 26 O -0.555 6.555 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.106 0.894 30 H 0.166 0.834 31 H 0.141 0.859 32 H 0.143 0.857 33 H 0.403 0.597 34 H 0.049 0.951 35 H 0.066 0.934 36 H 0.091 0.909 37 H 0.019 0.981 38 H 0.254 0.746 39 H 0.027 0.973 40 H 0.062 0.938 41 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.393 17.689 7.182 19.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.084 5.084 3 C -0.129 4.129 4 C -0.233 4.233 5 C -0.171 4.171 6 C -0.159 4.159 7 C 0.371 3.629 8 O -0.434 6.434 9 N -0.355 5.355 10 C 0.060 3.940 11 H 0.110 0.890 12 C -0.184 4.184 13 C 0.049 3.951 14 N -0.304 5.304 15 C -0.380 4.380 16 H 0.081 0.919 17 C -0.194 4.194 18 N -0.548 5.548 19 Si 0.735 3.265 20 H -0.214 1.214 21 H -0.216 1.216 22 H -0.204 1.204 23 C -0.009 4.009 24 C 0.020 3.980 25 H 0.064 0.936 26 O -0.360 6.360 27 H 0.093 0.907 28 H 0.098 0.902 29 H 0.125 0.875 30 H 0.184 0.816 31 H 0.159 0.841 32 H 0.161 0.839 33 H 0.238 0.762 34 H 0.068 0.932 35 H 0.085 0.915 36 H 0.109 0.891 37 H 0.037 0.963 38 H 0.064 0.936 39 H 0.045 0.955 40 H 0.080 0.920 41 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 2.616 17.798 6.811 19.236 hybrid contribution 1.087 -0.830 -0.308 1.402 sum 3.703 16.968 6.503 18.545 Atomic orbital electron populations 1.22291 0.76143 1.05548 1.03648 1.43870 1.06844 1.05011 1.52702 1.21978 0.90771 0.91458 1.08658 1.20801 0.95935 0.95031 1.11515 1.21366 0.94557 0.95455 1.05709 1.20228 0.90453 0.87831 1.17374 1.17025 0.85835 0.83483 0.76599 1.90769 1.16366 1.84815 1.51428 1.45869 1.09797 1.06499 1.73311 1.21057 0.96116 0.77606 0.99204 0.88987 1.22449 1.01114 1.00569 0.94266 1.20691 0.89820 0.83976 1.00593 1.43849 1.49204 1.28562 1.08785 1.19106 0.95159 1.05687 1.18064 0.91943 1.25174 0.94912 0.98110 1.01251 1.69977 1.03670 1.44162 1.36988 0.86259 0.78480 0.81439 0.80321 1.21417 1.21598 1.20449 1.21555 0.97913 0.92256 0.89194 1.22632 0.86068 0.97533 0.91755 0.93603 1.86450 1.24210 1.66217 1.59087 0.90675 0.90188 0.87546 0.81633 0.84141 0.83888 0.76193 0.93205 0.91497 0.89096 0.96316 0.93572 0.95484 0.91997 0.78104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.66 10.63 59.85 0.64 1.30 16 2 N -0.41 -5.07 3.16 -120.24 -0.38 -5.45 16 3 C 0.01 0.07 11.38 -16.91 -0.19 -0.13 16 4 C -0.21 -2.19 10.81 -39.98 -0.43 -2.62 16 5 C -0.14 -1.75 10.35 -39.12 -0.41 -2.16 16 6 C -0.04 -0.64 6.88 -81.98 -0.56 -1.20 16 7 C 0.58 9.64 7.73 -12.85 -0.10 9.54 16 8 O -0.55 -10.63 14.29 5.20 0.07 -10.56 16 9 N -0.71 -11.06 5.04 -55.08 -0.28 -11.34 16 10 C 0.16 2.96 2.24 -67.89 -0.15 2.81 16 11 H 0.09 1.80 7.51 -51.93 -0.39 1.41 16 12 C -0.14 -3.00 5.50 -26.84 -0.15 -3.15 16 13 C 0.18 4.32 5.22 -3.93 -0.02 4.30 16 14 N -0.58 -14.37 2.93 -172.58 -0.51 -14.87 16 15 C -0.25 -6.77 9.58 -15.06 -0.14 -6.92 16 16 H 0.06 1.64 7.85 -52.49 -0.41 1.23 16 17 C 0.00 0.12 5.06 -17.43 -0.09 0.03 16 18 N -0.90 -26.33 11.06 55.49 0.61 -25.71 16 19 Si 0.91 21.67 29.57 -169.99 -5.03 16.64 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 C 0.12 2.37 6.16 -3.71 -0.02 2.35 16 24 C 0.08 1.36 3.38 -26.61 -0.09 1.27 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 26 O -0.55 -9.03 12.09 -35.23 -0.43 -9.46 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.11 1.35 6.24 -51.93 -0.32 1.03 16 30 H 0.17 1.08 8.06 -52.49 -0.42 0.66 16 31 H 0.14 1.13 8.06 -52.48 -0.42 0.71 16 32 H 0.14 1.47 7.45 -52.49 -0.39 1.08 16 33 H 0.40 5.55 7.16 -40.82 -0.29 5.26 16 34 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.07 1.47 7.61 -51.93 -0.40 1.07 16 36 H 0.09 2.51 6.13 -51.93 -0.32 2.19 16 37 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 39 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 41 H 0.37 4.77 9.08 45.56 0.41 5.18 16 LS Contribution 334.62 15.07 5.04 5.04 Total: -1.00 -32.98 334.62 -7.64 -40.62 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -5.04 Total: 9.66 kcal Atomic # 6 Polarization: 7.14 SS G_CDS: -1.72 Total: 5.42 kcal Atomic # 7 Polarization: -56.82 SS G_CDS: -0.55 Total: -57.37 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: -0.35 Total: -20.02 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.64 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.98 -7.64 -40.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090088413.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.938 kcal (2) G-P(sol) polarization free energy of solvation -32.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds